Carg24704-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24704-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_270 : 37456 .. 38936 (-)
Sequence length	378

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAGAAAAAAAGGAAAGAGAGGAATGGGGTTTCTCTCGCTTTTAGCATAGCGGGCCCCAACGGGAGGCCCACACGACGGGCTATTAGTTCAGTGGTAGAGCGCGCCCCTGATAATTGCGTCATTGTGCCTGAGCTGTGAGGGCTCTTAACCACATGAATAGTTCAACATGCTCATCAACGCCTGACCTTGAGATGTGGATCATCCAAGGCACATTAGCATGACGTACTTCTCCTATTTGAACCGGGGTTTGAAACCAAACTTCTCTTCAGGAGGATAGATGGGTTGATTCACCTATCTCACGATCCAGCCCCCTTAGAGGCCCAACGTCCTCGTTGGCACACCTCTCGGTGTCAGGCTCTGATACCATTTGTAACAACTCAAGCCCACCGCTAGCATATATTGTCTTCTTTGAGCTTTTCCTTTTGGGATTCCCCTCAAGTTTTTAAAACCAGGTCTATTCGGGAGAGGTTTCCACACTCTTATAAGAAATGCTTCGTACCCCTCTCCAACCAACGTGAGATCCATTAAGGATTACTTCCCCTTTTATCTCTCCAAACAGCTCTATATAGTTATATCCTTCACTAATTTGTACAGTTGAGCTTTGGAATGAAATGAATACAACTTCCATGTATTCCGCAGGGTAGGAAGCTAGCATGGTGTTCTCTAATGGCGGGGGAGATAAATGCATATAAAAGAAGACAAGTCGCCTCATCAAGATCATACTTCCAACAAATCCCCCTCTGCCAAAAGATTAAATCTCTAAACTACGGAGTTCAACTACCCCACCATTCAAGAACACCATAAACATGATTCGCAGTAAGTTCCAGAAAAAAAATGGATCAACCAAAAACACAGAAGAGGAAACAAGATGATCAAATTTGAAAAGGGTAGTGATGATCTGAAACCTTGGGTTTGATGATCGTACGAAGCAGATGGTTGAACCCCATTTCTTGTTCTAGGCGAAGCACTCAAAATGTTGTTCCTGTGCAAGCAAAGAAAGAAAGAGCAGTTGGTGAGCAAGTTCTTCTATAAGAAGAAGATGCTTTCGGCCGATTACATATCTATTTGTAGAACAGTTTGTTTTATGAATGATTTTGTCTCGAAAACGTCAAATTTTAGCTATTAATCTGTAAAGTTGCTTGATTAGTCGGTTAATTGTAATTATTTTTATATAAATTACGAATTTAGTACACTTTTGTGTATATATACATTTTGATTAAAATTATCCATTCGTAGAATGACGGACGTGTTTAATTTTTCGTCTGGATCCGACCCAAATGGAGCTTATTCGGCGATAGCCCGGATTGGTTGCTCCGTTCATCTTTCCGGCGAAAAGGGATGAAAATCCGGCGACGAAGGAGCTTCGAATTAAGCCTCGGCGGCAATGGAATCTCCCGTCGATTCTTCTTCTTCTTTTGTTAGTTCGTTTTAATTTCTGCAGCGCCGCATCACCTGTCTCGCCCCTTCCGAGGTAA

mRNA sequence

ATGGGGGAGAAAAAAAGGAAAGAGAGGAATGGGGTTTCTCTCGCTTTTAGCATAGCGGGCCCCAACGGGAGGCCCACACGACGGGCTATTAGTTCAGTGGTAGAGCGCGCCCCTGATAATTGCGTCATTGTGCCTGAGCTGCGAAGCACTCAAAATGTTGTTCCTGTGCAAGCAAAGAAAGAAAGAGCAGTTGGTGAGCAACCCGGATTGGTTGCTCCGTTCATCTTTCCGGCGAAAAGGGATGAAAATCCGGCGACGAAGGAGCTTCGAATTAAGCCTCGGCGGCAATGGAATCTCCCGTCGATTCTTCTTCTTCTTTTGTTAGTTCGTTTTAATTTCTGCAGCGCCGCATCACCTGTCTCGCCCCTTCCGAGGTAA

Coding sequence (CDS)

ATGGGGGAGAAAAAAAGGAAAGAGAGGAATGGGGTTTCTCTCGCTTTTAGCATAGCGGGCCCCAACGGGAGGCCCACACGACGGGCTATTAGTTCAGTGGTAGAGCGCGCCCCTGATAATTGCGTCATTGTGCCTGAGCTGCGAAGCACTCAAAATGTTGTTCCTGTGCAAGCAAAGAAAGAAAGAGCAGTTGGTGAGCAACCCGGATTGGTTGCTCCGTTCATCTTTCCGGCGAAAAGGGATGAAAATCCGGCGACGAAGGAGCTTCGAATTAAGCCTCGGCGGCAATGGAATCTCCCGTCGATTCTTCTTCTTCTTTTGTTAGTTCGTTTTAATTTCTGCAGCGCCGCATCACCTGTCTCGCCCCTTCCGAGGTAA

Protein sequence

MGEKKRKERNGVSLAFSIAGPNGRPTRRAISSVVERAPDNCVIVPELRSTQNVVPVQAKKERAVGEQPGLVAPFIFPAKRDENPATKELRIKPRRQWNLPSILLLLLLVRFNFCSAASPVSPLPR

Homology

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BLAST of Carg24704-RA vs. TrEMBL
Match: tr|A0A2N9HP93|A0A2N9HP93_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41670 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.3e-11
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 4   KKRKERNGVSLAFSIAGPNGRPTRRAISSVVERAPDNCVIVPELR 49
           KK KER+GVSLAF IAGP GRP RRAISSVVERAPDNCV+VP LR
Sbjct: 320 KKGKERDGVSLAFGIAGPGGRPARRAISSVVERAPDNCVVVPGLR 364

The following BLAST results are available for this feature:

BLAST of Carg24704-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24704-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24704-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24704-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9HP93\|A0A2N9HP93_FAGSY	3.3e-11	84.44	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41670 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24704	Carg24704	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24704-RA	Carg24704-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24704-RA.CDS.3	Carg24704-RA.CDS.3	CDS
Carg24704-RA.CDS.2	Carg24704-RA.CDS.2	CDS
Carg24704-RA.CDS.1	Carg24704-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24704-RA.exon.3	Carg24704-RA.exon.3	exon
Carg24704-RA.exon.2	Carg24704-RA.exon.2	exon
Carg24704-RA.exon.1	Carg24704-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25