Carg27190-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27190-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Serine-rich protein-like protein
Location	Cucurbita_argyrosperma_scaffold_486 : 42274 .. 44077 (+)
Sequence length	1347

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCTTCTAGAAAATCGAGTGGGCCGGTTCTGAGGTCTCTCTCACCTTCTGGGAGATTCTATGGCTCCTATTCTTCTTCTATGTCCTCTGGCTCATCGGCTTTTGCGTCTTCTACATCAAGCTTTTCCACCAGAAACCCTACGTTTTTCCGTAGATCTGTGTCTCCTTCTCGTATTAATCTTCAACCTTCTTCTTCTCCGTCGGCGTCGTCCGTGAGATTTTCATTGGACCGGTCTATTTCTCCGAATCGGCCGATTTCTGTTTCGACTCGTATCAGTGGGAATCAAGTAGTGAAGAGGCAGAGCAACCAGAAGAGGACCTGCATGTGCTCACCGACTACGCATCCTGGTTCGTTCAGATGTAGTCTCCATAAAGGCGTTCCGTCACAGCCTTCGACTCCTTACTCGTCTAATCGGCTCAACGCGCGGAGATCGGCGATGACGAACTCTCTTGTCAGAATCGGAGGAGTTGAAGGCGATTTAGTGAAGCGTGCCTTGGCGTCCCTCATCCGGCCTTCGTCTCATAGTCAAAGGCGCCGAGCGGATTTCTGTCCGAGACCGAGCCGGCTTTCGAACATGTCGAAAGCCGATGATTTGTGATGGAGATTTTGGTACGTTGGCGAATATCCTCTGGTTTATTAATCTGTTTTCCTCTTCTGAGTTCCCGTCAACGAAGACGGGAGATTCCGACCACTGGTTCGACGGCAGTTACCGATCGTAGCGAAAGGATACGGAATCGGAGGCGAAGCATGGGAATCATATCTGGTTGCCTCTCCAGTAAACCTTTCTGCCGGGAGTTGGACTAGAGAACCTATATAACTTTGTGTATATGCAGCATATATAAATATATGGAAGACATATATAGTTGCCGCGACATTGATAACAATTCGTGGAGCTTCTGGACACTAATTTTTCACCAATTTCAAAATTTAACAGTCAATTCATTCCTAAATGCTCTGGTCTCGAACTAATTTCAAATGGAACGATAAAATTAATTTCGTCTGCCAATCGGTGAAATCAGTTCATTCAGTTAATGTTCCACGAACTCGCTTCGTACTGTTTCCAGAACGGTTGTTCTTGTTTGGTTGGGCGTCGGCCGTCTCCTTCCTTCCGTTGTCGACTCTGTCTATTGTCGGCGTGAAATTGTGGCCGGAAAGTTGCGTGCTGATGATTACCGATATCCGTTCGGTCGGTCAACGTGGTGATTTCTCAAAGGTAAAGTAATTTTATCTTTAATCTTCCTATTCCTCTGTTTCTTCGAGTTTTCAGTTCGTTATAATGTCTGTTTATGTTCTGTATACAGATGCATTTACAGGTTGATACGGAAGGAACCTTTGAAGTATGAATTTGTGATCAGAAAGTAGGATTAATGATTGAGAAATTAGGCGGAGATGGTTCAAGTTTGGACGAAGTTGTGAACACAAAACTGAACAAATTCAATTCAAATTAACTGGAATCTATACACCACATAAAATAAATGTTAAAAGAAACAAGTTGAAGGAAAGAATTGGACGGAAGAAAACTGAAACATACGAAATCATGATGATATGGTGCGGTAGACGGTGGAGGTGGATGGTAAACCTGGTGATGTTCCAAATCGGTGGAGAGACCGACTTGTACCTCCACACGAAAAACCAATCCGAAGAACAAACCCTATCAAATGTTCATCAATTATTGAAATTCTACCCATTTTTGTATTATGAACTTGATGATACTCAACGAGAGCGTTACCTCCCCCCATATCCAAGATTAGGATGGTGAGACATGCAGCACAAATTGATATACATCACTAAGTTCA

mRNA sequence

ATGGCGGTTTCTTCTAGAAAATCGAGTGGGCCGGTTCTGAGGTCTCTCTCACCTTCTGGGAGATTCTATGGCTCCTATTCTTCTTCTATGTCCTCTGGCTCATCGGCTTTTGCGTCTTCTACATCAAGCTTTTCCACCAGAAACCCTACGTTTTTCCGTAGATCTGTGTCTCCTTCTCGTATTAATCTTCAACCTTCTTCTTCTCCGTCGGCGTCGTCCGTGAGATTTTCATTGGACCGGTCTATTTCTCCGAATCGGCCGATTTCTGTTTCGACTCGTATCAGTGGGAATCAAGTAGTGAAGAGGCAGAGCAACCAGAAGAGGACCTGCATGTGCTCACCGACTACGCATCCTGGTTCGTTCAGATGTAGTCTCCATAAAGGCGTTCCGTCACAGCCTTCGACTCCTTACTCGTCTAATCGGCTCAACGCGCGGAGATCGGCGATGACGAACTCTCTTGTCAGAATCGGAGGAGTTGAAGGCGATTTAGTGAAGCGTGCCTTGGCGTCCCTCATCCGGCCTTCGTCTCATAGTCAAAGGCGCCGAGCGGATTTCTGTCCGAGACCGAGCCGGCTTTCGAACATGTCGAAAGCCGATGATTTACGGGAGATTCCGACCACTGGTTCGACGGCAGTTACCGATCGTAGCGAAAGGATACGGAATCGGAGGCGAAGCATGGGAATCATATCTGGTTGCCTCTCCAAACGGTTGTTCTTGTTTGGTTGGGCGTCGGCCGTCTCCTTCCTTCCGTTGTCGACTCTGTCTATTGTCGGCGTGAAATTGTGGCCGGAAAGTTGCGTGCTGATGATTACCGATATCCGTTCGGTCGGTCAACGTGGTGATTTCTCAAAGATGCATTTACAGGTTGATACGGAAGGAACCTTTGAAGTATGAATTTGTGATCAGAAAGTAGGATTAATGATTGAGAAATTAGGCGGAGATGGTTCAAGTTTGGACGAAGTTGTGAACACAAAACTGAACAAATTCAATTCAAATTAACTGGAATCTATACACCACATAAAATAAATGTTAAAAGAAACAAGTTGAAGGAAAGAATTGGACGGAAGAAAACTGAAACATACGAAATCATGATGATATGGTGCGGTAGACGGTGGAGGTGGATGGTAAACCTGGTGATGTTCCAAATCGGTGGAGAGACCGACTTGTACCTCCACACGAAAAACCAATCCGAAGAACAAACCCTATCAAATGTTCATCAATTATTGAAATTCTACCCATTTTTGTATTATGAACTTGATGATACTCAACGAGAGCGTTACCTCCCCCCATATCCAAGATTAGGATGGTGAGACATGCAGCACAAATTGATATACATCACTAAGTTCA

Coding sequence (CDS)

ATGGCGGTTTCTTCTAGAAAATCGAGTGGGCCGGTTCTGAGGTCTCTCTCACCTTCTGGGAGATTCTATGGCTCCTATTCTTCTTCTATGTCCTCTGGCTCATCGGCTTTTGCGTCTTCTACATCAAGCTTTTCCACCAGAAACCCTACGTTTTTCCGTAGATCTGTGTCTCCTTCTCGTATTAATCTTCAACCTTCTTCTTCTCCGTCGGCGTCGTCCGTGAGATTTTCATTGGACCGGTCTATTTCTCCGAATCGGCCGATTTCTGTTTCGACTCGTATCAGTGGGAATCAAGTAGTGAAGAGGCAGAGCAACCAGAAGAGGACCTGCATGTGCTCACCGACTACGCATCCTGGTTCGTTCAGATGTAGTCTCCATAAAGGCGTTCCGTCACAGCCTTCGACTCCTTACTCGTCTAATCGGCTCAACGCGCGGAGATCGGCGATGACGAACTCTCTTGTCAGAATCGGAGGAGTTGAAGGCGATTTAGTGAAGCGTGCCTTGGCGTCCCTCATCCGGCCTTCGTCTCATAGTCAAAGGCGCCGAGCGGATTTCTGTCCGAGACCGAGCCGGCTTTCGAACATGTCGAAAGCCGATGATTTACGGGAGATTCCGACCACTGGTTCGACGGCAGTTACCGATCGTAGCGAAAGGATACGGAATCGGAGGCGAAGCATGGGAATCATATCTGGTTGCCTCTCCAAACGGTTGTTCTTGTTTGGTTGGGCGTCGGCCGTCTCCTTCCTTCCGTTGTCGACTCTGTCTATTGTCGGCGTGAAATTGTGGCCGGAAAGTTGCGTGCTGATGATTACCGATATCCGTTCGGTCGGTCAACGTGGTGATTTCTCAAAGATGCATTTACAGGTTGATACGGAAGGAACCTTTGAAGTATGA

Protein sequence

MAVSSRKSSGPVLRSLSPSGRFYGSYSSSMSSGSSAFASSTSSFSTRNPTFFRRSVSPSRINLQPSSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGSFRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQRRRADFCPRPSRLSNMSKADDLREIPTTGSTAVTDRSERIRNRRRSMGIISGCLSKRLFLFGWASAVSFLPLSTLSIVGVKLWPESCVLMITDIRSVGQRGDFSKMHLQVDTEGTFEV

Homology

[Close]

BLAST of Carg27190-RA vs. NCBI nr
Match: XP_022933728.1 (uncharacterized protein LOC111441057 [Cucurbita moschata])

HSP 1 Score: 300.4 bits (768), Expect = 6.6e-78
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGS 120
           XXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGS
Sbjct: 61  XXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGS 120

Query: 121 FRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQR 180
           FRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQR
Sbjct: 121 FRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQR 180

Query: 181 RRADFCPRPSRLSNMSKADDL 202
           RRADFCPRPSRLSNMSKADDL
Sbjct: 181 RRADFCPRPSRLSNMSKADDL 201

[Close]

BLAST of Carg27190-RA vs. NCBI nr
Match: XP_023530348.1 (uncharacterized protein LOC111792947 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.4 bits (768), Expect = 6.6e-78
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGS 120
           XXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGS
Sbjct: 61  XXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGS 120

Query: 121 FRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQR 180
           FRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQR
Sbjct: 121 FRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQR 180

Query: 181 RRADFCPRPSRLSNMSKADDL 202
           RRADFCPRPSRLSNMSKADDL
Sbjct: 181 RRADFCPRPSRLSNMSKADDL 201

[Close]

BLAST of Carg27190-RA vs. NCBI nr
Match: XP_022966156.1 (uncharacterized protein LOC111465917 [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 7.3e-77
Identity = 200/201 (99.50%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGS 120
           XXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGS
Sbjct: 61  XXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGS 120

Query: 121 FRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQR 180
           FRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQR
Sbjct: 121 FRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQR 180

Query: 181 RRADFCPRPSRLSNMSKADDL 202
           RRADFCPR SRLSNMSKADDL
Sbjct: 181 RRADFCPRRSRLSNMSKADDL 201

[Close]

BLAST of Carg27190-RA vs. NCBI nr
Match: XP_022960906.1 (uncharacterized protein LOC111461568 [Cucurbita moschata])

HSP 1 Score: 261.5 bits (667), Expect = 3.4e-66
Identity = 165/206 (80.10%), Postives = 170/206 (82.52%), Query Frame = 0


Query: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYS-----SSXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAVSSRKSSGPV+RSLSPSGRF  SYS       XXXXXXXXXXXXXXXX          
Sbjct: 1   MAVSSRKSSGPVMRSLSPSGRFCRSYSXXXXXXXXXXXXXXXXXXXXXXXNPTSFFRRSL 60

Query: 61  XXXXXXXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPT 120
                      SS SASSVRF+LDRSISPNR ISV TR  GNQVVKRQSNQKRTC+CSPT
Sbjct: 61  SPSRVHLQGSSSSTSASSVRFALDRSISPNRHISVLTRGGGNQVVKRQSNQKRTCLCSPT 120

Query: 121 THPGSFRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPS 180
           THPGSFRCSLHKGVPSQP+TPYSSNRLNARRSAMTNSLVRIGGVEGDLV+RALASLIRPS
Sbjct: 121 THPGSFRCSLHKGVPSQPTTPYSSNRLNARRSAMTNSLVRIGGVEGDLVRRALASLIRPS 180

Query: 181 SHSQRRRADFCPRPSRLSNMSKADDL 202
           SHSQRRRADFCPRPSRLS MSKADDL
Sbjct: 181 SHSQRRRADFCPRPSRLSIMSKADDL 206

[Close]

BLAST of Carg27190-RA vs. NCBI nr
Match: XP_023516526.1 (putative protein TPRXL [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.2 bits (666), Expect = 4.4e-66
Identity = 164/207 (79.23%), Postives = 170/207 (82.13%), Query Frame = 0


Query: 1   MAVSSRKSSGPVLRSLSPSGRFYGSY------SSSXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAVSSR+SSGPV+RSLSPSGRF GSY         XXXXXXXXXXXXXXXX         
Sbjct: 1   MAVSSRRSSGPVMRSLSPSGRFCGSYXXXXXXXXXXXXXXXXXXXXXXXXXNPTSFFRRS 60

Query: 61  XXXXXXXXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSP 120
                       SS SASSVRF+LDRSISPNR ISV TR  GNQVVKRQSNQKRTC+CSP
Sbjct: 61  LSPSRVHLQGSSSSTSASSVRFALDRSISPNRHISVLTRGGGNQVVKRQSNQKRTCLCSP 120

Query: 121 TTHPGSFRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRP 180
           TTHPGSFRCSLHKGVPSQP+TPYSSNRLNARRSAMTNSLVRIGGVEGDLV+RALASLIRP
Sbjct: 121 TTHPGSFRCSLHKGVPSQPTTPYSSNRLNARRSAMTNSLVRIGGVEGDLVRRALASLIRP 180

Query: 181 SSHSQRRRADFCPRPSRLSNMSKADDL 202
           SSHSQRRRADFCPRPSRLS MSKADDL
Sbjct: 181 SSHSQRRRADFCPRPSRLSIMSKADDL 207

[Close]

BLAST of Carg27190-RA vs. TAIR10
Match: AT5G11090.1 (serine-rich protein-related)

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-36
Identity = 131/215 (60.93%), Postives = 148/215 (68.84%), Query Frame = 0


Query: 4   SSRKSSGPVLRSLSPSGRFYGSYSSS-------------XXXXXXXXXXXXXXXXXXXXX 63
           S  KS+GPVLRS SPSGRF G YS +             XXXXXXXXXXXXXXXXXXXXX
Sbjct: 6   SRTKSNGPVLRSQSPSGRFCGGYSRAVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 65

Query: 64  XXXXXXXXXXXXXXXXSSPSASSVRFSLD-RSISP-NRPISVSTRISGNQVVKRQSNQKR 123
           XXXXXXX         + P + S R+SLD RSISP N+ ISVS     NQ         R
Sbjct: 66  XXXXXXXSPTRVNLYTAQPMSQSFRYSLDSRSISPTNKSISVSK----NQPPSHNHKISR 125

Query: 124 TCMCSPTTHPGSFRCSLHKGVPS---QPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVK 183
            CMCSPTTHPGSFRCSLHK V +   Q +  Y++N LN RRSAMTNSLVRIGGVEG+ V+
Sbjct: 126 RCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVR 185

Query: 184 RALASLIRPSSHSQRRRADFCPRPSRLSNMSKADD 201
           RAL +LIRPSSH  +RRA + PRPSRLS M+KAD+
Sbjct: 186 RALTTLIRPSSHHLKRRAAYQPRPSRLSIMAKADE 216

[Close]

BLAST of Carg27190-RA vs. TAIR10
Match: AT5G25280.1 (serine-rich protein-related)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 83/139 (59.71%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 67  SSPSASSVRFSLD-RSISPNRPISVSTRISGNQVVKRQSNQKRTCMCSPTTHPGSFRCSL 126
           S+P   S R+S+D RSISPNR I+VS+    N    +  + +R CMCSPTTHPGSFRCSL
Sbjct: 84  SAPMTQSFRYSIDNRSISPNRSIAVSSNKPSNH--HKIPDSRRRCMCSPTTHPGSFRCSL 143

Query: 127 HKGVPS---QPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHSQRRR 186
           HK V +   Q +  Y++N LN RRSAMTNSLVRIGGVEG+ V+RAL +LIRPSSH  +RR
Sbjct: 144 HKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRR 203

Query: 187 ADFCPRPSRLSNMSKADDL 202
           + + PR SRL++MSKA+DL
Sbjct: 204 SAYEPRRSRLASMSKAEDL 220

[Close]

BLAST of Carg27190-RA vs. TAIR10
Match: AT5G20370.1 (serine-rich protein-related)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-13
Identity = 47/109 (43.12%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 100 VKRQSNQKRTCMCSPTTHPGSFRCSLHKGVPSQPSTPYSS------NR----------LN 159
           V      KR C+CSPTTHPGSFRCS H+ +  + S   +S      NR          LN
Sbjct: 61  VSSNHQTKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLN 120

Query: 160 ARRSAMTNSLVRIGGVEGDLVKRAL-ASLIRPSSHSQRRRADFCPRPSR 192
            R+ A+ NSL +IG VE +  +R+L A+L +PSS    RR +F PR SR
Sbjct: 121 LRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSR 169

[Close]

BLAST of Carg27190-RA vs. TAIR10
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 4.1e-05
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 96  GNQVVKRQSNQKRT-CMCSPTTHPGSFRCSLHKGVPSQ 133
           G++ + RQ++  +T C+CSPTTHPGSFRC +H+ +  Q
Sbjct: 29  GSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQ 66

[Close]

BLAST of Carg27190-RA vs. TAIR10
Match: AT1G24577.1 (unknown protein)

HSP 1 Score: 42.0 bits (97), Expect = 7.6e-04
Identity = 19/44 (43.18%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 101 KRQSNQKRTCMCSPTTHPGSFRCSLHKGVPSQPSTPYSSNRLNA 145
           ++ S  K  C+CSPTTHPGSF+C LH+    Q +    +N L +
Sbjct: 23  RQTSITKTICICSPTTHPGSFKCKLHRTPSLQRNKSVETNILQS 66

[Close]

BLAST of Carg27190-RA vs. TrEMBL
Match: tr|A0A1S4DUZ2|A0A1S4DUZ2_CUCME (uncharacterized serine-rich protein C215.13-like OS=Cucumis melo OX=3656 GN=LOC103487397 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.5e-59
Identity = 168/203 (82.76%), Postives = 175/203 (86.21%), Query Frame = 0


Query: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYSS-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAVSSRKSSGPVLRSLSPSGRFYGS SS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAVSSRKSSGPVLRSLSPSGRFYGSCSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGN-QVVKRQSNQKRTCMCSPTTHP 120
                 X            DRSISPNRPISV +R +GN QVVK+QS+QKRTCMCSPTTHP
Sbjct: 61  RVNLQGXXXXXXXXXXXXXDRSISPNRPISVLSRATGNHQVVKKQSHQKRTCMCSPTTHP 120

Query: 121 GSFRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHS 180
           GSFRCSLHKGV S PSTPYSSNRLNARRSAMTNSLVRIGGVEGD+++RALASLIRPSSHS
Sbjct: 121 GSFRCSLHKGVQSHPSTPYSSNRLNARRSAMTNSLVRIGGVEGDILRRALASLIRPSSHS 180

Query: 181 QRRRADFCPRPSRLSNMSKADDL 202
           QRRR DFCPRPSRLS MSKADDL
Sbjct: 181 QRRRVDFCPRPSRLSIMSKADDL 203

[Close]

BLAST of Carg27190-RA vs. TrEMBL
Match: tr|A0A0A0LW36|A0A0A0LW36_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264020 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 6.8e-55
Identity = 169/203 (83.25%), Postives = 174/203 (85.71%), Query Frame = 0


Query: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYSS-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAVSSRKSSGPVLRSLSPSGRFYGS SS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAVSSRKSSGPVLRSLSPSGRFYGSCSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXSSPSASSVRFSLDRSISPNRPISVSTRISGN-QVVKRQSNQKRTCMCSPTTHP 120
           XXXXXXX                   RPISV +R SGN QVVK+QS QKRTCMCSPTTHP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXRPISVLSRASGNHQVVKKQSQQKRTCMCSPTTHP 120

Query: 121 GSFRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHS 180
           GSFRCSLHKGV SQPSTPYSSNRLNARRSAMTNSLVRIGGVEGD+++RALASLIRPSSHS
Sbjct: 121 GSFRCSLHKGVQSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDILRRALASLIRPSSHS 180

Query: 181 QRRRADFCPRPSRLSNMSKADDL 202
           QRRR DFCPRPSRLS MSKADDL
Sbjct: 181 QRRRVDFCPRPSRLSIMSKADDL 203

[Close]

BLAST of Carg27190-RA vs. TrEMBL
Match: tr|A0A2I4EMR7|A0A2I4EMR7_9ROSI (uncharacterized protein LOC108991002 OS=Juglans regia OX=51240 GN=LOC108991002 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.7e-54
Identity = 153/202 (75.74%), Postives = 163/202 (80.69%), Query Frame = 0


Query: 2   AVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61
           A S R SSGPV+RSL+PSGRFY S+S S    XXXXXXXXXXXXXXXXXXXXX       
Sbjct: 3   ATSRRSSSGPVVRSLAPSGRFYDSHSPS-RYSXXXXXXXXXXXXXXXXXXXXXRSASPTR 62

Query: 62  XXXXXSSPSASSVRFSLDRSISPNRPISVSTRISG---NQVVKRQSNQKRTCMCSPTTHP 121
                +SPSA SVRFSLDRSISP+R ISVS R +G   NQVVKRQ  QKRTCMCSPTTHP
Sbjct: 63  VNMCGTSPSARSVRFSLDRSISPSRSISVSPRGNGGGSNQVVKRQ-GQKRTCMCSPTTHP 122

Query: 122 GSFRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSSHS 181
           GSFRCSLHKG  SQ   PYS NRLNARRSAMTNSLVRIGGVEGDLVKRALA+LIRPSSH 
Sbjct: 123 GSFRCSLHKGSGSQSVAPYSPNRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQ 182

Query: 182 QRRRADFCPRPSRLSNMSKADD 201
           Q+RRADF PRPSRLS MSKA++
Sbjct: 183 QKRRADFLPRPSRLSVMSKAEE 202

[Close]

BLAST of Carg27190-RA vs. TrEMBL
Match: tr|A0A1S4E2K6|A0A1S4E2K6_CUCME (uncharacterized protein LOC103496492 OS=Cucumis melo OX=3656 GN=LOC103496492 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.5e-51
Identity = 127/204 (62.25%), Postives = 141/204 (69.12%), Query Frame = 0


Query: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MA +SR+SS  VLRSLSPSGRFYG  +SS                               
Sbjct: 1   MAATSRRSSASVLRSLSPSGRFYGHRTSS-----SSAFASSTSTFSSRSATSFFCRSTSP 60

Query: 61  XXXXXXSSPSAS--SVRFSLDRSISPNRPISVSTRISG--NQVVKRQSNQKRTCMCSPTT 120
                  SPS S  SVRFSLDR+ SPNR +SVS+  SG  N+VV+RQS+ KRTCMCSPTT
Sbjct: 61  SRVNLHGSPSVSVPSVRFSLDRATSPNRSVSVSSPRSGGTNRVVQRQSSSKRTCMCSPTT 120

Query: 121 HPGSFRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSS 180
           HPGSFRCSLHKG+ SQP   YS +RLNARRSAMTNSLVRIGGVEGDLVKRALA+LIRPSS
Sbjct: 121 HPGSFRCSLHKGIISQPPALYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSS 180

Query: 181 HSQRRRADFCPRPSRLSNMSKADD 201
           H QRRR DF P+ SRLS MSKAD+
Sbjct: 181 HQQRRRVDFRPKRSRLSIMSKADE 199

[Close]

BLAST of Carg27190-RA vs. TrEMBL
Match: tr|A0A0A0LL69|A0A0A0LL69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009440 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.5e-51
Identity = 127/204 (62.25%), Postives = 141/204 (69.12%), Query Frame = 0


Query: 1   MAVSSRKSSGPVLRSLSPSGRFYGSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MA +SR+SS  VLRSLSPSGRFYG  +SS                               
Sbjct: 1   MAATSRRSSASVLRSLSPSGRFYGHRTSS-----SSAFASSTSTFSSRSATSFFCRSTSP 60

Query: 61  XXXXXXSSPSAS--SVRFSLDRSISPNRPISVSTRISG--NQVVKRQSNQKRTCMCSPTT 120
                  SPS S  SVRFSLDR+ SPNR +SVS+  SG  N+VV+RQS+ KRTCMCSPTT
Sbjct: 61  SRVNLHGSPSVSVPSVRFSLDRATSPNRSVSVSSSRSGGTNRVVQRQSSTKRTCMCSPTT 120

Query: 121 HPGSFRCSLHKGVPSQPSTPYSSNRLNARRSAMTNSLVRIGGVEGDLVKRALASLIRPSS 180
           HPGSFRCSLHKG+ SQP   YS +RLNARRSAMTNSLVRIGGVEGDLVKRALA+LIRPSS
Sbjct: 121 HPGSFRCSLHKGIISQPPALYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSS 180

Query: 181 HSQRRRADFCPRPSRLSNMSKADD 201
           H QRRR DF P+ SRLS MSKAD+
Sbjct: 181 HQQRRRVDFRPKRSRLSIMSKADE 199

The following BLAST results are available for this feature:

BLAST of Carg27190-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933728.1	6.6e-78	100.00	uncharacterized protein LOC111441057 [Cucurbita moschata]	[more]
XP_023530348.1	6.6e-78	100.00	uncharacterized protein LOC111792947 [Cucurbita pepo subsp. pepo]	[more]
XP_022966156.1	7.3e-77	99.50	uncharacterized protein LOC111465917 [Cucurbita maxima]	[more]
XP_022960906.1	3.4e-66	80.10	uncharacterized protein LOC111461568 [Cucurbita moschata]	[more]
XP_023516526.1	4.4e-66	79.23	putative protein TPRXL [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27190-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11090.1	2.0e-36	60.93	serine-rich protein-related	[more]
AT5G25280.1	1.7e-35	59.71	serine-rich protein-related	[more]
AT5G20370.1	1.4e-13	43.12	serine-rich protein-related	[more]
AT1G67910.1	4.1e-05	50.00	unknown protein	[more]
AT1G24577.1	7.6e-04	43.18	unknown protein	[more]

BLAST of Carg27190-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27190-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DUZ2\|A0A1S4DUZ2_CUCME	4.5e-59	82.76	uncharacterized serine-rich protein C215.13-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0A0LW36\|A0A0A0LW36_CUCSA	6.8e-55	83.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264020 PE=4 SV=1	[more]
tr\|A0A2I4EMR7\|A0A2I4EMR7_9ROSI	5.7e-54	75.74	uncharacterized protein LOC108991002 OS=Juglans regia OX=51240 GN=LOC108991002 P...	[more]
tr\|A0A1S4E2K6\|A0A1S4E2K6_CUCME	4.5e-51	62.25	uncharacterized protein LOC103496492 OS=Cucumis melo OX=3656 GN=LOC103496492 PE=...	[more]
tr\|A0A0A0LL69\|A0A0A0LL69_CUCSA	4.5e-51	62.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009440 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg27190	Carg27190	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg27190-RA	Carg27190-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27190-RA.exon.1	Carg27190-RA.exon.1	exon
Carg27190-RA.exon.2	Carg27190-RA.exon.2	exon
Carg27190-RA.exon.3	Carg27190-RA.exon.3	exon
Carg27190-RA.exon.4	Carg27190-RA.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27190-RA.CDS.1	Carg27190-RA.CDS.1	CDS
Carg27190-RA.CDS.2	Carg27190-RA.CDS.2	CDS
Carg27190-RA.CDS.3	Carg27190-RA.CDS.3	CDS
Carg27190-RA.CDS.4	Carg27190-RA.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27190-RA.three_prime_UTR.1	Carg27190-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..78
None	No IPR available	PANTHER	PTHR33132:SF12	SUBFAMILY NOT NAMED	coord: 7..200
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 7..200