Carg27183-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27183-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase RHY1A
Location	Cucurbita_argyrosperma_scaffold_486 : 8900 .. 9626 (+)
Sequence length	500

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTCCAATCACTGAACTTAACTACCAATTCCATATCAAACCGATAAAGCCCTAGATCAGTGCAGGAACTTCAGCTTTCAAGGTTTCGCCAAGTTTCTCCCATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGGTTCGTAAATCGCATCTCGACCTGTCAATGAATTAACAAATTATTCATTCGATTGAGGATGATGAACAGAGCTGATTCGATTTATCGTGTTTTTTTTTTCTTTTGCAGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGGTACTGAAACAACGGCGTCCGGAACAGCCGCGATGAATTTACATTTCGTTAATTTATTAATCATAAAACCTAAACGAAACACATCCAAAATTACTCTTGTAATCTGCGATTGGATGCAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGATGAAGACAACTTCATTCCAGTGGCTCCTTCTTCTTCTTCTTCTT

mRNA sequence

TCTTTCCAATCACTGAACTTAACTACCAATTCCATATCAAACCGATAAAGCCCTAGATCAGTGCAGGAACTTCAGCTTTCAAGGTTTCGCCAAGTTTCTCCCATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGATGAAGACAACTTCATTCCAGTGGCTCCTTCTTCTTCTTCTTCTT

Coding sequence (CDS)

ATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGA

Protein sequence

MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGSLLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW

Homology

[Close]

BLAST of Carg27183-RA vs. NCBI nr
Match: XP_022933256.1 (uncharacterized protein LOC111440241 [Cucurbita moschata])

HSP 1 Score: 238.4 bits (607), Expect = 1.2e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 117

[Close]

BLAST of Carg27183-RA vs. NCBI nr
Match: XP_023531367.1 (uncharacterized protein LOC111793636 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 7.8e-59
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKSVLCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATR+FSWTNWIAGEQNNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRRFSWTNWIAGEQNNCGQCW 117

[Close]

BLAST of Carg27183-RA vs. NCBI nr
Match: XP_023005576.1 (uncharacterized protein LOC111498516 isoform X1 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 3.0e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 32  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 91

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 92  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 148

[Close]

BLAST of Carg27183-RA vs. NCBI nr
Match: XP_023005584.1 (uncharacterized protein LOC111498516 isoform X2 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 3.0e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 21  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 80

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 81  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 137

[Close]

BLAST of Carg27183-RA vs. NCBI nr
Match: XP_023005591.1 (uncharacterized protein LOC111498516 isoform X3 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 3.0e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 117

[Close]

BLAST of Carg27183-RA vs. TAIR10
Match: AT2G15580.1 (RING/U-box superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-11
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRLHQTKACSDSPPIVATRTL----------TRKSVLCLYTSNHETL 60
          MAGMLPGVECARRRR H       +PPI ++ T           TR+    LYT+NHE+ 
Sbjct: 1  MAGMLPGVECARRRRFH-----GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESH 60

Query: 61 LASNPSLQGSLLVEAQENDN---LDGIAREAKRRLDERLR 88
           A     + S+  ++   DN   LDG A+EAK+RL++RLR
Sbjct: 61 QAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR 95

[Close]

BLAST of Carg27183-RA vs. TrEMBL
Match: tr|A0A1S3B9W3|A0A1S3B9W3_CUCME (uncharacterized protein LOC103487385 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487385 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.5e-34
Identity = 85/124 (68.55%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRR HQ K  SDSP + A + LTR+SVLCLYTSNHE LL SNPS+Q  
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDA-QVLTRRSVLCLYTSNHEALLVSNPSMQRR 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERL----RKSEDK-RGIATRKFSW--TNWIAGEQNNC 118
           LL+EA   D LDGIAREAKRRLDERL    RKSED  R +  RKFSW   NWI  E++ C
Sbjct: 61  LLMEAGGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKC 120

[Close]

BLAST of Carg27183-RA vs. TrEMBL
Match: tr|A0A1S3B9Y1|A0A1S3B9Y1_CUCME (uncharacterized protein LOC103487385 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487385 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-32
Identity = 84/124 (67.74%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRR HQ K  SDSP + A + LTR+SVLCLYTSNHE LL SNPS++  
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDA-QVLTRRSVLCLYTSNHEALLVSNPSMR-R 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERL----RKSEDK-RGIATRKFSW--TNWIAGEQNNC 118
           LL+EA   D LDGIAREAKRRLDERL    RKSED  R +  RKFSW   NWI  E++ C
Sbjct: 61  LLMEAGGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKC 120

[Close]

BLAST of Carg27183-RA vs. TrEMBL
Match: tr|A0A0A0LWJ8|A0A0A0LWJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265120 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-31
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAG LPGVECARRRR HQ    SDS P++A + LTR+SVLCLYTSN+E LL SNPS++  
Sbjct: 1   MAGTLPGVECARRRRCHQNSIWSDS-PLIAAQVLTRRSVLCLYTSNNEALLFSNPSMERR 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERL----RKSEDK-RGIATRKFSW--TNWIAGEQNNC 117
           LL+EA+  D LDGIAREAKRRLDERL    RKSED  R +  RKFSW   NWI  E++ C
Sbjct: 61  LLMEAEGEDELDGIAREAKRRLDERLLRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDKC 120

[Close]

BLAST of Carg27183-RA vs. TrEMBL
Match: tr|A0A2I4HNL2|A0A2I4HNL2_9ROSI (probable E3 ubiquitin-protein ligase RHY1A OS=Juglans regia OX=51240 GN=LOC109019824 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 67/146 (45.89%), Postives = 79/146 (54.11%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRR HQ+ ACSDSP  VA    TR+S  CLY SNHE    S  S + S
Sbjct: 1   MAGMLPGVECARRRRFHQSGACSDSPSTVAALGGTRRSSFCLYRSNHEPQHTSTSSQKRS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERL---RKSEDK----------RGIA----------- 117
           LL +   ++NL  +AREAK RLDERL   RKS+ K          R I            
Sbjct: 61  LLNQVYRDENLGEVAREAKERLDERLRTQRKSKTKSTQSLSCVEGRSIVLEELNTEMFGF 120

[Close]

BLAST of Carg27183-RA vs. TrEMBL
Match: tr|A0A2I4FQA0|A0A2I4FQA0_9ROSI (probable E3 ubiquitin-protein ligase RHY1A OS=Juglans regia OX=51240 GN=LOC109001127 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.9e-19
Identity = 66/147 (44.90%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRR HQ+ AC+DS   VA    TR+S  CLY SNHE    ++ SL+ S
Sbjct: 1   MAGMLPGVECARRRRFHQSGACADSQITVAAHGGTRRSSFCLYRSNHEPQHHNSTSLKRS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLR-------KSED---------------------- 117
            L +A +++ L  +AREAK RLDERLR       KS++                      
Sbjct: 61  SLNQAHQDEKLGEVAREAKERLDERLRTQRKTNTKSKESMKCVEGRSMVLGELQTEVFGT 120

The following BLAST results are available for this feature:

BLAST of Carg27183-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933256.1	1.2e-59	100.00	uncharacterized protein LOC111440241 [Cucurbita moschata]	[more]
XP_023531367.1	7.8e-59	98.29	uncharacterized protein LOC111793636 [Cucurbita pepo subsp. pepo]	[more]
XP_023005576.1	3.0e-58	96.58	uncharacterized protein LOC111498516 isoform X1 [Cucurbita maxima]	[more]
XP_023005584.1	3.0e-58	96.58	uncharacterized protein LOC111498516 isoform X2 [Cucurbita maxima]	[more]
XP_023005591.1	3.0e-58	96.58	uncharacterized protein LOC111498516 isoform X3 [Cucurbita maxima]	[more]

BLAST of Carg27183-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15580.1	3.3e-11	44.00	RING/U-box superfamily protein	[more]

BLAST of Carg27183-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27183-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B9W3\|A0A1S3B9W3_CUCME	7.5e-34	68.55	uncharacterized protein LOC103487385 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B9Y1\|A0A1S3B9Y1_CUCME	3.2e-32	67.74	uncharacterized protein LOC103487385 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LWJ8\|A0A0A0LWJ8_CUCSA	3.5e-31	65.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265120 PE=4 SV=1	[more]
tr\|A0A2I4HNL2\|A0A2I4HNL2_9ROSI	4.0e-19	45.89	probable E3 ubiquitin-protein ligase RHY1A OS=Juglans regia OX=51240 GN=LOC10901...	[more]
tr\|A0A2I4FQA0\|A0A2I4FQA0_9ROSI	8.9e-19	44.90	probable E3 ubiquitin-protein ligase RHY1A OS=Juglans regia OX=51240 GN=LOC10900...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg27183	Carg27183	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg27183-RA	Carg27183-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27183-RA.exon.1	Carg27183-RA.exon.1	exon
Carg27183-RA.exon.2	Carg27183-RA.exon.2	exon
Carg27183-RA.exon.3	Carg27183-RA.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27183-RA.five_prime_UTR.1	Carg27183-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27183-RA.CDS.1	Carg27183-RA.CDS.1	CDS
Carg27183-RA.CDS.2	Carg27183-RA.CDS.2	CDS
Carg27183-RA.CDS.3	Carg27183-RA.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27183-RA.three_prime_UTR.1	Carg27183-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 2..98
None	No IPR available	PANTHER	PTHR14155:SF215	SUBFAMILY NOT NAMED	coord: 2..98