Carg27429-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGGCAACACCTTCTTCGTCCCTGCAACTATAAGACTCTAGAAACTGTTGCTGTTCATCTTGCCCCCAAAACTCCATTGCTTCACAACTCAATCTCCTCATCATCCTCTCTTTACCAACCAGACTTAAATGTTCATAACGAATTGAAAACTCTGAGTGCCACCAACATAAACCATAAACACCTTGAACAGCAACCAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAGAAACTCATTGCTTCCCAATCTGATCCTCTTCTTGCGAAGGAAATTTTCGATTATGCTTGTCGTCAACCCCATTTTCGCCCATCGTCTTCCTCTTTTCTCGTTCTTATCCTCAAGCTAGGGCGTTCCAAGTACTTCTCTCTTATTGATGATCTTCTTCTTAGCTTCAAGTCTAGAGGCTACCCTCTCTCTCCAACTGTTTTCTCCTACATAATCAAAATCTATGGTGAAGCTGATTTACCAGATAAAGCTCTCAAAACCTTTTATACTATGATCGAGTTTGGCTGTACGCCATCGTCCAAACAGTTGAACCGCATACTAGAAATTTTGGTTTCTCACCGTAACTTCATTCGGCCAGCTTTTGATCTTTTCAAGAATGCCCGTCATCATGGTGTGTTGCCCAACACCAAGTCTTACAACATCCTCATGCGTGCATTCTGTTGGAATGGAGATCTTAGCATTGCCTACACTCTGTTCAACAAAATGTTCAAACGAGATGTCATTCCAGATGTCGAGTCGTATCGGATATTAATGCAGGGTCTATGCAGGAAGAATCAAGTGATTGGTGCCGTCGACTTGCTAGAAGATATGTTAAACAAAGGCTACGTTCCAGACACATTGAGCTATGCCACTTTGTTAAATAGTTTATGTAGGAAGAAAAAGCTGAGAGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAGGGTTGCAATCCTGATGTTGCTCATTACAATACAGTTATAACGGGATTTTGCAGAGAAGGGCGCGCTCTCGATGCTTGTAAGATTTTGGAGGATATGCAGTCGAACCGTTGTTTGCCTAACTTAGTGTCTTACCAGAGCTTGACTAATGGATTATGTGATCAAGGAATGTTTGAATTGGCAAAGGATTATGTTGAGGAGATGTCATTAAAGGGTTTTTGCCCACATTTCTCTGTCATTCATACTTTGGTAAAGGGTTTCATTAACGTTGGCAGAATCGACGATTCGTGTAGCGTTCTTGAAGACATACTAAAGCATGGGAAAGCCCCTCATTCTGAAACTTGGGAGATGATTCTATCTGGAATTTGTGAAGTTGAGGACACTGTAAAGTTATGTGAAATTTTAGAGAAGATTTTGAAGAAAGATGTAAGAAGAGACACTAGAATAGTGGAAGCAGGCTCTGGGTTGGGTGAGTATTTGATTAGGAAGTTACAAGCCTCCAAATCCCGAAGGGCTTGA ATGCGGCAACACCTTCTTCGTCCCTGCAACTATAAGACTCTAGAAACTGTTGCTGTTCATCTTGCCCCCAAAACTCCATTGCTTCACAACTCAATCTCCTCATCATCCTCTCTTTACCAACCAGACTTAAATGTTCATAACGAATTGAAAACTCTGAGTGCCACCAACATAAACCATAAACACCTTGAACAGCAACCAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAGAAACTCATTGCTTCCCAATCTGATCCTCTTCTTGCGAAGGAAATTTTCGATTATGCTTGTCGTCAACCCCATTTTCGCCCATCGTCTTCCTCTTTTCTCGTTCTTATCCTCAAGCTAGGGCGTTCCAAGTACTTCTCTCTTATTGATGATCTTCTTCTTAGCTTCAAGTCTAGAGGCTACCCTCTCTCTCCAACTGTTTTCTCCTACATAATCAAAATCTATGGTGAAGCTGATTTACCAGATAAAGCTCTCAAAACCTTTTATACTATGATCGAGTTTGGCTGTACGCCATCGTCCAAACAGTTGAACCGCATACTAGAAATTTTGGTTTCTCACCGTAACTTCATTCGGCCAGCTTTTGATCTTTTCAAGAATGCCCGTCATCATGGTGTGTTGCCCAACACCAAGTCTTACAACATCCTCATGCGTGCATTCTGTTGGAATGGAGATCTTAGCATTGCCTACACTCTGTTCAACAAAATGTTCAAACGAGATGTCATTCCAGATGTCGAGTCGTATCGGATATTAATGCAGGGTCTATGCAGGAAGAATCAAGTGATTGGTGCCGTCGACTTGCTAGAAGATATGTTAAACAAAGGCTACGTTCCAGACACATTGAGCTATGCCACTTTGTTAAATAGTTTATGTAGGAAGAAAAAGCTGAGAGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAGGGTTGCAATCCTGATGTTGCTCATTACAATACAGTTATAACGGGATTTTGCAGAGAAGGGCGCGCTCTCGATGCTTGTAAGATTTTGGAGGATATGCAGTCGAACCGTTGTTTGCCTAACTTAGTGTCTTACCAGAGCTTGACTAATGGATTATGTGATCAAGGAATGTTTGAATTGGCAAAGGATTATGTTGAGGAGATGTCATTAAAGGGTTTTTGCCCACATTTCTCTGTCATTCATACTTTGGTAAAGGGTTTCATTAACGTTGGCAGAATCGACGATTCGTGTAGCGTTCTTGAAGACATACTAAAGCATGGGAAAGCCCCTCATTCTGAAACTTGGGAGATGATTCTATCTGGAATTTGTGAAGTTGAGGACACTGTAAAGTTATGTGAAATTTTAGAGAAGATTTTGAAGAAAGATGTAAGAAGAGACACTAGAATAGTGGAAGCAGGCTCTGGGTTGGGTGAGTATTTGATTAGGAAGTTACAAGCCTCCAAATCCCGAAGGGCTTGA ATGCGGCAACACCTTCTTCGTCCCTGCAACTATAAGACTCTAGAAACTGTTGCTGTTCATCTTGCCCCCAAAACTCCATTGCTTCACAACTCAATCTCCTCATCATCCTCTCTTTACCAACCAGACTTAAATGTTCATAACGAATTGAAAACTCTGAGTGCCACCAACATAAACCATAAACACCTTGAACAGCAACCAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAGAAACTCATTGCTTCCCAATCTGATCCTCTTCTTGCGAAGGAAATTTTCGATTATGCTTGTCGTCAACCCCATTTTCGCCCATCGTCTTCCTCTTTTCTCGTTCTTATCCTCAAGCTAGGGCGTTCCAAGTACTTCTCTCTTATTGATGATCTTCTTCTTAGCTTCAAGTCTAGAGGCTACCCTCTCTCTCCAACTGTTTTCTCCTACATAATCAAAATCTATGGTGAAGCTGATTTACCAGATAAAGCTCTCAAAACCTTTTATACTATGATCGAGTTTGGCTGTACGCCATCGTCCAAACAGTTGAACCGCATACTAGAAATTTTGGTTTCTCACCGTAACTTCATTCGGCCAGCTTTTGATCTTTTCAAGAATGCCCGTCATCATGGTGTGTTGCCCAACACCAAGTCTTACAACATCCTCATGCGTGCATTCTGTTGGAATGGAGATCTTAGCATTGCCTACACTCTGTTCAACAAAATGTTCAAACGAGATGTCATTCCAGATGTCGAGTCGTATCGGATATTAATGCAGGGTCTATGCAGGAAGAATCAAGTGATTGGTGCCGTCGACTTGCTAGAAGATATGTTAAACAAAGGCTACGTTCCAGACACATTGAGCTATGCCACTTTGTTAAATAGTTTATGTAGGAAGAAAAAGCTGAGAGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAGGGTTGCAATCCTGATGTTGCTCATTACAATACAGTTATAACGGGATTTTGCAGAGAAGGGCGCGCTCTCGATGCTTGTAAGATTTTGGAGGATATGCAGTCGAACCGTTGTTTGCCTAACTTAGTGTCTTACCAGAGCTTGACTAATGGATTATGTGATCAAGGAATGTTTGAATTGGCAAAGGATTATGTTGAGGAGATGTCATTAAAGGGTTTTTGCCCACATTTCTCTGTCATTCATACTTTGGTAAAGGGTTTCATTAACGTTGGCAGAATCGACGATTCGTGTAGCGTTCTTGAAGACATACTAAAGCATGGGAAAGCCCCTCATTCTGAAACTTGGGAGATGATTCTATCTGGAATTTGTGAAGTTGAGGACACTGTAAAGTTATGTGAAATTTTAGAGAAGATTTTGAAGAAAGATGTAAGAAGAGACACTAGAATAGTGGAAGCAGGCTCTGGGTTGGGTGAGTATTTGATTAGGAAGTTACAAGCCTCCAAATCCCGAAGGGCTTGA MRQHLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHKHLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLSIAYTLFNKMFKRDVIPDVESYRILMQGLCRKNQVIGAVDLLEDMLNKGYVPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCNPDVAHYNTVITGFCREGRALDACKILEDMQSNRCLPNLVSYQSLTNGLCDQGMFELAKDYVEEMSLKGFCPHFSVIHTLVKGFINVGRIDDSCSVLEDILKHGKAPHSETWEMILSGICEVEDTVKLCEILEKILKKDVRRDTRIVEAGSGLGEYLIRKLQASKSRRA
BLAST of Carg27429-RA vs. NCBI nr
Match: XP_022932826.1 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucurbita moschata] >XP_022932827.1 pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 465.3 bits (1196), Expect = 2.5e-127 Identity = 228/229 (99.56%), Postives = 228/229 (99.56%), Query Frame = 0
BLAST of Carg27429-RA vs. NCBI nr
Match: XP_023515125.1 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 459.1 bits (1180), Expect = 1.8e-125 Identity = 224/229 (97.82%), Postives = 227/229 (99.13%), Query Frame = 0
BLAST of Carg27429-RA vs. NCBI nr
Match: XP_022974029.1 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucurbita maxima] >XP_022974030.1 pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 457.6 bits (1176), Expect = 5.2e-125 Identity = 223/229 (97.38%), Postives = 228/229 (99.56%), Query Frame = 0
BLAST of Carg27429-RA vs. NCBI nr
Match: XP_008463091.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucumis melo]) HSP 1 Score: 408.3 bits (1048), Expect = 3.6e-110 Identity = 201/225 (89.33%), Postives = 209/225 (92.89%), Query Frame = 0
BLAST of Carg27429-RA vs. NCBI nr
Match: XP_004138384.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucumis sativus] >KGN45858.1 hypothetical protein Csa_6G014780 [Cucumis sativus]) HSP 1 Score: 399.1 bits (1024), Expect = 2.2e-107 Identity = 198/229 (86.46%), Postives = 210/229 (91.70%), Query Frame = 0
BLAST of Carg27429-RA vs. TAIR10
Match: AT4G01400.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 227.6 bits (579), Expect = 1.6e-59 Identity = 107/168 (63.69%), Postives = 134/168 (79.76%), Query Frame = 0
BLAST of Carg27429-RA vs. TAIR10
Match: AT3G14580.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 72.8 bits (177), Expect = 6.6e-13 Identity = 45/159 (28.30%), Postives = 85/159 (53.46%), Query Frame = 0
BLAST of Carg27429-RA vs. TAIR10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein) HSP 1 Score: 68.9 bits (167), Expect = 9.5e-12 Identity = 42/160 (26.25%), Postives = 85/160 (53.12%), Query Frame = 0
BLAST of Carg27429-RA vs. TAIR10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 64.3 bits (155), Expect = 2.3e-10 Identity = 40/134 (29.85%), Postives = 65/134 (48.51%), Query Frame = 0
BLAST of Carg27429-RA vs. TAIR10
Match: AT3G09060.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 62.8 bits (151), Expect = 6.8e-10 Identity = 35/124 (28.23%), Postives = 64/124 (51.61%), Query Frame = 0
BLAST of Carg27429-RA vs. Swiss-Prot
Match: sp|Q8LDU5|PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g01400 PE=2 SV=2) HSP 1 Score: 227.6 bits (579), Expect = 2.9e-58 Identity = 107/168 (63.69%), Postives = 134/168 (79.76%), Query Frame = 0
BLAST of Carg27429-RA vs. Swiss-Prot
Match: sp|Q9LUD6|PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g14580 PE=2 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.2e-11 Identity = 45/159 (28.30%), Postives = 85/159 (53.46%), Query Frame = 0
BLAST of Carg27429-RA vs. Swiss-Prot
Match: sp|Q9FFE3|PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.7e-10 Identity = 42/160 (26.25%), Postives = 85/160 (53.12%), Query Frame = 0
BLAST of Carg27429-RA vs. Swiss-Prot
Match: sp|Q9M302|PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 4.2e-09 Identity = 40/134 (29.85%), Postives = 65/134 (48.51%), Query Frame = 0
BLAST of Carg27429-RA vs. Swiss-Prot
Match: sp|Q9SS81|PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.2e-08 Identity = 35/124 (28.23%), Postives = 64/124 (51.61%), Query Frame = 0
BLAST of Carg27429-RA vs. TrEMBL
Match: tr|A0A1S3CIG1|A0A1S3CIG1_CUCME (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103501324 PE=4 SV=1) HSP 1 Score: 408.3 bits (1048), Expect = 2.4e-110 Identity = 201/225 (89.33%), Postives = 209/225 (92.89%), Query Frame = 0
BLAST of Carg27429-RA vs. TrEMBL
Match: tr|A0A0A0K8U0|A0A0A0K8U0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014780 PE=4 SV=1) HSP 1 Score: 399.1 bits (1024), Expect = 1.5e-107 Identity = 198/229 (86.46%), Postives = 210/229 (91.70%), Query Frame = 0
BLAST of Carg27429-RA vs. TrEMBL
Match: tr|V4VX64|V4VX64_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023955mg PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65 Identity = 119/160 (74.38%), Postives = 147/160 (91.88%), Query Frame = 0
BLAST of Carg27429-RA vs. TrEMBL
Match: tr|A0A2H5P0A2|A0A2H5P0A2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_092250 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65 Identity = 119/160 (74.38%), Postives = 147/160 (91.88%), Query Frame = 0
BLAST of Carg27429-RA vs. TrEMBL
Match: tr|A0A2P2QPK1|A0A2P2QPK1_RHIMU (Pentatricopeptide repeat-containing protein At4g01400-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65 Identity = 122/161 (75.78%), Postives = 144/161 (89.44%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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