Carg27429 (gene) Silver-seed gourd

Overview
NameCarg27429
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpentatricopeptide repeat-containing protein At4g01400, mitochondrial-like
LocationCucurbita_argyrosperma_scaffold_355 : 56807 .. 58255 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCAACACCTTCTTCGTCCCTGCAACTATAAGACTCTAGAAACTGTTGCTGTTCATCTTGCCCCCAAAACTCCATTGCTTCACAACTCAATCTCCTCATCATCCTCTCTTTACCAACCAGACTTAAATGTTCATAACGAATTGAAAACTCTGAGTGCCACCAACATAAACCATAAACACCTTGAACAGCAACCAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAGAAACTCATTGCTTCCCAATCTGATCCTCTTCTTGCGAAGGAAATTTTCGATTATGCTTGTCGTCAACCCCATTTTCGCCCATCGTCTTCCTCTTTTCTCGTTCTTATCCTCAAGCTAGGGCGTTCCAAGTACTTCTCTCTTATTGATGATCTTCTTCTTAGCTTCAAGTCTAGAGGCTACCCTCTCTCTCCAACTGTTTTCTCCTACATAATCAAAATCTATGGTGAAGCTGATTTACCAGATAAAGCTCTCAAAACCTTTTATACTATGATCGAGTTTGGCTGTACGCCATCGTCCAAACAGTTGAACCGCATACTAGAAATTTTGGTTTCTCACCGTAACTTCATTCGGCCAGCTTTTGATCTTTTCAAGAATGCCCGTCATCATGGTGTGTTGCCCAACACCAAGTCTTACAACATCCTCATGCGTGCATTCTGTTGGAATGGAGATCTTAGCATTGCCTACACTCTGTTCAACAAAATGTTCAAACGAGATGTCATTCCAGATGTCGAGTCGTATCGGATATTAATGCAGGGTCTATGCAGGAAGAATCAAGTGATTGGTGCCGTCGACTTGCTAGAAGATATGTTAAACAAAGGCTACGTTCCAGACACATTGAGCTATGCCACTTTGTTAAATAGTTTATGTAGGAAGAAAAAGCTGAGAGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAGGGTTGCAATCCTGATGTTGCTCATTACAATACAGTTATAACGGGATTTTGCAGAGAAGGGCGCGCTCTCGATGCTTGTAAGATTTTGGAGGATATGCAGTCGAACCGTTGTTTGCCTAACTTAGTGTCTTACCAGAGCTTGACTAATGGATTATGTGATCAAGGAATGTTTGAATTGGCAAAGGATTATGTTGAGGAGATGTCATTAAAGGGTTTTTGCCCACATTTCTCTGTCATTCATACTTTGGTAAAGGGTTTCATTAACGTTGGCAGAATCGACGATTCGTGTAGCGTTCTTGAAGACATACTAAAGCATGGGAAAGCCCCTCATTCTGAAACTTGGGAGATGATTCTATCTGGAATTTGTGAAGTTGAGGACACTGTAAAGTTATGTGAAATTTTAGAGAAGATTTTGAAGAAAGATGTAAGAAGAGACACTAGAATAGTGGAAGCAGGCTCTGGGTTGGGTGAGTATTTGATTAGGAAGTTACAAGCCTCCAAATCCCGAAGGGCTTGA

mRNA sequence

ATGCGGCAACACCTTCTTCGTCCCTGCAACTATAAGACTCTAGAAACTGTTGCTGTTCATCTTGCCCCCAAAACTCCATTGCTTCACAACTCAATCTCCTCATCATCCTCTCTTTACCAACCAGACTTAAATGTTCATAACGAATTGAAAACTCTGAGTGCCACCAACATAAACCATAAACACCTTGAACAGCAACCAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAGAAACTCATTGCTTCCCAATCTGATCCTCTTCTTGCGAAGGAAATTTTCGATTATGCTTGTCGTCAACCCCATTTTCGCCCATCGTCTTCCTCTTTTCTCGTTCTTATCCTCAAGCTAGGGCGTTCCAAGTACTTCTCTCTTATTGATGATCTTCTTCTTAGCTTCAAGTCTAGAGGCTACCCTCTCTCTCCAACTGTTTTCTCCTACATAATCAAAATCTATGGTGAAGCTGATTTACCAGATAAAGCTCTCAAAACCTTTTATACTATGATCGAGTTTGGCTGTACGCCATCGTCCAAACAGTTGAACCGCATACTAGAAATTTTGGTTTCTCACCGTAACTTCATTCGGCCAGCTTTTGATCTTTTCAAGAATGCCCGTCATCATGGTGTGTTGCCCAACACCAAGTCTTACAACATCCTCATGCGTGCATTCTGTTGGAATGGAGATCTTAGCATTGCCTACACTCTGTTCAACAAAATGTTCAAACGAGATGTCATTCCAGATGTCGAGTCGTATCGGATATTAATGCAGGGTCTATGCAGGAAGAATCAAGTGATTGGTGCCGTCGACTTGCTAGAAGATATGTTAAACAAAGGCTACGTTCCAGACACATTGAGCTATGCCACTTTGTTAAATAGTTTATGTAGGAAGAAAAAGCTGAGAGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAGGGTTGCAATCCTGATGTTGCTCATTACAATACAGTTATAACGGGATTTTGCAGAGAAGGGCGCGCTCTCGATGCTTGTAAGATTTTGGAGGATATGCAGTCGAACCGTTGTTTGCCTAACTTAGTGTCTTACCAGAGCTTGACTAATGGATTATGTGATCAAGGAATGTTTGAATTGGCAAAGGATTATGTTGAGGAGATGTCATTAAAGGGTTTTTGCCCACATTTCTCTGTCATTCATACTTTGGTAAAGGGTTTCATTAACGTTGGCAGAATCGACGATTCGTGTAGCGTTCTTGAAGACATACTAAAGCATGGGAAAGCCCCTCATTCTGAAACTTGGGAGATGATTCTATCTGGAATTTGTGAAGTTGAGGACACTGTAAAGTTATGTGAAATTTTAGAGAAGATTTTGAAGAAAGATGTAAGAAGAGACACTAGAATAGTGGAAGCAGGCTCTGGGTTGGGTGAGTATTTGATTAGGAAGTTACAAGCCTCCAAATCCCGAAGGGCTTGA

Coding sequence (CDS)

ATGCGGCAACACCTTCTTCGTCCCTGCAACTATAAGACTCTAGAAACTGTTGCTGTTCATCTTGCCCCCAAAACTCCATTGCTTCACAACTCAATCTCCTCATCATCCTCTCTTTACCAACCAGACTTAAATGTTCATAACGAATTGAAAACTCTGAGTGCCACCAACATAAACCATAAACACCTTGAACAGCAACCAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAGAAACTCATTGCTTCCCAATCTGATCCTCTTCTTGCGAAGGAAATTTTCGATTATGCTTGTCGTCAACCCCATTTTCGCCCATCGTCTTCCTCTTTTCTCGTTCTTATCCTCAAGCTAGGGCGTTCCAAGTACTTCTCTCTTATTGATGATCTTCTTCTTAGCTTCAAGTCTAGAGGCTACCCTCTCTCTCCAACTGTTTTCTCCTACATAATCAAAATCTATGGTGAAGCTGATTTACCAGATAAAGCTCTCAAAACCTTTTATACTATGATCGAGTTTGGCTGTACGCCATCGTCCAAACAGTTGAACCGCATACTAGAAATTTTGGTTTCTCACCGTAACTTCATTCGGCCAGCTTTTGATCTTTTCAAGAATGCCCGTCATCATGGTGTGTTGCCCAACACCAAGTCTTACAACATCCTCATGCGTGCATTCTGTTGGAATGGAGATCTTAGCATTGCCTACACTCTGTTCAACAAAATGTTCAAACGAGATGTCATTCCAGATGTCGAGTCGTATCGGATATTAATGCAGGGTCTATGCAGGAAGAATCAAGTGATTGGTGCCGTCGACTTGCTAGAAGATATGTTAAACAAAGGCTACGTTCCAGACACATTGAGCTATGCCACTTTGTTAAATAGTTTATGTAGGAAGAAAAAGCTGAGAGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAGGGTTGCAATCCTGATGTTGCTCATTACAATACAGTTATAACGGGATTTTGCAGAGAAGGGCGCGCTCTCGATGCTTGTAAGATTTTGGAGGATATGCAGTCGAACCGTTGTTTGCCTAACTTAGTGTCTTACCAGAGCTTGACTAATGGATTATGTGATCAAGGAATGTTTGAATTGGCAAAGGATTATGTTGAGGAGATGTCATTAAAGGGTTTTTGCCCACATTTCTCTGTCATTCATACTTTGGTAAAGGGTTTCATTAACGTTGGCAGAATCGACGATTCGTGTAGCGTTCTTGAAGACATACTAAAGCATGGGAAAGCCCCTCATTCTGAAACTTGGGAGATGATTCTATCTGGAATTTGTGAAGTTGAGGACACTGTAAAGTTATGTGAAATTTTAGAGAAGATTTTGAAGAAAGATGTAAGAAGAGACACTAGAATAGTGGAAGCAGGCTCTGGGTTGGGTGAGTATTTGATTAGGAAGTTACAAGCCTCCAAATCCCGAAGGGCTTGA

Protein sequence

MRQHLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHKHLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLSIAYTLFNKMFKRDVIPDVESYRILMQGLCRKNQVIGAVDLLEDMLNKGYVPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCNPDVAHYNTVITGFCREGRALDACKILEDMQSNRCLPNLVSYQSLTNGLCDQGMFELAKDYVEEMSLKGFCPHFSVIHTLVKGFINVGRIDDSCSVLEDILKHGKAPHSETWEMILSGICEVEDTVKLCEILEKILKKDVRRDTRIVEAGSGLGEYLIRKLQASKSRRA
Homology
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BLAST of Carg27429 vs. NCBI nr
Match: XP_022932826.1 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucurbita moschata] >XP_022932827.1 pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 465.3 bits (1196), Expect = 2.5e-127
Identity = 228/229 (99.56%), Postives = 228/229 (99.56%), Query Frame = 0 

Query: 1   MRQHLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHK 60
           MRQHLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHK
Sbjct: 1   MRQHLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHK 60

Query: 61  HLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSK 120
           HLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSK
Sbjct: 61  HLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSK 120

Query: 121 YFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLN 180
           YFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLN
Sbjct: 121 YFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLN 180

Query: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLS 230
           RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMR FCWNGDLS
Sbjct: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRVFCWNGDLS 229

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BLAST of Carg27429 vs. NCBI nr
Match: XP_023515125.1 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 459.1 bits (1180), Expect = 1.8e-125
Identity = 224/229 (97.82%), Postives = 227/229 (99.13%), Query Frame = 0 

Query: 1   MRQHLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHK 60
           MRQHLLRPCNYKT+ETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTL+ATNINHK
Sbjct: 1   MRQHLLRPCNYKTIETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLNATNINHK 60

Query: 61  HLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSK 120
            LE+QPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSK
Sbjct: 61  RLEEQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSK 120

Query: 121 YFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLN 180
           YFSLIDDLLLSFKSRGYP SPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLN
Sbjct: 121 YFSLIDDLLLSFKSRGYPFSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLN 180

Query: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLS 230
           RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLS
Sbjct: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLS 229

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BLAST of Carg27429 vs. NCBI nr
Match: XP_022974029.1 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucurbita maxima] >XP_022974030.1 pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 457.6 bits (1176), Expect = 5.2e-125
Identity = 223/229 (97.38%), Postives = 228/229 (99.56%), Query Frame = 0 

Query: 1   MRQHLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHK 60
           MRQHLLRPCNYKT+ETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTL+ TNINHK
Sbjct: 1   MRQHLLRPCNYKTIETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLNDTNINHK 60

Query: 61  HLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSK 120
           HLE+QPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSK
Sbjct: 61  HLEEQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSK 120

Query: 121 YFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLN 180
           YFSLI+DLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLN
Sbjct: 121 YFSLINDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLN 180

Query: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLS 230
           RILEILVSHR+FIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLS
Sbjct: 181 RILEILVSHRDFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLS 229

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BLAST of Carg27429 vs. NCBI nr
Match: XP_008463091.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucumis melo])

HSP 1 Score: 408.3 bits (1048), Expect = 3.6e-110
Identity = 201/225 (89.33%), Postives = 209/225 (92.89%), Query Frame = 0 

Query: 4   HLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHKHLE 63
           HLLRP NY+T+ETVA H+A   PLLHN ISSSSSLYQP LNVHNE KTL  TNINHK  E
Sbjct: 4   HLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTL-ITNINHKQCE 63

Query: 64  QQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFS 123
            QPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSS LVLILKLGRSKYFS
Sbjct: 64  DQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFS 123

Query: 124 LIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRIL 183
           LIDDLLLSFKSRGYP++PT FSYIIKIYGEADLPDKALK FYTMIEFGCTPSSKQLNRIL
Sbjct: 124 LIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRIL 183

Query: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDL 229
           EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNIL+RAFCWNG++
Sbjct: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNI 227

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BLAST of Carg27429 vs. NCBI nr
Match: XP_004138384.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucumis sativus] >KGN45858.1 hypothetical protein Csa_6G014780 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 2.2e-107
Identity = 198/229 (86.46%), Postives = 210/229 (91.70%), Query Frame = 0 

Query: 1   MRQHLLRPCNYKTLETV-AVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINH 60
           M QHLLRPCNY+T+ETV A H+A K+PLL N ISSSSSLYQP LNVHNE K L  TN+ H
Sbjct: 1   MWQHLLRPCNYRTIETVAAAHVARKSPLLRNLISSSSSLYQPHLNVHNESKFL-ITNVKH 60

Query: 61  KHLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRS 120
           +  E QPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSS LVLILKLGRS
Sbjct: 61  EQCEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRS 120

Query: 121 KYFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQL 180
           KYFSLIDDLLLSFKSR YP++PT FSYIIKIYGEADLPDKALK FYTMI+FGCTPSSKQL
Sbjct: 121 KYFSLIDDLLLSFKSRRYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIDFGCTPSSKQL 180

Query: 181 NRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDL 229
           NRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNIL+RAFCWNG++
Sbjct: 181 NRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNI 228

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BLAST of Carg27429 vs. TAIR10
Match: AT4G01400.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-59
Identity = 107/168 (63.69%), Postives = 134/168 (79.76%), Query Frame = 0 

Query: 60  KHLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRS 119
           K +   P   IGSP RVQKLIASQSDPLLAKEIFDYA +QP+FR S SS L+LILKLGR 
Sbjct: 38  KPIVSNPKSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRG 97

Query: 120 KYFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQL 179
           +YF+LIDD+L   +S GYPL+  +F+Y+IK+Y EA LP+K L TFY M+EF  TP  K L
Sbjct: 98  RYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHL 157

Query: 180 NRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGD 228
           NRIL++LVSHR +++ AF+LFK++R HGV+PNT+SYN+LM+AFC N D
Sbjct: 158 NRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDD 205

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BLAST of Carg27429 vs. TAIR10
Match: AT3G14580.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-13
Identity = 45/159 (28.30%), Postives = 85/159 (53.46%), Query Frame = 0 

Query: 72  SPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFSLIDDLLLS 131
           +P  V K+  +  DP      + +  ++  ++P+ S + ++I K G++K +  I++++ +
Sbjct: 61  APNEVLKIFDNVKDPSFLLPAYQHYSKRKDYQPTESLYALMINKFGQAKMYDEIEEVMRT 120

Query: 132 FK-SRGYPLSPTVFSYIIKIYGE-ADLPDKALKTFYTMIEFGCTPSSKQLNRILEILVSH 191
            K  +    S   F  +++IYG  A   ++A++  + M +FGC PSSK  N IL +LVS 
Sbjct: 121 IKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSA 180

Query: 192 RNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDL 229
           + F      +F +A   GV  +    NIL++  C +G+L
Sbjct: 181 KLF-DEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNL 218

[Close]
BLAST of Carg27429 vs. TAIR10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 9.5e-12
Identity = 42/160 (26.25%), Postives = 85/160 (53.12%), Query Frame = 0 

Query: 73  PCRVQKLIASQSDPLLAKEIFDYACR-QPHFRPSSSSFLVLILKLGRSKYFSLIDDLLLS 132
           P R+  +I  Q +  LA +IF YA +  P F  +  ++  ++ KL R++ F  ++ L+  
Sbjct: 49  PKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMAD 108

Query: 133 FKSRGYPL--SPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRILEILVSH 192
            ++   P+     +F  +++ YG A   + +++ F  + +FG   S + LN +L +L+ +
Sbjct: 109 LRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQN 168

Query: 193 RNFIRPAFDLFKNARH-HGVLPNTKSYNILMRAFCWNGDL 229
           + F      +FKN++   G+ PN  + N+L++A C   D+
Sbjct: 169 QRF-DLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDI 207

[Close]
BLAST of Carg27429 vs. TAIR10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-10
Identity = 40/134 (29.85%), Postives = 65/134 (48.51%), Query Frame = 0 

Query: 55  TNINHKH-LEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLI 114
           TN+N  H L + P+ +      V K +  +S   LA   F        F+ +  +F V+I
Sbjct: 24  TNLNVNHLLTESPNHAEIKELDVVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMI 83

Query: 115 LKLGRSKYFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCT 174
            KL        +  LL   K +G+  S  +F  +I +Y +  L ++A++ FY + EFGC 
Sbjct: 84  RKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCD 143

Query: 175 PSSKQLNRILEILV 188
           PS K  N +L+ L+
Sbjct: 144 PSVKIYNHVLDTLL 157

[Close]
BLAST of Carg27429 vs. TAIR10
Match: AT3G09060.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 6.8e-10
Identity = 35/124 (28.23%), Postives = 64/124 (51.61%), Query Frame = 0 

Query: 72  SPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFSLIDDLLLS 131
           SP  V KL+ S+ +P  A  +FD A R P +  S+  +  ++ +L  ++  + +  ++  
Sbjct: 9   SPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVEL 68

Query: 132 FKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIE-FGCTPSSKQLNRILEILVSHR 191
            +S+       V   +IK YG+  +PD+AL  F  M E FGC P+ +  N +L   V  +
Sbjct: 69  IRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAK 128

Query: 192 NFIR 195
            +++
Sbjct: 129 QWVK 132

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BLAST of Carg27429 vs. Swiss-Prot
Match: sp|Q8LDU5|PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-58
Identity = 107/168 (63.69%), Postives = 134/168 (79.76%), Query Frame = 0 

Query: 60  KHLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRS 119
           K +   P   IGSP RVQKLIASQSDPLLAKEIFDYA +QP+FR S SS L+LILKLGR 
Sbjct: 38  KPIVSNPKSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRG 97

Query: 120 KYFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQL 179
           +YF+LIDD+L   +S GYPL+  +F+Y+IK+Y EA LP+K L TFY M+EF  TP  K L
Sbjct: 98  RYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHL 157

Query: 180 NRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGD 228
           NRIL++LVSHR +++ AF+LFK++R HGV+PNT+SYN+LM+AFC N D
Sbjct: 158 NRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDD 205

[Close]
BLAST of Carg27429 vs. Swiss-Prot
Match: sp|Q9LUD6|PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g14580 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-11
Identity = 45/159 (28.30%), Postives = 85/159 (53.46%), Query Frame = 0 

Query: 72  SPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFSLIDDLLLS 131
           +P  V K+  +  DP      + +  ++  ++P+ S + ++I K G++K +  I++++ +
Sbjct: 61  APNEVLKIFDNVKDPSFLLPAYQHYSKRKDYQPTESLYALMINKFGQAKMYDEIEEVMRT 120

Query: 132 FK-SRGYPLSPTVFSYIIKIYGE-ADLPDKALKTFYTMIEFGCTPSSKQLNRILEILVSH 191
            K  +    S   F  +++IYG  A   ++A++  + M +FGC PSSK  N IL +LVS 
Sbjct: 121 IKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSA 180

Query: 192 RNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDL 229
           + F      +F +A   GV  +    NIL++  C +G+L
Sbjct: 181 KLF-DEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNL 218

[Close]
BLAST of Carg27429 vs. Swiss-Prot
Match: sp|Q9FFE3|PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-10
Identity = 42/160 (26.25%), Postives = 85/160 (53.12%), Query Frame = 0 

Query: 73  PCRVQKLIASQSDPLLAKEIFDYACR-QPHFRPSSSSFLVLILKLGRSKYFSLIDDLLLS 132
           P R+  +I  Q +  LA +IF YA +  P F  +  ++  ++ KL R++ F  ++ L+  
Sbjct: 49  PKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMAD 108

Query: 133 FKSRGYPL--SPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRILEILVSH 192
            ++   P+     +F  +++ YG A   + +++ F  + +FG   S + LN +L +L+ +
Sbjct: 109 LRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQN 168

Query: 193 RNFIRPAFDLFKNARH-HGVLPNTKSYNILMRAFCWNGDL 229
           + F      +FKN++   G+ PN  + N+L++A C   D+
Sbjct: 169 QRF-DLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDI 207

[Close]
BLAST of Carg27429 vs. Swiss-Prot
Match: sp|Q9M302|PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-09
Identity = 40/134 (29.85%), Postives = 65/134 (48.51%), Query Frame = 0 

Query: 55  TNINHKH-LEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLI 114
           TN+N  H L + P+ +      V K +  +S   LA   F        F+ +  +F V+I
Sbjct: 24  TNLNVNHLLTESPNHAEIKELDVVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMI 83

Query: 115 LKLGRSKYFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCT 174
            KL        +  LL   K +G+  S  +F  +I +Y +  L ++A++ FY + EFGC 
Sbjct: 84  RKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCD 143

Query: 175 PSSKQLNRILEILV 188
           PS K  N +L+ L+
Sbjct: 144 PSVKIYNHVLDTLL 157

[Close]
BLAST of Carg27429 vs. Swiss-Prot
Match: sp|Q9SS81|PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-08
Identity = 35/124 (28.23%), Postives = 64/124 (51.61%), Query Frame = 0 

Query: 72  SPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFSLIDDLLLS 131
           SP  V KL+ S+ +P  A  +FD A R P +  S+  +  ++ +L  ++  + +  ++  
Sbjct: 9   SPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVEL 68

Query: 132 FKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIE-FGCTPSSKQLNRILEILVSHR 191
            +S+       V   +IK YG+  +PD+AL  F  M E FGC P+ +  N +L   V  +
Sbjct: 69  IRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAK 128

Query: 192 NFIR 195
            +++
Sbjct: 129 QWVK 132

[Close]
BLAST of Carg27429 vs. TrEMBL
Match: tr|A0A1S3CIG1|A0A1S3CIG1_CUCME (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103501324 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.4e-110
Identity = 201/225 (89.33%), Postives = 209/225 (92.89%), Query Frame = 0 

Query: 4   HLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHKHLE 63
           HLLRP NY+T+ETVA H+A   PLLHN ISSSSSLYQP LNVHNE KTL  TNINHK  E
Sbjct: 4   HLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTL-ITNINHKQCE 63

Query: 64  QQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFS 123
            QPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSS LVLILKLGRSKYFS
Sbjct: 64  DQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFS 123

Query: 124 LIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRIL 183
           LIDDLLLSFKSRGYP++PT FSYIIKIYGEADLPDKALK FYTMIEFGCTPSSKQLNRIL
Sbjct: 124 LIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRIL 183

Query: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDL 229
           EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNIL+RAFCWNG++
Sbjct: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNI 227

[Close]
BLAST of Carg27429 vs. TrEMBL
Match: tr|A0A0A0K8U0|A0A0A0K8U0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014780 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.5e-107
Identity = 198/229 (86.46%), Postives = 210/229 (91.70%), Query Frame = 0 

Query: 1   MRQHLLRPCNYKTLETV-AVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINH 60
           M QHLLRPCNY+T+ETV A H+A K+PLL N ISSSSSLYQP LNVHNE K L  TN+ H
Sbjct: 1   MWQHLLRPCNYRTIETVAAAHVARKSPLLRNLISSSSSLYQPHLNVHNESKFL-ITNVKH 60

Query: 61  KHLEQQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRS 120
           +  E QPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSS LVLILKLGRS
Sbjct: 61  EQCEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRS 120

Query: 121 KYFSLIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQL 180
           KYFSLIDDLLLSFKSR YP++PT FSYIIKIYGEADLPDKALK FYTMI+FGCTPSSKQL
Sbjct: 121 KYFSLIDDLLLSFKSRRYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIDFGCTPSSKQL 180

Query: 181 NRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDL 229
           NRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNIL+RAFCWNG++
Sbjct: 181 NRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNI 228

[Close]
BLAST of Carg27429 vs. TrEMBL
Match: tr|V4VX64|V4VX64_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023955mg PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 119/160 (74.38%), Postives = 147/160 (91.88%), Query Frame = 0 

Query: 70  IGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFSLIDDLL 129
           IGSPCRVQKLIASQSDPLLAKEIFDYA RQP+FR S+S++L+LILKLGR+KYFSLIDD+L
Sbjct: 59  IGSPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDIL 118

Query: 130 LSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRILEILVSH 189
           ++ KS  YP++P++F+Y+IKIY E++LPD+ALKTF +M+EF C P  KQLNRILE+LV+H
Sbjct: 119 ITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTH 178

Query: 190 RNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLS 230
           RN++RPAFDLFK+A  HGVLPNTKSYNI+MRAFC+NGD+S
Sbjct: 179 RNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDIS 218

[Close]
BLAST of Carg27429 vs. TrEMBL
Match: tr|A0A2H5P0A2|A0A2H5P0A2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_092250 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 119/160 (74.38%), Postives = 147/160 (91.88%), Query Frame = 0 

Query: 70  IGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFSLIDDLL 129
           IGSPCRVQKLIASQSDPLLAKEIFDYA RQP+FR S+S++L+LILKLGR+KYFSLIDD+L
Sbjct: 59  IGSPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDIL 118

Query: 130 LSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRILEILVSH 189
           ++ KS  YP++P++F+Y+IKIY E++LPD+ALKTF +M+EF C P  KQLNRILE+LV+H
Sbjct: 119 ITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTH 178

Query: 190 RNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLS 230
           RN++RPAFDLFK+A  HGVLPNTKSYNI+MRAFC+NGD+S
Sbjct: 179 RNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDIS 218

[Close]
BLAST of Carg27429 vs. TrEMBL
Match: tr|A0A2P2QPK1|A0A2P2QPK1_RHIMU (Pentatricopeptide repeat-containing protein At4g01400-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 122/161 (75.78%), Postives = 144/161 (89.44%), Query Frame = 0 

Query: 69  SIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFSLIDDL 128
           +IGSP RVQKLIASQSDPLLAKEIFDYA RQP+F+ S SS+LVLILKLGRSKYFSLIDDL
Sbjct: 60  AIGSPARVQKLIASQSDPLLAKEIFDYASRQPNFQHSYSSYLVLILKLGRSKYFSLIDDL 119

Query: 129 LLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRILEILVS 188
           ++  KS+GYPL+PT+F Y+IK+YGEA+LPDKA++TFYTM+EF C P  K LNRILE+LV 
Sbjct: 120 VIDLKSKGYPLTPTLFYYMIKVYGEANLPDKAMRTFYTMLEFNCKPLPKHLNRILEVLVV 179

Query: 189 HRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLS 230
           H+N++RPAFDLF++A  HGVLPNT+SYNILMRAFC NG LS
Sbjct: 180 HQNYVRPAFDLFRDAHRHGVLPNTQSYNILMRAFCTNGKLS 220

The following BLAST results are available for this feature:
BLAST of Carg27429 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932826.12.5e-12799.56pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucur... [more]
XP_023515125.11.8e-12597.82pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucur... [more]
XP_022974029.15.2e-12597.38pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucur... [more]
XP_008463091.13.6e-11089.33PREDICTED: pentatricopeptide repeat-containing protein At4g01400, mitochondrial-... [more]
XP_004138384.12.2e-10786.46PREDICTED: pentatricopeptide repeat-containing protein At4g01400, mitochondrial-... [more]
BLAST of Carg27429 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G01400.11.6e-5963.69FUNCTIONS IN: molecular_function unknown[more]
AT3G14580.16.6e-1328.30Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G16420.19.5e-1226.25Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G48810.12.3e-1029.85Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G09060.16.8e-1028.23Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg27429 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LDU5|PP298_ARATH2.9e-5863.69Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidop... [more]
sp|Q9LUD6|PP230_ARATH1.2e-1128.30Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidop... [more]
sp|Q9FFE3|PP388_ARATH1.7e-1026.25Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop... [more]
sp|Q9M302|PP270_ARATH4.2e-0929.85Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX... [more]
sp|Q9SS81|PP221_ARATH1.2e-0828.23Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg27429 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CIG1|A0A1S3CIG1_CUCME2.4e-11089.33pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like OS=Cuc... [more]
tr|A0A0A0K8U0|A0A0A0K8U0_CUCSA1.5e-10786.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014780 PE=4 SV=1[more]
tr|V4VX64|V4VX64_9ROSI1.1e-6574.38Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023... [more]
tr|A0A2H5P0A2|A0A2H5P0A2_CITUN1.1e-6574.38Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_092250 PE=4 SV=1[more]
tr|A0A2P2QPK1|A0A2P2QPK1_RHIMU1.1e-6575.78Pentatricopeptide repeat-containing protein At4g01400-like OS=Rhizophora mucrona... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27429-RACarg27429-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 210..259
e-value: 5.6E-15
score: 55.2
coord: 315..364
e-value: 4.7E-14
score: 52.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 143..172
e-value: 0.013
score: 15.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 214..247
e-value: 1.0E-5
score: 23.4
coord: 249..282
e-value: 8.9E-7
score: 26.7
coord: 353..385
e-value: 7.7E-6
score: 23.8
coord: 284..317
e-value: 1.7E-8
score: 32.1
coord: 143..175
e-value: 2.0E-4
score: 19.3
coord: 320..351
e-value: 1.2E-8
score: 32.6
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 276..309
e-value: 7.3E-9
score: 35.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 386..420
score: 7.837
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 246..280
score: 11.466
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 211..245
score: 11.444
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 140..174
score: 9.372
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 175..210
score: 6.489
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 281..315
score: 12.233
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 421..455
score: 6.61
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 351..385
score: 10.786
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 105..139
score: 5.393
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 316..350
score: 11.838
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 55..191
e-value: 1.7E-12
score: 49.0
coord: 192..299
e-value: 1.4E-29
score: 104.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 300..468
e-value: 3.2E-31
score: 111.0
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 19..480
NoneNo IPR availablePANTHERPTHR24015:SF996SUBFAMILY NOT NAMEDcoord: 19..480