Carg26703-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AACTTTGTTGTTCATCTTAATTGGATTTGCAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAACTTTGTTGTTCATCTTAATTGGGTTTGAAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAATTTTGTTGTTTTTGGTTGGTTGATTTAGTCTTACACTACGAATAGTGCGAAAGTGGTGTTTCTGAACCAAAGGCCACAGACCAGAAACTTCCGAGGCTCCTCCGGCAACCTCTGCAGCACCTGCGATAGAAGCCTTCAAGATCCTTATCTCTTTTGCTCTCTTTCCTGCAAGGTTTAATTTCAAAATCCCCTTTCGATTTTCAATCATCTTCTGTTATGAACGTTGGTTTCGTTTCACAGATTGATTTTCTAATGAAGACGGAAGGTGGCGTTTCGAGGAATCTCTTGGAGTGTAATTTCTCGGCATGGGACGACGGGCTCATGATGACACCAGACTCTGTTCTCGAACTCGGTGGTTCGAACCAAACCTCCTCCGGTTCCGACGGCGGTGGTGTAGAAGGAGGGAGGAGTGTAGTAGTGTCGACGGCAACGACGGAGTTCGTGAAGAAAAAGAGAAGTAGCTTGACGGCGGCGTATAGGGCAGCGTGCCGGCCGGCTTGCTGGCCAGGGACGATTTCCGAGACGTCTGGGAGTTTATTGAGCCGGAGAAAAGGTACCCCACAGCGGGCCCCACTCTATTGA AACTTTGTTGTTCATCTTAATTGGATTTGCAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAACTTTGTTGTTCATCTTAATTGGGTTTGAAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAATTTTGTTGTTTTTGGTTGGTTGATTTAGTCTTACACTACGAATAGTGCGAAAGTGGTGTTTCTGAACCAAAGGCCACAGACCAGAAACTTCCGAGGCTCCTCCGGCAACCTCTGCAGCACCTGCGATAGAAGCCTTCAAGATCCTTATCTCTTTTGCTCTCTTTCCTGCAAGATTGATTTTCTAATGAAGACGGAAGGTGGCGTTTCGAGGAATCTCTTGGAGTGTAATTTCTCGGCATGGGACGACGGGCTCATGATGACACCAGACTCTGTTCTCGAACTCGGTGGTTCGAACCAAACCTCCTCCGGTTCCGACGGCGGTGGTGTAGAAGGAGGGAGGAGTGTAGTAGTGTCGACGGCAACGACGGAGTTCGTGAAGAAAAAGAGAAGTAGCTTGACGGCGGCGTATAGGGCAGCGTGCCGGCCGGCTTGCTGGCCAGGGACGATTTCCGAGACGTCTGGGAGTTTATTGAGCCGGAGAAAAGGTACCCCACAGCGGGCCCCACTCTATTGA ATGAAGACGGAAGGTGGCGTTTCGAGGAATCTCTTGGAGTGTAATTTCTCGGCATGGGACGACGGGCTCATGATGACACCAGACTCTGTTCTCGAACTCGGTGGTTCGAACCAAACCTCCTCCGGTTCCGACGGCGGTGGTGTAGAAGGAGGGAGGAGTGTAGTAGTGTCGACGGCAACGACGGAGTTCGTGAAGAAAAAGAGAAGTAGCTTGACGGCGGCGTATAGGGCAGCGTGCCGGCCGGCTTGCTGGCCAGGGACGATTTCCGAGACGTCTGGGAGTTTATTGAGCCGGAGAAAAGGTACCCCACAGCGGGCCCCACTCTATTGA MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVVVSTATTEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY
BLAST of Carg26703-RA vs. NCBI nr
Match: XP_022959264.1 (uncharacterized protein LOC111460295 [Cucurbita moschata]) HSP 1 Score: 156.4 bits (394), Expect = 5.6e-35 Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0
BLAST of Carg26703-RA vs. NCBI nr
Match: XP_023006650.1 (uncharacterized protein LOC111499311 [Cucurbita maxima]) HSP 1 Score: 149.1 bits (375), Expect = 9.0e-33 Identity = 77/110 (70.00%), Postives = 78/110 (70.91%), Query Frame = 0
BLAST of Carg26703-RA vs. NCBI nr
Match: XP_023548824.1 (uncharacterized protein LOC111807359 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 140.6 bits (353), Expect = 3.2e-30 Identity = 104/110 (94.55%), Postives = 104/110 (94.55%), Query Frame = 0
BLAST of Carg26703-RA vs. NCBI nr
Match: XP_008458138.1 (PREDICTED: uncharacterized protein LOC103497663 [Cucumis melo]) HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23 Identity = 66/115 (57.39%), Postives = 72/115 (62.61%), Query Frame = 0
BLAST of Carg26703-RA vs. NCBI nr
Match: XP_011656872.1 (PREDICTED: uncharacterized protein LOC101214475 [Cucumis sativus] >KGN46574.1 hypothetical protein Csa_6G109690 [Cucumis sativus]) HSP 1 Score: 114.4 bits (285), Expect = 2.5e-22 Identity = 90/115 (78.26%), Postives = 98/115 (85.22%), Query Frame = 0
BLAST of Carg26703-RA vs. TrEMBL
Match: tr|A0A1S3C8E3|A0A1S3C8E3_CUCME (uncharacterized protein LOC103497663 OS=Cucumis melo OX=3656 GN=LOC103497663 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23 Identity = 66/115 (57.39%), Postives = 72/115 (62.61%), Query Frame = 0
BLAST of Carg26703-RA vs. TrEMBL
Match: tr|A0A0A0KCM1|A0A0A0KCM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109690 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22 Identity = 90/115 (78.26%), Postives = 98/115 (85.22%), Query Frame = 0
BLAST of Carg26703-RA vs. TrEMBL
Match: tr|A0A1S2Z351|A0A1S2Z351_CICAR (uncharacterized protein LOC101508954 OS=Cicer arietinum OX=3827 GN=LOC101508954 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11 Identity = 48/114 (42.11%), Postives = 60/114 (52.63%), Query Frame = 0
BLAST of Carg26703-RA vs. TrEMBL
Match: tr|A0A2P5CLI4|A0A2P5CLI4_9ROSA (B-box-type zinc finger OS=Trema orientalis OX=63057 GN=TorRG33x02_280680 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10 Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = 0
BLAST of Carg26703-RA vs. TrEMBL
Match: tr|A0A2P5BES1|A0A2P5BES1_PARAD (B-box-type zinc finger OS=Parasponia andersonii OX=3476 GN=PanWU01x14_245370 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10 Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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