Carg26703 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26703
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	B-box-type zinc finger
Location	Cucurbita_argyrosperma_scaffold_280 : 75122 .. 75869 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTTGTTGTTCATCTTAATTGGATTTGCAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAACTTTGTTGTTCATCTTAATTGGGTTTGAAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAATTTTGTTGTTTTTGGTTGGTTGATTTAGTCTTACACTACGAATAGTGCGAAAGTGGTGTTTCTGAACCAAAGGCCACAGACCAGAAACTTCCGAGGCTCCTCCGGCAACCTCTGCAGCACCTGCGATAGAAGCCTTCAAGATCCTTATCTCTTTTGCTCTCTTTCCTGCAAGGTTTAATTTCAAAATCCCCTTTCGATTTTCAATCATCTTCTGTTATGAACGTTGGTTTCGTTTCACAGATTGATTTTCTAATGAAGACGGAAGGTGGCGTTTCGAGGAATCTCTTGGAGTGTAATTTCTCGGCATGGGACGACGGGCTCATGATGACACCAGACTCTGTTCTCGAACTCGGTGGTTCGAACCAAACCTCCTCCGGTTCCGACGGCGGTGGTGTAGAAGGAGGGAGGAGTGTAGTAGTGTCGACGGCAACGACGGAGTTCGTGAAGAAAAAGAGAAGTAGCTTGACGGCGGCGTATAGGGCAGCGTGCCGGCCGGCTTGCTGGCCAGGGACGATTTCCGAGACGTCTGGGAGTTTATTGAGCCGGAGAAAAGGTACCCCACAGCGGGCCCCACTCTATTGA

mRNA sequence

AACTTTGTTGTTCATCTTAATTGGATTTGCAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAACTTTGTTGTTCATCTTAATTGGGTTTGAAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAATTTTGTTGTTTTTGGTTGGTTGATTTAGTCTTACACTACGAATAGTGCGAAAGTGGTGTTTCTGAACCAAAGGCCACAGACCAGAAACTTCCGAGGCTCCTCCGGCAACCTCTGCAGCACCTGCGATAGAAGCCTTCAAGATCCTTATCTCTTTTGCTCTCTTTCCTGCAAGATTGATTTTCTAATGAAGACGGAAGGTGGCGTTTCGAGGAATCTCTTGGAGTGTAATTTCTCGGCATGGGACGACGGGCTCATGATGACACCAGACTCTGTTCTCGAACTCGGTGGTTCGAACCAAACCTCCTCCGGTTCCGACGGCGGTGGTGTAGAAGGAGGGAGGAGTGTAGTAGTGTCGACGGCAACGACGGAGTTCGTGAAGAAAAAGAGAAGTAGCTTGACGGCGGCGTATAGGGCAGCGTGCCGGCCGGCTTGCTGGCCAGGGACGATTTCCGAGACGTCTGGGAGTTTATTGAGCCGGAGAAAAGGTACCCCACAGCGGGCCCCACTCTATTGA

Coding sequence (CDS)

ATGAAGACGGAAGGTGGCGTTTCGAGGAATCTCTTGGAGTGTAATTTCTCGGCATGGGACGACGGGCTCATGATGACACCAGACTCTGTTCTCGAACTCGGTGGTTCGAACCAAACCTCCTCCGGTTCCGACGGCGGTGGTGTAGAAGGAGGGAGGAGTGTAGTAGTGTCGACGGCAACGACGGAGTTCGTGAAGAAAAAGAGAAGTAGCTTGACGGCGGCGTATAGGGCAGCGTGCCGGCCGGCTTGCTGGCCAGGGACGATTTCCGAGACGTCTGGGAGTTTATTGAGCCGGAGAAAAGGTACCCCACAGCGGGCCCCACTCTATTGA

Protein sequence

MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVVVSTATTEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY

Homology

[Close]

BLAST of Carg26703 vs. NCBI nr
Match: XP_022959264.1 (uncharacterized protein LOC111460295 [Cucurbita moschata])

HSP 1 Score: 156.4 bits (394), Expect = 5.6e-35
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTXXXXXXXXXXXXXXXXXXXXX 60
           MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQT XXXXXXXXXXXXXXXXXXXX
Sbjct: 135 MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSXXXXXXXXXXXXXXXXXXXX 194

Query: 61  XXXXXXXXXSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           XXXXXXXX SLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY
Sbjct: 195 XXXXXXXXSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 243

[Close]

BLAST of Carg26703 vs. NCBI nr
Match: XP_023006650.1 (uncharacterized protein LOC111499311 [Cucurbita maxima])

HSP 1 Score: 149.1 bits (375), Expect = 9.0e-33
Identity = 77/110 (70.00%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQT-XXXXXXXXXXXXXXXXXXXX 60
           MKTEGGVSRN+LECNFSAWDDGLMMTPDSVLE GGSNQT                     
Sbjct: 135 MKTEGGVSRNVLECNFSAWDDGLMMTPDSVLEFGGSNQTSSGSDGSGVEEGGRSVVASTA 194

Query: 61  XXXXXXXXXXSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
                     SLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY
Sbjct: 195 TTDFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 244

[Close]

BLAST of Carg26703 vs. NCBI nr
Match: XP_023548824.1 (uncharacterized protein LOC111807359 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 3.2e-30
Identity = 104/110 (94.55%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGS-NQTXXXXXXXXXXXXXXXXXXXX 60
           MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGS    XXXXXXXXXXXXXXXXXXXX
Sbjct: 135 MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSXXXXXXXXXXXXXXXXXXXXXXXX 194

Query: 61  XXXXXXXXXXSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           XXXXXXXXXX  TAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY
Sbjct: 195 XXXXXXXXXXXXTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 244

[Close]

BLAST of Carg26703 vs. NCBI nr
Match: XP_008458138.1 (PREDICTED: uncharacterized protein LOC103497663 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 66/115 (57.39%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNF-----SAWDDGLMMTPDSVLELGGSNQTXXXXXXXXXXXXXXXX 60
           +KT+GG+S+ LLECNF       WDDGLMMTPDSVLE  GS +T                
Sbjct: 135 VKTQGGISKYLLECNFLPLPEPGWDDGLMMTPDSVLEPVGSTRT--SSGSDGGGTEGKTL 194

Query: 61  XXXXXXXXXXXXXXSLT-AAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
                         SLT AAYRAACRP CWPGTISETSGSL+SRRKGTPQRAPLY
Sbjct: 195 VSTATTEFVKKKRSSLTAAAYRAACRPVCWPGTISETSGSLMSRRKGTPQRAPLY 247

[Close]

BLAST of Carg26703 vs. NCBI nr
Match: XP_011656872.1 (PREDICTED: uncharacterized protein LOC101214475 [Cucumis sativus] >KGN46574.1 hypothetical protein Csa_6G109690 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 2.5e-22
Identity = 90/115 (78.26%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNF-----SAWDDGLMMTPDSVLELGGSNQ-TXXXXXXXXXXXXXXX 60
           +KT+GG+S++LLECNF       WDDGLMMTPDSVLE  GSN+ + XXXXXXXXXXXXXX
Sbjct: 135 VKTQGGISKHLLECNFLPLPEPGWDDGLMMTPDSVLEPVGSNRSSSXXXXXXXXXXXXXX 194

Query: 61  XXXXXXXXXXXXXXXSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           XXXXXXXXXXXXXXX     YRAACRP CWPGTISETSGSL+SRRKGTPQRAPLY
Sbjct: 195 XXXXXXXXXXXXXXXXXXXXYRAACRPVCWPGTISETSGSLMSRRKGTPQRAPLY 249

[Close]

BLAST of Carg26703 vs. TrEMBL
Match: tr|A0A1S3C8E3|A0A1S3C8E3_CUCME (uncharacterized protein LOC103497663 OS=Cucumis melo OX=3656 GN=LOC103497663 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 66/115 (57.39%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNF-----SAWDDGLMMTPDSVLELGGSNQTXXXXXXXXXXXXXXXX 60
           +KT+GG+S+ LLECNF       WDDGLMMTPDSVLE  GS +T                
Sbjct: 135 VKTQGGISKYLLECNFLPLPEPGWDDGLMMTPDSVLEPVGSTRT--SSGSDGGGTEGKTL 194

Query: 61  XXXXXXXXXXXXXXSLT-AAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
                         SLT AAYRAACRP CWPGTISETSGSL+SRRKGTPQRAPLY
Sbjct: 195 VSTATTEFVKKKRSSLTAAAYRAACRPVCWPGTISETSGSLMSRRKGTPQRAPLY 247

[Close]

BLAST of Carg26703 vs. TrEMBL
Match: tr|A0A0A0KCM1|A0A0A0KCM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109690 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 90/115 (78.26%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNF-----SAWDDGLMMTPDSVLELGGSNQ-TXXXXXXXXXXXXXXX 60
           +KT+GG+S++LLECNF       WDDGLMMTPDSVLE  GSN+ + XXXXXXXXXXXXXX
Sbjct: 135 VKTQGGISKHLLECNFLPLPEPGWDDGLMMTPDSVLEPVGSNRSSSXXXXXXXXXXXXXX 194

Query: 61  XXXXXXXXXXXXXXXSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           XXXXXXXXXXXXXXX     YRAACRP CWPGTISETSGSL+SRRKGTPQRAPLY
Sbjct: 195 XXXXXXXXXXXXXXXXXXXXYRAACRPVCWPGTISETSGSLMSRRKGTPQRAPLY 249

[Close]

BLAST of Carg26703 vs. TrEMBL
Match: tr|A0A1S2Z351|A0A1S2Z351_CICAR (uncharacterized protein LOC101508954 OS=Cicer arietinum OX=3827 GN=LOC101508954 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11
Identity = 48/114 (42.11%), Postives = 60/114 (52.63%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNF-----SAWDDGLMMTPDSVLELGGSNQTXXXXXXXXXXXXXXXX 60
           +KT G +S  L ECN+     S  DDGL+MTPDSVLE  GSN+T                
Sbjct: 139 VKTLGSLSGYLFECNYMPLSDSGLDDGLIMTPDSVLEPAGSNRT-SSGSGGYDGVDCRTT 198

Query: 61  XXXXXXXXXXXXXXSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
                         S  + +R  CRPAC P  ++E S +L++RRKGTPQRAPLY
Sbjct: 199 LACTATTEIVRKKRSGVSTFRPPCRPACSP--VTEISVNLMNRRKGTPQRAPLY 249

[Close]

BLAST of Carg26703 vs. TrEMBL
Match: tr|A0A2P5CLI4|A0A2P5CLI4_9ROSA (B-box-type zinc finger OS=Trema orientalis OX=63057 GN=TorRG33x02_280680 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAW-----DDGLMMTPDSVLELGGSNQTXXXXXXXXXXXXXXXX 60
           ++TEGG+S  L EC F +      +DG M+TPDSVLE  GS +T                
Sbjct: 145 IRTEGGLSNYLFECKFLSLPEPGPEDG-MITPDSVLEPSGSARTSSGSGGNGSVGCRNLA 204

Query: 61  XXXXXXXXXXXXXXSLTAAYRAACRPACWPGTISETS-GSLLSRRKGTPQRAPLY 110
                         S  +AYRAACRP C P  +SE S  +L++RRKG PQRAPLY
Sbjct: 205 CTAATADQIVRKKRSSVSAYRAACRPVCSP--VSEISAAALMNRRKGNPQRAPLY 256

[Close]

BLAST of Carg26703 vs. TrEMBL
Match: tr|A0A2P5BES1|A0A2P5BES1_PARAD (B-box-type zinc finger OS=Parasponia andersonii OX=3476 GN=PanWU01x14_245370 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAW-----DDGLMMTPDSVLELGGSNQTXXXXXXXXXXXXXXXX 60
           ++TEGG+S  L EC F +      +DGL +TPDSVLE  GS +T                
Sbjct: 145 IRTEGGLSNYLFECKFLSLPEPGPEDGL-ITPDSVLEPSGSARTSSGSGGNGSVGCRNLA 204

Query: 61  XXXXXXXXXXXXXXSLTAAYRAACRPACWPGTISETS-GSLLSRRKGTPQRAPLY 110
                         S  +AYRAACRP C P  +SE S  +L++RRKG PQRAPLY
Sbjct: 205 CTAATADQIVRKKRSSVSAYRAACRPVCSP--VSEISAAALMNRRKGNPQRAPLY 256

The following BLAST results are available for this feature:

BLAST of Carg26703 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959264.1	5.6e-35	98.17	uncharacterized protein LOC111460295 [Cucurbita moschata]	[more]
XP_023006650.1	9.0e-33	70.00	uncharacterized protein LOC111499311 [Cucurbita maxima]	[more]
XP_023548824.1	3.2e-30	94.55	uncharacterized protein LOC111807359 [Cucurbita pepo subsp. pepo]	[more]
XP_008458138.1	1.7e-23	57.39	PREDICTED: uncharacterized protein LOC103497663 [Cucumis melo]	[more]
XP_011656872.1	2.5e-22	78.26	PREDICTED: uncharacterized protein LOC101214475 [Cucumis sativus] >KGN46574.1 hy...	[more]

BLAST of Carg26703 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg26703 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26703 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C8E3\|A0A1S3C8E3_CUCME	1.1e-23	57.39	uncharacterized protein LOC103497663 OS=Cucumis melo OX=3656 GN=LOC103497663 PE=...	[more]
tr\|A0A0A0KCM1\|A0A0A0KCM1_CUCSA	1.6e-22	78.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109690 PE=4 SV=1	[more]
tr\|A0A1S2Z351\|A0A1S2Z351_CICAR	3.7e-11	42.11	uncharacterized protein LOC101508954 OS=Cicer arietinum OX=3827 GN=LOC101508954 ...	[more]
tr\|A0A2P5CLI4\|A0A2P5CLI4_9ROSA	2.4e-10	41.74	B-box-type zinc finger OS=Trema orientalis OX=63057 GN=TorRG33x02_280680 PE=4 SV...	[more]
tr\|A0A2P5BES1\|A0A2P5BES1_PARAD	3.2e-10	41.74	B-box-type zinc finger OS=Parasponia andersonii OX=3476 GN=PanWU01x14_245370 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26703-RA	Carg26703-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..109
None	No IPR available	PANTHER	PTHR31065:SF1	SUBFAMILY NOT NAMED	coord: 7..109
None	No IPR available	PANTHER	PTHR31065	FAMILY NOT NAMED	coord: 7..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26703	CmoCh17G004500	Cucurbita moschata (Rifu)	carcmoB0759

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26703	Wax gourd	carwgoB0667
Carg26703	Silver-seed gourd	carcarB518
Carg26703	Cucumber (Gy14) v2	carcgybB0563
Carg26703	Cucumber (Gy14) v1	carcgyB0636
Carg26703	Cucurbita maxima (Rimu)	carcmaB0780
Carg26703	Cucurbita maxima (Rimu)	carcmaB0781
Carg26703	Cucurbita moschata (Rifu)	carcmoB0760
Carg26703	Cucurbita pepo (Zucchini)	carcpeB0793
Carg26703	Cucurbita pepo (Zucchini)	carcpeB0794
Carg26703	Wild cucumber (PI 183967)	carcpiB0593
Carg26703	Cucumber (Chinese Long) v2	carcuB0587
Carg26703	Cucumber (Chinese Long) v3	carcucB0595
Carg26703	Bottle gourd (USVL1VR-Ls)	carlsiB506
Carg26703	Melon (DHL92) v3.5.1	carmeB0563
Carg26703	Melon (DHL92) v3.6.1	carmedB0569
Carg26703	Watermelon (Charleston Gray)	carwcgB0544
Carg26703	Watermelon (97103) v1	carwmB0556
Carg26703	Watermelon (97103) v2	carwmbB0584