Carg27474-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27474-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	peptidyl-tRNA hydrolase 2, mitochondrial-like
Location	Cucurbita_argyrosperma_scaffold_422 : 683 .. 1067 (-)
Sequence length	267

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTGACATGGCTGAGTGCCATTGTAGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGCCAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTCTGTCTCTCTGTTTCTCTCTTGCTGTCTATTGGAAAATCATTCTCGACGACTTTAAGACGTTCTCTCTTTTACTCTCTCTAAAAAAATATAACAACATTTCACTGTGTCTCTTCAGGTTTTAGTTGTGAGAAATGATTTGAAAATGGGAAAAGGAAAAAAATTGCTGCTCAATGCA

mRNA sequence

ATGGATCTGACATGGCTGAGTGCCATTGTAGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGCCAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTTTTAGTTGTGAGAAATGATTTGAAAATGGGAAAAGGAAAAAAATTGCTGCTCAATGCA

Coding sequence (CDS)

ATGGATCTGACATGGCTGAGTGCCATTGTAGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGCCAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTTTTAGTTGTGAGAAATGATTTGAAAATGGGAAAAGGAAAAAAATTGCTGCTCAATGCA

Protein sequence

MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGKKLLLNA

Homology

[Close]

BLAST of Carg27474-RA vs. NCBI nr
Match: XP_023511828.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.6 bits (418), Expect = 7.6e-38
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKA+LAKINQSSRNGKKDKPKEPLEVENL
Sbjct: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKARLAKINQSSRNGKKDKPKEPLEVENL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILDDFKMVLVVRNDLKMGKGK 83

[Close]

BLAST of Carg27474-RA vs. NCBI nr
Match: XP_022944765.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 9.9e-38
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL
Sbjct: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADILDDFKMVLVVRNDLK+GKGK
Sbjct: 61 ADILDDFKMVLVVRNDLKIGKGK 83

[Close]

BLAST of Carg27474-RA vs. NCBI nr
Match: XP_022986617.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLS IVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL
Sbjct: 1  MDLTWLS-IVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILDDFKMVLVVRNDLKMGKGK 82

[Close]

BLAST of Carg27474-RA vs. NCBI nr
Match: XP_022947215.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita moschata] >XP_022947216.1 peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita moschata] >XP_022947217.1 peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 152.9 bits (385), Expect = 5.1e-34
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSAIVVGA CLVLGYCIGSKYPPRIFIKAKLAK N+SSR GKK  PKEPLEVENL
Sbjct: 1  MDLTWLSAIVVGAGCLVLGYCIGSKYPPRIFIKAKLAKSNESSRTGKKXXPKEPLEVENL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADIL+DFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILEDFKMVLVVRNDLKMGKGK 83

[Close]

BLAST of Carg27474-RA vs. NCBI nr
Match: XP_023533748.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023533749.1 peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023533750.1 peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.5 bits (384), Expect = 6.6e-34
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSAIVVGA CLVLGYCIGSKYPPRIFIKAKLAK N+SSR+GKK K KEPLEVENL
Sbjct: 1  MDLTWLSAIVVGAGCLVLGYCIGSKYPPRIFIKAKLAKSNESSRSGKKGKAKEPLEVENL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADIL+DFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILEDFKMVLVVRNDLKMGKGK 83

[Close]

BLAST of Carg27474-RA vs. TAIR10
Match: AT5G16870.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-17
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSA++VGA+   LGYCIG++       K  +A ++   ++ K    K PLE+E L
Sbjct: 1  MDLTWLSALIVGAA---LGYCIGTRRS-----KPVVAAVD---KDIKTQSSKSPLEIEKL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILDDFKMVLVVRNDLKMGKGK 72

[Close]

BLAST of Carg27474-RA vs. TAIR10
Match: AT3G03010.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-16
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MDLTW-LSAIVVGASCLVLGYCIGS-KYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVE 60
          MDL W LS ++VGA+   LGY I + +   RIF+ +K   I+  S   KK K KEPLE+E
Sbjct: 1  MDLVWLLSVLLVGAA---LGYYISTLRQTRRIFLSSKSVAIDAGSSGNKKTKSKEPLEIE 60

Query: 61 NLADILDDFKMVLVVRNDLKMGKGK 84
           LAD   +FKMVLVVRNDLKMGKGK
Sbjct: 61 KLADFRKNFKMVLVVRNDLKMGKGK 82

[Close]

BLAST of Carg27474-RA vs. TrEMBL
Match: tr|A0A1S3C945|A0A1S3C945_CUCME (peptidyl-tRNA hydrolase 2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103498393 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNG-KKDKPKEPLEVEN 60
          MDL WLSAIVVGA CLVLGY IGSKYPPR+F+KAKLAK N+SSRNG KKDK KEPLEVEN
Sbjct: 1  MDLAWLSAIVVGAGCLVLGYYIGSKYPPRVFVKAKLAKSNESSRNGKKKDKTKEPLEVEN 60

Query: 61 LADILDDFKMVLVVRNDLKMGKGK 84
          LADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 LADILDDFKMVLVVRNDLKMGKGK 84

[Close]

BLAST of Carg27474-RA vs. TrEMBL
Match: tr|A0A0A0LTR6|A0A0A0LTR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G437060 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNG-KKDKPKEPLEVEN 60
          MDL WLSAIVVGA CLVLGY IGSKYPPR+F+KAKLAK N+SSRNG KKDK KEPLEVEN
Sbjct: 1  MDLAWLSAIVVGAGCLVLGYYIGSKYPPRVFVKAKLAKSNESSRNGKKKDKTKEPLEVEN 60

Query: 61 LADILDDFKMVLVVRNDLKMGKGK 84
          LADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 LADILDDFKMVLVVRNDLKMGKGK 84

[Close]

BLAST of Carg27474-RA vs. TrEMBL
Match: tr|A0A2I0L3J7|A0A2I0L3J7_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_004325 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.4e-25
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSAI+VGA CL LGY IG ++P  IF  A++AK + +S +GKK+KPKEPLE+E L
Sbjct: 1  MDLTWLSAIIVGAGCLALGYYIGERHPSFIFFPARVAKESSASNSGKKNKPKEPLEIEKL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          A+I++DFKMVLVVRNDLKMGKGK
Sbjct: 61 AEIMEDFKMVLVVRNDLKMGKGK 83

[Close]

BLAST of Carg27474-RA vs. TrEMBL
Match: tr|A0A067JD80|A0A067JD80_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00549 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDL WLSAI+VGA CL LGYCIGS+ P  IF++AK+ K     +  +K K KEPLE+E L
Sbjct: 1  MDLGWLSAILVGAGCLALGYCIGSRRPAFIFLRAKVVKDANFGKGNEKKKSKEPLEIEKL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILDDFKMVLVVRNDLKMGKGK 83

[Close]

BLAST of Carg27474-RA vs. TrEMBL
Match: tr|A0A2C9VCI0|A0A2C9VCI0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G126400 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-23
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNG-KKDKPKEPLEVEN 60
          MDL WLSAI+VGA CL LGYCIGS  P  IF++ K+AK +    NG KK+K KEPLE+E 
Sbjct: 1  MDLRWLSAILVGAGCLALGYCIGSHRPAFIFLRTKVAKDDTLFGNGNKKNKSKEPLEIEK 60

Query: 61 LADILDDFKMVLVVRNDLKMGKGK 84
          LADILDDFKM+LVVRNDLKMGKGK
Sbjct: 61 LADILDDFKMILVVRNDLKMGKGK 84

The following BLAST results are available for this feature:

BLAST of Carg27474-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511828.1	7.6e-38	98.80	peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita pepo subsp. ...	[more]
XP_022944765.1	9.9e-38	98.80	peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita moschata]	[more]
XP_022986617.1	2.4e-36	98.80	peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita maxima]	[more]
XP_022947215.1	5.1e-34	91.57	peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita moschata] >XP_022947216...	[more]
XP_023533748.1	6.6e-34	91.57	peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]

BLAST of Carg27474-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16870.1	1.4e-17	59.04	Peptidyl-tRNA hydrolase II (PTH2) family protein	[more]
AT3G03010.1	2.6e-16	56.47	Peptidyl-tRNA hydrolase II (PTH2) family protein	[more]

BLAST of Carg27474-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27474-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C945\|A0A1S3C945_CUCME	1.8e-32	89.29	peptidyl-tRNA hydrolase 2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LTR6\|A0A0A0LTR6_CUCSA	1.8e-32	89.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G437060 PE=4 SV=1	[more]
tr\|A0A2I0L3J7\|A0A2I0L3J7_PUNGR	6.4e-25	69.88	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_004325 PE=4 SV=1	[more]
tr\|A0A067JD80\|A0A067JD80_JATCU	2.0e-23	69.88	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00549 PE=4 SV=1	[more]
tr\|A0A2C9VCI0\|A0A2C9VCI0_MANES	2.7e-23	71.43	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G126400 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR023476	Pep_tRNA_hydro_II_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg27474	Carg27474	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27474-RA.CDS.2	Carg27474-RA.CDS.2	CDS
Carg27474-RA.CDS.1	Carg27474-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27474-RA.exon.2	Carg27474-RA.exon.2	exon
Carg27474-RA.exon.1	Carg27474-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg27474-RA	Carg27474-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023476	Peptidyl-tRNA hydrolase II domain superfamily	SUPERFAMILY	SSF102462	Peptidyl-tRNA hydrolase II	coord: 65..84