Carg27474 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27474
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	peptidyl-tRNA hydrolase 2, mitochondrial-like
Location	Cucurbita_argyrosperma_scaffold_422 : 683 .. 1067 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTGACATGGCTGAGTGCCATTGTAGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGCCAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTCTGTCTCTCTGTTTCTCTCTTGCTGTCTATTGGAAAATCATTCTCGACGACTTTAAGACGTTCTCTCTTTTACTCTCTCTAAAAAAATATAACAACATTTCACTGTGTCTCTTCAGGTTTTAGTTGTGAGAAATGATTTGAAAATGGGAAAAGGAAAAAAATTGCTGCTCAATGCA

mRNA sequence

ATGGATCTGACATGGCTGAGTGCCATTGTAGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGCCAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTTTTAGTTGTGAGAAATGATTTGAAAATGGGAAAAGGAAAAAAATTGCTGCTCAATGCA

Coding sequence (CDS)

ATGGATCTGACATGGCTGAGTGCCATTGTAGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGCCAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTTTTAGTTGTGAGAAATGATTTGAAAATGGGAAAAGGAAAAAAATTGCTGCTCAATGCA

Protein sequence

MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGKKLLLNA

Homology

[Close]

BLAST of Carg27474 vs. NCBI nr
Match: XP_023511828.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.6 bits (418), Expect = 7.6e-38
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKA+LAKINQSSRNGKKDKPKEPLEVENL
Sbjct: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKARLAKINQSSRNGKKDKPKEPLEVENL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILDDFKMVLVVRNDLKMGKGK 83

[Close]

BLAST of Carg27474 vs. NCBI nr
Match: XP_022944765.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 9.9e-38
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL
Sbjct: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADILDDFKMVLVVRNDLK+GKGK
Sbjct: 61 ADILDDFKMVLVVRNDLKIGKGK 83

[Close]

BLAST of Carg27474 vs. NCBI nr
Match: XP_022986617.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLS IVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL
Sbjct: 1  MDLTWLS-IVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILDDFKMVLVVRNDLKMGKGK 82

[Close]

BLAST of Carg27474 vs. NCBI nr
Match: XP_022947215.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita moschata] >XP_022947216.1 peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita moschata] >XP_022947217.1 peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 152.9 bits (385), Expect = 5.1e-34
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSAIVVGA CLVLGYCIGSKYPPRIFIKAKLAK N+SSR GKK  PKEPLEVENL
Sbjct: 1  MDLTWLSAIVVGAGCLVLGYCIGSKYPPRIFIKAKLAKSNESSRTGKKXXPKEPLEVENL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADIL+DFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILEDFKMVLVVRNDLKMGKGK 83

[Close]

BLAST of Carg27474 vs. NCBI nr
Match: XP_023533748.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023533749.1 peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023533750.1 peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.5 bits (384), Expect = 6.6e-34
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSAIVVGA CLVLGYCIGSKYPPRIFIKAKLAK N+SSR+GKK K KEPLEVENL
Sbjct: 1  MDLTWLSAIVVGAGCLVLGYCIGSKYPPRIFIKAKLAKSNESSRSGKKGKAKEPLEVENL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADIL+DFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILEDFKMVLVVRNDLKMGKGK 83

[Close]

BLAST of Carg27474 vs. TAIR10
Match: AT5G16870.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-17
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSA++VGA+   LGYCIG++       K  +A ++   ++ K    K PLE+E L
Sbjct: 1  MDLTWLSALIVGAA---LGYCIGTRRS-----KPVVAAVD---KDIKTQSSKSPLEIEKL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILDDFKMVLVVRNDLKMGKGK 72

[Close]

BLAST of Carg27474 vs. TAIR10
Match: AT3G03010.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-16
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MDLTW-LSAIVVGASCLVLGYCIGS-KYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVE 60
          MDL W LS ++VGA+   LGY I + +   RIF+ +K   I+  S   KK K KEPLE+E
Sbjct: 1  MDLVWLLSVLLVGAA---LGYYISTLRQTRRIFLSSKSVAIDAGSSGNKKTKSKEPLEIE 60

Query: 61 NLADILDDFKMVLVVRNDLKMGKGK 84
           LAD   +FKMVLVVRNDLKMGKGK
Sbjct: 61 KLADFRKNFKMVLVVRNDLKMGKGK 82

[Close]

BLAST of Carg27474 vs. TrEMBL
Match: tr|A0A1S3C945|A0A1S3C945_CUCME (peptidyl-tRNA hydrolase 2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103498393 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNG-KKDKPKEPLEVEN 60
          MDL WLSAIVVGA CLVLGY IGSKYPPR+F+KAKLAK N+SSRNG KKDK KEPLEVEN
Sbjct: 1  MDLAWLSAIVVGAGCLVLGYYIGSKYPPRVFVKAKLAKSNESSRNGKKKDKTKEPLEVEN 60

Query: 61 LADILDDFKMVLVVRNDLKMGKGK 84
          LADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 LADILDDFKMVLVVRNDLKMGKGK 84

[Close]

BLAST of Carg27474 vs. TrEMBL
Match: tr|A0A0A0LTR6|A0A0A0LTR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G437060 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNG-KKDKPKEPLEVEN 60
          MDL WLSAIVVGA CLVLGY IGSKYPPR+F+KAKLAK N+SSRNG KKDK KEPLEVEN
Sbjct: 1  MDLAWLSAIVVGAGCLVLGYYIGSKYPPRVFVKAKLAKSNESSRNGKKKDKTKEPLEVEN 60

Query: 61 LADILDDFKMVLVVRNDLKMGKGK 84
          LADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 LADILDDFKMVLVVRNDLKMGKGK 84

[Close]

BLAST of Carg27474 vs. TrEMBL
Match: tr|A0A2I0L3J7|A0A2I0L3J7_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_004325 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.4e-25
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDLTWLSAI+VGA CL LGY IG ++P  IF  A++AK + +S +GKK+KPKEPLE+E L
Sbjct: 1  MDLTWLSAIIVGAGCLALGYYIGERHPSFIFFPARVAKESSASNSGKKNKPKEPLEIEKL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          A+I++DFKMVLVVRNDLKMGKGK
Sbjct: 61 AEIMEDFKMVLVVRNDLKMGKGK 83

[Close]

BLAST of Carg27474 vs. TrEMBL
Match: tr|A0A067JD80|A0A067JD80_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00549 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENL 60
          MDL WLSAI+VGA CL LGYCIGS+ P  IF++AK+ K     +  +K K KEPLE+E L
Sbjct: 1  MDLGWLSAILVGAGCLALGYCIGSRRPAFIFLRAKVVKDANFGKGNEKKKSKEPLEIEKL 60

Query: 61 ADILDDFKMVLVVRNDLKMGKGK 84
          ADILDDFKMVLVVRNDLKMGKGK
Sbjct: 61 ADILDDFKMVLVVRNDLKMGKGK 83

[Close]

BLAST of Carg27474 vs. TrEMBL
Match: tr|A0A2C9VCI0|A0A2C9VCI0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G126400 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-23
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNG-KKDKPKEPLEVEN 60
          MDL WLSAI+VGA CL LGYCIGS  P  IF++ K+AK +    NG KK+K KEPLE+E 
Sbjct: 1  MDLRWLSAILVGAGCLALGYCIGSHRPAFIFLRTKVAKDDTLFGNGNKKNKSKEPLEIEK 60

Query: 61 LADILDDFKMVLVVRNDLKMGKGK 84
          LADILDDFKM+LVVRNDLKMGKGK
Sbjct: 61 LADILDDFKMILVVRNDLKMGKGK 84

The following BLAST results are available for this feature:

BLAST of Carg27474 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511828.1	7.6e-38	98.80	peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita pepo subsp. ...	[more]
XP_022944765.1	9.9e-38	98.80	peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita moschata]	[more]
XP_022986617.1	2.4e-36	98.80	peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita maxima]	[more]
XP_022947215.1	5.1e-34	91.57	peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita moschata] >XP_022947216...	[more]
XP_023533748.1	6.6e-34	91.57	peptidyl-tRNA hydrolase 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]

BLAST of Carg27474 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16870.1	1.4e-17	59.04	Peptidyl-tRNA hydrolase II (PTH2) family protein	[more]
AT3G03010.1	2.6e-16	56.47	Peptidyl-tRNA hydrolase II (PTH2) family protein	[more]

BLAST of Carg27474 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27474 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C945\|A0A1S3C945_CUCME	1.8e-32	89.29	peptidyl-tRNA hydrolase 2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LTR6\|A0A0A0LTR6_CUCSA	1.8e-32	89.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G437060 PE=4 SV=1	[more]
tr\|A0A2I0L3J7\|A0A2I0L3J7_PUNGR	6.4e-25	69.88	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_004325 PE=4 SV=1	[more]
tr\|A0A067JD80\|A0A067JD80_JATCU	2.0e-23	69.88	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00549 PE=4 SV=1	[more]
tr\|A0A2C9VCI0\|A0A2C9VCI0_MANES	2.7e-23	71.43	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G126400 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023476	Pep_tRNA_hydro_II_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27474-RA	Carg27474-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023476	Peptidyl-tRNA hydrolase II domain superfamily	SUPERFAMILY	SSF102462	Peptidyl-tRNA hydrolase II	coord: 65..84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27474	Csa2G437060	Cucumber (Chinese Long) v2	carcuB0574
Carg27474	MELO3C021894	Melon (DHL92) v3.5.1	carmeB0550
Carg27474	ClCG09G016880	Watermelon (Charleston Gray)	carwcgB0529
Carg27474	CSPI02G27710	Wild cucumber (PI 183967)	carcpiB0580
Carg27474	CmaCh20G009260	Cucurbita maxima (Rimu)	carcmaB0760
Carg27474	CmoCh20G009320	Cucurbita moschata (Rifu)	carcmoB0738
Carg27474	Lsi10G002540	Bottle gourd (USVL1VR-Ls)	carlsiB494
Carg27474	Cp4.1LG16g01790	Cucurbita pepo (Zucchini)	carcpeB0770
Carg27474	CsGy2G027150	Cucumber (Gy14) v2	carcgybB0550
Carg27474	MELO3C021894.2	Melon (DHL92) v3.6.1	carmedB0556
Carg27474	CsaV3_2G036370	Cucumber (Chinese Long) v3	carcucB0581
Carg27474	Cla97C09G178440	Watermelon (97103) v2	carwmbB0570
Carg27474	Bhi10G001306	Wax gourd	carwgoB0654

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None