Carg06923-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTCCGGCGAACCCAGGGAAGAAAGACAAGCTGGGATCAAAGCCTTTCTCGGATTTCACTCAGATTGACCTAATGTTCCGAGATGGCATTGAGATCCCCCCCGCCCCTCACGAAATTCTTCGCTTTAATATTTCCTCCACTCTTTCCACCATGCATGCCCCACCCTTTGTTGACCCTTCTACCCTTCAGCCCCAGCCTGCTCGATTGGTTAAATTCCCACCACCCGAGGCTCTCAAGAGTGAGTCCACGCCTACTTTTCTTTTTTTTTTTTTGGGTTGGGGAGGGGGGGGTGTGTATTAATGGAGCTTACCAAACAAATGCATTTTCCTCACAATTACTTCAATTTTTCCCAGGAGACAAGTTCAATTGGCTGAGTGACAGCGAGTTTGCAAGACAGACACTCGCTGGTCTCAACCCCTACAGCATTCAGCTGGTCAAGGTCACTCACAACTTCACCATCAATCCATTAATCTCTCTCTTTCTATAATATGCAAAACTCGCTTAATTTTGTCCTCATACATTCAGAGTTTGCCTTTGATGAGTGAGCTGAACCCCAAGGATTATGGACCTCAAGAATCAGGATTCACCACCGAATTGGTTCAAAAATTAATCGGATGCTCCATCACTGTTGAAGAGGTAAAATTGATTAAACCCAACGTGCTATAAGTTACTAAATTAGAGAAGAAAAAAAATAAAAAAATAAAAAATAAAAAAAGAGAATTTTGTGAGTTTATGCAGGCATTAGCACACAAGAAATTGTTCGTACTGGATTACCATGACACTTTAATGCAATATGTAACCAAAGTAAGAAGCATTAAGCGGACGACACTGTATGGATCAAGGACATTGTTCTTCCTAAACTCAGATGACACTTTGACGCCGTTGGGTATTGAGCTAACTCGGCCGCCAATGGATGGGAAGCCCCAATGGAAACAAGTTTTTTCCCCAAGCACTCATGCCACTGATGCCTGGCTATGGAGGCTCGCTAAAGCCCACGTTCTTGCTCATGATTCTTGCGTTCACCAACTCGTTATTCATTGGTACAGGGCTAA ATGTTTCCGGCGAACCCAGGGAAGAAAGACAAGCTGGGATCAAAGCCTTTCTCGGATTTCACTCAGATTGACCTAATGTTCCGAGATGGCATTGAGATCCCCCCCGCCCCTCACGAAATTCTTCGCTTTAATATTTCCTCCACTCTTTCCACCATGCATGCCCCACCCTTTGTTGACCCTTCTACCCTTCAGCCCCAGCCTGCTCGATTGGTTAAATTCCCACCACCCGAGGCTCTCAAGAGAGACAAGTTCAATTGGCTGAGTGACAGCGAGTTTGCAAGACAGACACTCGCTGGTCTCAACCCCTACAGCATTCAGCTGGTCAAGAGTTTGCCTTTGATGAGTGAGCTGAACCCCAAGGATTATGGACCTCAAGAATCAGGATTCACCACCGAATTGGTTCAAAAATTAATCGGATGCTCCATCACTGTTGAAGAGGGCTAA ATGTTTCCGGCGAACCCAGGGAAGAAAGACAAGCTGGGATCAAAGCCTTTCTCGGATTTCACTCAGATTGACCTAATGTTCCGAGATGGCATTGAGATCCCCCCCGCCCCTCACGAAATTCTTCGCTTTAATATTTCCTCCACTCTTTCCACCATGCATGCCCCACCCTTTGTTGACCCTTCTACCCTTCAGCCCCAGCCTGCTCGATTGGTTAAATTCCCACCACCCGAGGCTCTCAAGAGAGACAAGTTCAATTGGCTGAGTGACAGCGAGTTTGCAAGACAGACACTCGCTGGTCTCAACCCCTACAGCATTCAGCTGGTCAAGAGTTTGCCTTTGATGAGTGAGCTGAACCCCAAGGATTATGGACCTCAAGAATCAGGATTCACCACCGAATTGGTTCAAAAATTAATCGGATGCTCCATCACTGTTGAAGAGGGCTAA MFPANPGKKDKLGSKPFSDFTQIDLMFRDGIEIPPAPHEILRFNISSTLSTMHAPPFVDPSTLQPQPARLVKFPPPEALKRDKFNWLSDSEFARQTLAGLNPYSIQLVKSLPLMSELNPKDYGPQESGFTTELVQKLIGCSITVEEG
BLAST of Carg06923-RA vs. NCBI nr
Match: XP_022943470.1 (lipoxygenase 7, chloroplastic-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 302.4 bits (773), Expect = 8.6e-79 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Carg06923-RA vs. NCBI nr
Match: XP_022943469.1 (linoleate 13S-lipoxygenase 2-1, chloroplastic-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 302.4 bits (773), Expect = 8.6e-79 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Carg06923-RA vs. NCBI nr
Match: XP_022985897.1 (linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 301.2 bits (770), Expect = 1.9e-78 Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Carg06923-RA vs. NCBI nr
Match: XP_023513406.1 (linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 298.9 bits (764), Expect = 9.5e-78 Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0
BLAST of Carg06923-RA vs. NCBI nr
Match: KGN54123.1 (hypothetical protein Csa_4G286960 [Cucumis sativus]) HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55 Identity = 114/148 (77.03%), Postives = 124/148 (83.78%), Query Frame = 0
BLAST of Carg06923-RA vs. TAIR10
Match: AT1G17420.1 (lipoxygenase 3) HSP 1 Score: 91.3 bits (225), Expect = 5.4e-19 Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 0
BLAST of Carg06923-RA vs. TAIR10
Match: AT3G45140.1 (lipoxygenase 2) HSP 1 Score: 89.0 bits (219), Expect = 2.7e-18 Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 0
BLAST of Carg06923-RA vs. TAIR10
Match: AT1G67560.1 (PLAT/LH2 domain-containing lipoxygenase family protein) HSP 1 Score: 78.2 bits (191), Expect = 4.8e-15 Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 0
BLAST of Carg06923-RA vs. TAIR10
Match: AT1G72520.1 (PLAT/LH2 domain-containing lipoxygenase family protein) HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14 Identity = 42/139 (30.22%), Postives = 77/139 (55.40%), Query Frame = 0
BLAST of Carg06923-RA vs. TAIR10
Match: AT1G55020.1 (lipoxygenase 1) HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13 Identity = 44/132 (33.33%), Postives = 70/132 (53.03%), Query Frame = 0
BLAST of Carg06923-RA vs. Swiss-Prot
Match: sp|P38419|LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CM-LOX1 PE=2 SV=2) HSP 1 Score: 99.8 bits (247), Expect = 2.8e-20 Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 0
BLAST of Carg06923-RA vs. Swiss-Prot
Match: sp|Q8GSM2|LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare OX=4513 GN=LOX2.3 PE=1 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 3.6e-20 Identity = 52/133 (39.10%), Postives = 79/133 (59.40%), Query Frame = 0
BLAST of Carg06923-RA vs. Swiss-Prot
Match: sp|O24370|LOX21_SOLTU (Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum OX=4113 GN=LOX2.1 PE=1 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.0e-19 Identity = 55/131 (41.98%), Postives = 75/131 (57.25%), Query Frame = 0
BLAST of Carg06923-RA vs. Swiss-Prot
Match: sp|Q84YK8|LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CM-LOX2 PE=2 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19 Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = 0
BLAST of Carg06923-RA vs. Swiss-Prot
Match: sp|Q9LNR3|LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LOX3 PE=2 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 9.8e-18 Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 0
BLAST of Carg06923-RA vs. TrEMBL
Match: tr|A0A0A0KX68|A0A0A0KX68_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G286960 PE=4 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 6.7e-56 Identity = 114/148 (77.03%), Postives = 124/148 (83.78%), Query Frame = 0
BLAST of Carg06923-RA vs. TrEMBL
Match: tr|A0A1S4DXN5|A0A1S4DXN5_CUCME (Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC107991008 PE=3 SV=1) HSP 1 Score: 220.7 bits (561), Expect = 2.2e-54 Identity = 108/146 (73.97%), Postives = 123/146 (84.25%), Query Frame = 0
BLAST of Carg06923-RA vs. TrEMBL
Match: tr|A0A0A0L1U9|A0A0A0L1U9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G286940 PE=4 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 8.3e-38 Identity = 82/112 (73.21%), Postives = 92/112 (82.14%), Query Frame = 0
BLAST of Carg06923-RA vs. TrEMBL
Match: tr|A0A1S3BNQ1|A0A1S3BNQ1_CUCME (Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103491544 PE=3 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36 Identity = 78/146 (53.42%), Postives = 105/146 (71.92%), Query Frame = 0
BLAST of Carg06923-RA vs. TrEMBL
Match: tr|A0A0A0L1V5|A0A0A0L1V5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287530 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36 Identity = 80/146 (54.79%), Postives = 105/146 (71.92%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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