Carg13970-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13970-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	inactive protein RESTRICTED TEV MOVEMENT 2-like
Location	Cucurbita_argyrosperma_scaffold_097 : 7671 .. 9818 (-)
Sequence length	558

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAACGAGACATTAGATCCGTTAACCAAAGGTTCGTGCCTTCATTTTCAACATGTGATCTCGTAGTTAAAAACACGTCGGCTATCACCCAGCTAAGCTCGATTTGACTCGAGAACCATTTGAATCAAAGGGAATCTTTGTAGTTATAAATATACAATTTAAAGGAAGATTCAAAGCTTAATGGCGAATTAATAAACAAAAAGATGCCCATCTTAGGTTATTATATTCCATTGAATGTTACTTGAGATTAGTAGAAAACAAGGCATATACACCAAGGAAGCTAAAGAACCTTGAGCTTCCCCCACACCAAGAAATATGTTGAAGCCCTTTTTGATGCTCATAAGCAACCTCTCGTTGCGTCCTCCTCTCTCTATAAAGCCAAAACTAAACCCTGACCCATGTCTTCCAGTTCCATTCAGCTAACGTATTGATCCAATTTGAAACCAAATGGCTCCCAAAAACCAGCCCACTTATGAAGATTTTGAACCTCTGGTTGAAGCTTCTGAAGAAGATGGCTGCAGCATTCTCTCCCTACACGTTCCTGGTTTGTCCTTTTCTTTAACGATAACGGGTTGTCTCTTATGGAGAAACTATGGCTGCTCGGTTTGATAGCTATTTGATTCTTAAGTTAGGGTTTGAGAATGTAGCTCGTGATCTGCGAGATCTCATTTTGGTTGGAGAAGGGAATGAAACATTCTTTATAAAGATGTGTAAACCTCTCCCTAACAGACACGTTTTAAAACCACGAGGCTGATGGTCATATTGTCTATTTTGTCCCGTTAAGTATCGTCATCGGTCTTATGATTTTAAAACGTGTGTCTGTTTCGGAGAGGTCTTCACACCTTTATAAATAATACATCGTTCCCCTCTCCAACCGATGTGGAATTTTTGTAATGGTATAGAAATCTCTCTCTATCAAATGCGTTTTAAAATCGTGAGGCTGACTAGTGATATTGTCCGCTTTGGCCCGTTACGTATCGCCGTCAGCCTCACAGTTTTAAAACGTGTTTGCTAATGAGAGGTTTCTACACCCTTATAAAGAATATATCGTTCCCATCTCCAACCGATGTGAGATCTTTAGAAAGGTGTAGAAACTTTTCCCTAATAGACGCGTTTTAAAACCGGTGAAGCCCACAGCAGTGTTGTTTGCTTTGGCCCATTACGTATCGCCATCAGCCTCATGGTTTTAAAAATGTTTTAAAAACGGTGAGGGCGACAGTGGTATTGTCCGCTTTGGCCTGTTACGTATCGTCATCAACCTCATGATTTTAAAACGTGTTTGCTAACGAGAGGTTTCCACACCCTTATAAGGAATACATCGTTCCCCTATCCAACTGACGTGGAATCTTTATAAGGGTGTAGAAACCTCTCCCTAGCGGACGCATTTTAAAATCGTGAGGCTGACGGTGATATTGTCAGCTTTGGCTCGTTACATATAGTCGTTAACCTCACGGTTTTAAAACGCGTATGTTAGGTAGGAGTTTCCACACCCTTAACGTTTTGTTTCTCTTTTCAACCAACGTGGGATCTGACATTAGCATTTTCAAGATATAAATTGAGTTTTATAAACTAAAGCAGACAATATCCAGTAGTAGCTTAGTTCTCTTATTCTGCACTACAGGTTTTCGCAGAGAGCAAATTCGGGTTCAAGTATCCTCCACAAGAAAGCTGAGGATCTCCGGCGAGCGGCCTTACCGGAACAAGACATGGCAGCGTTTCCACAAGGAGTTTGAAATCCCATCAAACTGCACCACCTCTAAAATTACAGCCAAGTACAAGGACGGCATCCTTCATGTCCGTCAGCCATTGCAGCCACAGGACGTGTCGGAGCCGCCACGCACGGCAGCTCCCAACCCACCGCCACCGCAGCAGCAGCAGCAAAATGGCCAGCAACAAGCTGAGGAACCAGAGAAGAAGAGCAGCCCAGCCGCCAATGGAAAAGCGGAAGCCAAAAGCAATAGAGAAAGAGAAGGAAGTACTTGCAACGGTGACAAGATCAGTGGTCGAGCTGGGCGGCTGAAGGAGGTGGCTCCTGGATTGTTGGGGAAGTTTATTTTGCCTGTTTTGGCGGCTGTGTTGCTTTTCCTGTTGGCTAAGAGGTTGGATCAGAACATGGCTGGTGGAGCCGGAGAATCTCGGCTGTGA

mRNA sequence

ATGTCAAACGAGACATTAGATCCGTTAACCAAAGGTTTTCGCAGAGAGCAAATTCGGGTTCAAGTATCCTCCACAAGAAAGCTGAGGATCTCCGGCGAGCGGCCTTACCGGAACAAGACATGGCAGCGTTTCCACAAGGAGTTTGAAATCCCATCAAACTGCACCACCTCTAAAATTACAGCCAAGTACAAGGACGGCATCCTTCATGTCCGTCAGCCATTGCAGCCACAGGACGTGTCGGAGCCGCCACGCACGGCAGCTCCCAACCCACCGCCACCGCAGCAGCAGCAGCAAAATGGCCAGCAACAAGCTGAGGAACCAGAGAAGAAGAGCAGCCCAGCCGCCAATGGAAAAGCGGAAGCCAAAAGCAATAGAGAAAGAGAAGGAAGTACTTGCAACGGTGACAAGATCAGTGGTCGAGCTGGGCGGCTGAAGGAGGTGGCTCCTGGATTGTTGGGGAAGTTTATTTTGCCTGTTTTGGCGGCTGTGTTGCTTTTCCTGTTGGCTAAGAGGTTGGATCAGAACATGGCTGGTGGAGCCGGAGAATCTCGGCTGTGA

Coding sequence (CDS)

ATGTCAAACGAGACATTAGATCCGTTAACCAAAGGTTTTCGCAGAGAGCAAATTCGGGTTCAAGTATCCTCCACAAGAAAGCTGAGGATCTCCGGCGAGCGGCCTTACCGGAACAAGACATGGCAGCGTTTCCACAAGGAGTTTGAAATCCCATCAAACTGCACCACCTCTAAAATTACAGCCAAGTACAAGGACGGCATCCTTCATGTCCGTCAGCCATTGCAGCCACAGGACGTGTCGGAGCCGCCACGCACGGCAGCTCCCAACCCACCGCCACCGCAGCAGCAGCAGCAAAATGGCCAGCAACAAGCTGAGGAACCAGAGAAGAAGAGCAGCCCAGCCGCCAATGGAAAAGCGGAAGCCAAAAGCAATAGAGAAAGAGAAGGAAGTACTTGCAACGGTGACAAGATCAGTGGTCGAGCTGGGCGGCTGAAGGAGGTGGCTCCTGGATTGTTGGGGAAGTTTATTTTGCCTGTTTTGGCGGCTGTGTTGCTTTTCCTGTTGGCTAAGAGGTTGGATCAGAACATGGCTGGTGGAGCCGGAGAATCTCGGCTGTGA

Protein sequence

MSNETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVRQPLQPQDVSEPPRTAAPNPPPPQQQQQNGQQQAEEPEKKSSPAANGKAEAKSNREREGSTCNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL

Homology

[Close]

BLAST of Carg13970-RA vs. NCBI nr
Match: XP_022958345.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata])

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GFRREQIRVQVSSTRKLRISGERPY+NKTWQRFHKEFEIPSNCTTS ITAKYKDGILHVR
Sbjct: 33  GFRREQIRVQVSSTRKLRISGERPYQNKTWQRFHKEFEIPSNCTTSNITAKYKDGILHVR 92

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST
Sbjct: 93  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 152

Query: 132 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 186
           CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL
Sbjct: 153 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 206

[Close]

BLAST of Carg13970-RA vs. NCBI nr
Match: XP_023534144.1 (uncharacterized protein LOC111795792 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 2.8e-63
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GFRREQIRVQVSSTRKLRISGERPYRNKT QRFHKEFEIPSNCTTS ITAKYKDGILHVR
Sbjct: 33  GFRREQIRVQVSSTRKLRISGERPYRNKTLQRFHKEFEIPSNCTTSNITAKYKDGILHVR 92

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSN EREGS+
Sbjct: 93  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNTEREGSS 152

Query: 132 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 186
           CNGDKI+ RAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL
Sbjct: 153 CNGDKITSRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 206

[Close]

BLAST of Carg13970-RA vs. NCBI nr
Match: XP_022995333.1 (uncharacterized protein LOC111490909 [Cucurbita maxima])

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 164/174 (94.25%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GFR+EQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR
Sbjct: 33  GFRKEQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 92

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NGKA+AKS+REREGS+
Sbjct: 93  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGKAKAKSSREREGSS 152

Query: 132 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 186
           CNGDKI+ RAGRLKEVAPGLLGKF+L VLAAVLLFLLAKRLDQNMAGGA ESRL
Sbjct: 153 CNGDKITSRAGRLKEVAPGLLGKFVLTVLAAVLLFLLAKRLDQNMAGGA-ESRL 205

[Close]

BLAST of Carg13970-RA vs. NCBI nr
Match: XP_022153773.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-28
Identity = 107/178 (60.11%), Postives = 124/178 (69.66%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GF +EQIRVQVSST KLRISGERPYRNK WQRFHKEF+IP NC TS ITAKYK GILHVR
Sbjct: 73  GFSKEQIRVQVSSTGKLRISGERPYRNKAWQRFHKEFQIPPNCDTSSITAKYKGGILHVR 132

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPL+ +   +       XXXXXXXXXXXXXXXXXXXXXXXX   +G AEA+ ++E   + 
Sbjct: 133 QPLREESKQQ---AAEAXXXXXXXXXXXXXXXXXXXXXXXXVAADGTAEARISKETTNAL 192

Query: 132 CNG---------------DKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQ 175
            +                DKI  +AGRLKE+  G + K ILP+L A LLFL AKRL++
Sbjct: 193 EDNADKARKDAQEHPNIRDKIMSQAGRLKEMITGNMVKLILPILLAALLFLYAKRLNR 247

[Close]

BLAST of Carg13970-RA vs. NCBI nr
Match: XP_004149651.1 (PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus] >KGN54031.1 hypothetical protein Csa_4G269140 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 5.3e-17
Identity = 72/172 (41.86%), Postives = 87/172 (50.58%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKT---WQRFHKEFEIPSNCTTSKITAKYKDGIL 71
           GF +EQI+VQVSS RKLRISGER  +N      QRF+KEFEIPSNC T+ ITAKYK GIL
Sbjct: 35  GFNKEQIKVQVSSKRKLRISGERALKNNNKHIMQRFNKEFEIPSNCNTTNITAKYKSGIL 94

Query: 72  HVRQPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNRERE 131
           HVRQPLQ QD S+                                       A ++ E  
Sbjct: 95  HVRQPLQ-QDQSDSKQQPHHNPILEDQKVKQTNL------------------ASNHNEPH 154

Query: 132 GSTCNGDK--ISGRAGRLKEVAPGLLGKFILPVL--AAVLLFLLAKRLDQNM 177
             T   D+   +    RLKE  P +  K +LP+L  +A LL   A+RL   M
Sbjct: 155 SDTPKDDRKFTTSTGQRLKETIPCVFLKLVLPILLPSAFLLLWYARRLSPIM 187

[Close]

BLAST of Carg13970-RA vs. TAIR10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 4  ETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKY 63
          E L     GFR+EQ++VQV++TRKLR+ G+RP     W RF KEF IP N     ++AK+
Sbjct: 30 EALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWIRFRKEFPIPPNIDVDSVSAKF 89

Query: 64 KDGILHVRQP 74
          +   L VR P
Sbjct: 90 EGANLVVRLP 99

[Close]

BLAST of Carg13970-RA vs. TAIR10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-11
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 12 GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
          GF++EQ++V V++TRKLR++GERP     W RFH+E  +P       ++A +KD  L++R
Sbjct: 34 GFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFHQEIPVPLTVDIDSVSAMFKDNKLYIR 93

Query: 72 QP 74
           P
Sbjct: 94 HP 95

[Close]

BLAST of Carg13970-RA vs. TAIR10
Match: AT5G04890.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-09
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970-RA vs. TAIR10
Match: AT1G53540.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 9.6e-05
Identity = 26/81 (32.10%), Postives = 40/81 (49.38%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGER----PYRNKTWQR-------FHKEFEIPSNCTTSKIT 71
           G R+E+++V+V     L+ISGER      +N  W R       F + F +P N    +I 
Sbjct: 69  GLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIK 128

Query: 72  AKYKDGILHVRQPLQPQDVSE 82
           A  ++G+L V  P  P+   E
Sbjct: 129 ASMENGVLSVTVPKVPEKKPE 149

[Close]

BLAST of Carg13970-RA vs. TAIR10
Match: AT3G46230.1 (heat shock protein 17.4)

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 23/73 (31.51%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNK----TWQR-------FHKEFEIPSNCTTSKIT 71
           G ++E+++V+V     L+ISGER   N+    TW R       F + F +P N    ++ 
Sbjct: 68  GLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVK 127

Query: 72  AKYKDGILHVRQP 74
           A  ++G+L V  P
Sbjct: 128 ASMENGVLSVTVP 140

[Close]

BLAST of Carg13970-RA vs. Swiss-Prot
Match: sp|D5K211|RTM2A_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970-RA vs. Swiss-Prot
Match: sp|D9UBX6|RTM2B_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970-RA vs. Swiss-Prot
Match: sp|D9UBX4|RTM2C_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970-RA vs. Swiss-Prot
Match: sp|Q9M670|RTM2_ARATH (Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970-RA vs. Swiss-Prot
Match: sp|D9UC01|RTM2D_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.2e-08
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K  +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEVFTVPQNCLVDKIHGSFKKNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970-RA vs. TrEMBL
Match: tr|A0A0A0L1N9|A0A0A0L1N9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269140 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 72/172 (41.86%), Postives = 87/172 (50.58%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKT---WQRFHKEFEIPSNCTTSKITAKYKDGIL 71
           GF +EQI+VQVSS RKLRISGER  +N      QRF+KEFEIPSNC T+ ITAKYK GIL
Sbjct: 35  GFNKEQIKVQVSSKRKLRISGERALKNNNKHIMQRFNKEFEIPSNCNTTNITAKYKSGIL 94

Query: 72  HVRQPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNRERE 131
           HVRQPLQ QD S+                                       A ++ E  
Sbjct: 95  HVRQPLQ-QDQSDSKQQPHHNPILEDQKVKQTNL------------------ASNHNEPH 154

Query: 132 GSTCNGDK--ISGRAGRLKEVAPGLLGKFILPVL--AAVLLFLLAKRLDQNM 177
             T   D+   +    RLKE  P +  K +LP+L  +A LL   A+RL   M
Sbjct: 155 SDTPKDDRKFTTSTGQRLKETIPCVFLKLVLPILLPSAFLLLWYARRLSPIM 187

[Close]

BLAST of Carg13970-RA vs. TrEMBL
Match: tr|A0A1S3BMF5|A0A1S3BMF5_CUCME (uncharacterized protein LOC103491622 OS=Cucumis melo OX=3656 GN=LOC103491622 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 71/171 (41.52%), Postives = 87/171 (50.88%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNK---TWQRFHKEFEIPSNCTTSKITAKYKDGIL 71
           GF +EQI+VQVSS RKLRISGER  ++    T QRF+KEFEIPSNC T+ ITAKYK GIL
Sbjct: 35  GFEKEQIKVQVSSKRKLRISGERALKSNNKHTMQRFYKEFEIPSNCNTANITAKYKSGIL 94

Query: 72  HVRQPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNRERE 131
           HVRQPLQ QD S                                        +  N    
Sbjct: 95  HVRQPLQ-QDQSN-----------------SKQQPHHNPILEDQEIKQTNLASNHNEPHS 154

Query: 132 GSTCNGDKISGRAG-RLKEVAPGLLGKFILPVL--AAVLLFLLAKRLDQNM 177
            +  N  K++   G RLKE  P +  K +LP+L  +A+LL   A+ L   M
Sbjct: 155 DTPKNNGKLTISTGQRLKETIPCVFLKLVLPILLPSALLLLWYARSLSPIM 187

[Close]

BLAST of Carg13970-RA vs. TrEMBL
Match: tr|A0A022S479|A0A022S479_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a012257mg PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 4  ETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKY 63
          +TL     GF +EQ+RVQ++ TR L+ISG RP  +  W  FHK+F++  NC T+KITAK+
Sbjct: 29 DTLLIYLPGFTKEQLRVQLTRTRILKISGARPLGDNKWSSFHKDFDVSENCDTNKITAKF 88

Query: 64 KDGILHVRQP 74
          ++GIL+VRQP
Sbjct: 89 EEGILYVRQP 98

[Close]

BLAST of Carg13970-RA vs. TrEMBL
Match: tr|A0A1S3YLL2|A0A1S3YLL2_TOBAC (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107777447 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 3   NETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAK 62
           ++TL     GF++EQ+RVQ++ T  L+ISG+RP     WQRF K+F +  NC  SKI+AK
Sbjct: 30  SDTLHLNIPGFKKEQVRVQLTKTGILKISGQRPIGQNKWQRFQKDFPVAENCDKSKISAK 89

Query: 63  YKDGILHVRQP 74
           +++GILHV+QP
Sbjct: 90  FENGILHVKQP 100

[Close]

BLAST of Carg13970-RA vs. TrEMBL
Match: tr|A0A1J6HXL8|A0A1J6HXL8_NICAT (Protein restricted tev movement 2 OS=Nicotiana attenuata OX=49451 GN=RTM2_3 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 4   ETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKY 63
           +TL     GF++EQ+RVQ++ T  L+ISG+RP     WQRFHK+F    NC  SKI+AK+
Sbjct: 31  DTLQLNLPGFKKEQLRVQLTRTGILKISGQRPIGQNKWQRFHKDFPAVENCDKSKISAKF 90

Query: 64  KDGILHVRQP 74
           ++G+LHV+QP
Sbjct: 91  ENGVLHVKQP 100

The following BLAST results are available for this feature:

BLAST of Carg13970-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958345.1	1.6e-66	98.85	inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata]	[more]
XP_023534144.1	2.8e-63	96.55	uncharacterized protein LOC111795792 [Cucurbita pepo subsp. pepo]	[more]
XP_022995333.1	1.6e-61	94.25	uncharacterized protein LOC111490909 [Cucurbita maxima]	[more]
XP_022153773.1	3.0e-28	60.11	inactive protein RESTRICTED TEV MOVEMENT 2-like [Momordica charantia]	[more]
XP_004149651.1	5.3e-17	41.86	PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus] >KGN54031.1 hy...	[more]

BLAST of Carg13970-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27140.1	1.1e-11	47.14	HSP20-like chaperones superfamily protein	[more]
AT5G20970.1	3.1e-11	43.55	HSP20-like chaperones superfamily protein	[more]
AT5G04890.1	1.7e-09	39.68	HSP20-like chaperones superfamily protein	[more]
AT1G53540.1	9.6e-05	32.10	HSP20-like chaperones superfamily protein	[more]
AT3G46230.1	2.1e-04	31.51	heat shock protein 17.4	[more]

BLAST of Carg13970-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|D5K211\|RTM2A_ARATH	3.0e-08	39.68	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]
sp\|D9UBX6\|RTM2B_ARATH	3.0e-08	39.68	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]
sp\|D9UBX4\|RTM2C_ARATH	3.0e-08	39.68	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]
sp\|Q9M670\|RTM2_ARATH	3.0e-08	39.68	Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 S...	[more]
sp\|D9UC01\|RTM2D_ARATH	5.2e-08	39.68	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]

BLAST of Carg13970-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1N9\|A0A0A0L1N9_CUCSA	3.5e-17	41.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269140 PE=3 SV=1	[more]
tr\|A0A1S3BMF5\|A0A1S3BMF5_CUCME	1.0e-16	41.52	uncharacterized protein LOC103491622 OS=Cucumis melo OX=3656 GN=LOC103491622 PE=...	[more]
tr\|A0A022S479\|A0A022S479_ERYGU	1.5e-12	52.86	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a012257mg PE...	[more]
tr\|A0A1S3YLL2\|A0A1S3YLL2_TOBAC	3.4e-12	50.70	inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Nicotiana tabacum OX=4097 GN=...	[more]
tr\|A0A1J6HXL8\|A0A1J6HXL8_NICAT	3.4e-12	51.43	Protein restricted tev movement 2 OS=Nicotiana attenuata OX=49451 GN=RTM2_3 PE=3...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002068	A-crystallin/Hsp20_dom
IPR008978	HSP20-like_chaperone

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13970	Carg13970	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13970-RA.CDS.2	Carg13970-RA.CDS.2	CDS
Carg13970-RA.CDS.1	Carg13970-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13970-RA.exon.2	Carg13970-RA.exon.2	exon
Carg13970-RA.exon.1	Carg13970-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13970-RA	Carg13970-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 9..112 e-value: 5.2E-14 score: 53.9
IPR008978	HSP20-like chaperone	SUPERFAMILY	SSF49764	HSP20-like chaperones	coord: 12..75
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 11..80 e-value: 2.2E-8 score: 34.1
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 1..89 score: 15.868
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..138
None	No IPR available	PANTHER	PTHR43670:SF17	SUBFAMILY NOT NAMED	coord: 6..127
None	No IPR available	PANTHER	PTHR43670	FAMILY NOT NAMED	coord: 6..127
None	No IPR available	CDD	cd06464	ACD_sHsps-like	coord: 12..71 e-value: 1.0713E-13 score: 62.1864