Carg13970 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13970
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	inactive protein RESTRICTED TEV MOVEMENT 2-like
Location	Cucurbita_argyrosperma_scaffold_097 : 7671 .. 9818 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAACGAGACATTAGATCCGTTAACCAAAGGTTCGTGCCTTCATTTTCAACATGTGATCTCGTAGTTAAAAACACGTCGGCTATCACCCAGCTAAGCTCGATTTGACTCGAGAACCATTTGAATCAAAGGGAATCTTTGTAGTTATAAATATACAATTTAAAGGAAGATTCAAAGCTTAATGGCGAATTAATAAACAAAAAGATGCCCATCTTAGGTTATTATATTCCATTGAATGTTACTTGAGATTAGTAGAAAACAAGGCATATACACCAAGGAAGCTAAAGAACCTTGAGCTTCCCCCACACCAAGAAATATGTTGAAGCCCTTTTTGATGCTCATAAGCAACCTCTCGTTGCGTCCTCCTCTCTCTATAAAGCCAAAACTAAACCCTGACCCATGTCTTCCAGTTCCATTCAGCTAACGTATTGATCCAATTTGAAACCAAATGGCTCCCAAAAACCAGCCCACTTATGAAGATTTTGAACCTCTGGTTGAAGCTTCTGAAGAAGATGGCTGCAGCATTCTCTCCCTACACGTTCCTGGTTTGTCCTTTTCTTTAACGATAACGGGTTGTCTCTTATGGAGAAACTATGGCTGCTCGGTTTGATAGCTATTTGATTCTTAAGTTAGGGTTTGAGAATGTAGCTCGTGATCTGCGAGATCTCATTTTGGTTGGAGAAGGGAATGAAACATTCTTTATAAAGATGTGTAAACCTCTCCCTAACAGACACGTTTTAAAACCACGAGGCTGATGGTCATATTGTCTATTTTGTCCCGTTAAGTATCGTCATCGGTCTTATGATTTTAAAACGTGTGTCTGTTTCGGAGAGGTCTTCACACCTTTATAAATAATACATCGTTCCCCTCTCCAACCGATGTGGAATTTTTGTAATGGTATAGAAATCTCTCTCTATCAAATGCGTTTTAAAATCGTGAGGCTGACTAGTGATATTGTCCGCTTTGGCCCGTTACGTATCGCCGTCAGCCTCACAGTTTTAAAACGTGTTTGCTAATGAGAGGTTTCTACACCCTTATAAAGAATATATCGTTCCCATCTCCAACCGATGTGAGATCTTTAGAAAGGTGTAGAAACTTTTCCCTAATAGACGCGTTTTAAAACCGGTGAAGCCCACAGCAGTGTTGTTTGCTTTGGCCCATTACGTATCGCCATCAGCCTCATGGTTTTAAAAATGTTTTAAAAACGGTGAGGGCGACAGTGGTATTGTCCGCTTTGGCCTGTTACGTATCGTCATCAACCTCATGATTTTAAAACGTGTTTGCTAACGAGAGGTTTCCACACCCTTATAAGGAATACATCGTTCCCCTATCCAACTGACGTGGAATCTTTATAAGGGTGTAGAAACCTCTCCCTAGCGGACGCATTTTAAAATCGTGAGGCTGACGGTGATATTGTCAGCTTTGGCTCGTTACATATAGTCGTTAACCTCACGGTTTTAAAACGCGTATGTTAGGTAGGAGTTTCCACACCCTTAACGTTTTGTTTCTCTTTTCAACCAACGTGGGATCTGACATTAGCATTTTCAAGATATAAATTGAGTTTTATAAACTAAAGCAGACAATATCCAGTAGTAGCTTAGTTCTCTTATTCTGCACTACAGGTTTTCGCAGAGAGCAAATTCGGGTTCAAGTATCCTCCACAAGAAAGCTGAGGATCTCCGGCGAGCGGCCTTACCGGAACAAGACATGGCAGCGTTTCCACAAGGAGTTTGAAATCCCATCAAACTGCACCACCTCTAAAATTACAGCCAAGTACAAGGACGGCATCCTTCATGTCCGTCAGCCATTGCAGCCACAGGACGTGTCGGAGCCGCCACGCACGGCAGCTCCCAACCCACCGCCACCGCAGCAGCAGCAGCAAAATGGCCAGCAACAAGCTGAGGAACCAGAGAAGAAGAGCAGCCCAGCCGCCAATGGAAAAGCGGAAGCCAAAAGCAATAGAGAAAGAGAAGGAAGTACTTGCAACGGTGACAAGATCAGTGGTCGAGCTGGGCGGCTGAAGGAGGTGGCTCCTGGATTGTTGGGGAAGTTTATTTTGCCTGTTTTGGCGGCTGTGTTGCTTTTCCTGTTGGCTAAGAGGTTGGATCAGAACATGGCTGGTGGAGCCGGAGAATCTCGGCTGTGA

mRNA sequence

ATGTCAAACGAGACATTAGATCCGTTAACCAAAGGTTTTCGCAGAGAGCAAATTCGGGTTCAAGTATCCTCCACAAGAAAGCTGAGGATCTCCGGCGAGCGGCCTTACCGGAACAAGACATGGCAGCGTTTCCACAAGGAGTTTGAAATCCCATCAAACTGCACCACCTCTAAAATTACAGCCAAGTACAAGGACGGCATCCTTCATGTCCGTCAGCCATTGCAGCCACAGGACGTGTCGGAGCCGCCACGCACGGCAGCTCCCAACCCACCGCCACCGCAGCAGCAGCAGCAAAATGGCCAGCAACAAGCTGAGGAACCAGAGAAGAAGAGCAGCCCAGCCGCCAATGGAAAAGCGGAAGCCAAAAGCAATAGAGAAAGAGAAGGAAGTACTTGCAACGGTGACAAGATCAGTGGTCGAGCTGGGCGGCTGAAGGAGGTGGCTCCTGGATTGTTGGGGAAGTTTATTTTGCCTGTTTTGGCGGCTGTGTTGCTTTTCCTGTTGGCTAAGAGGTTGGATCAGAACATGGCTGGTGGAGCCGGAGAATCTCGGCTGTGA

Coding sequence (CDS)

ATGTCAAACGAGACATTAGATCCGTTAACCAAAGGTTTTCGCAGAGAGCAAATTCGGGTTCAAGTATCCTCCACAAGAAAGCTGAGGATCTCCGGCGAGCGGCCTTACCGGAACAAGACATGGCAGCGTTTCCACAAGGAGTTTGAAATCCCATCAAACTGCACCACCTCTAAAATTACAGCCAAGTACAAGGACGGCATCCTTCATGTCCGTCAGCCATTGCAGCCACAGGACGTGTCGGAGCCGCCACGCACGGCAGCTCCCAACCCACCGCCACCGCAGCAGCAGCAGCAAAATGGCCAGCAACAAGCTGAGGAACCAGAGAAGAAGAGCAGCCCAGCCGCCAATGGAAAAGCGGAAGCCAAAAGCAATAGAGAAAGAGAAGGAAGTACTTGCAACGGTGACAAGATCAGTGGTCGAGCTGGGCGGCTGAAGGAGGTGGCTCCTGGATTGTTGGGGAAGTTTATTTTGCCTGTTTTGGCGGCTGTGTTGCTTTTCCTGTTGGCTAAGAGGTTGGATCAGAACATGGCTGGTGGAGCCGGAGAATCTCGGCTGTGA

Protein sequence

MSNETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVRQPLQPQDVSEPPRTAAPNPPPPQQQQQNGQQQAEEPEKKSSPAANGKAEAKSNREREGSTCNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL

Homology

[Close]

BLAST of Carg13970 vs. NCBI nr
Match: XP_022958345.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata])

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GFRREQIRVQVSSTRKLRISGERPY+NKTWQRFHKEFEIPSNCTTS ITAKYKDGILHVR
Sbjct: 33  GFRREQIRVQVSSTRKLRISGERPYQNKTWQRFHKEFEIPSNCTTSNITAKYKDGILHVR 92

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST
Sbjct: 93  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 152

Query: 132 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 186
           CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL
Sbjct: 153 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 206

[Close]

BLAST of Carg13970 vs. NCBI nr
Match: XP_023534144.1 (uncharacterized protein LOC111795792 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 2.8e-63
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GFRREQIRVQVSSTRKLRISGERPYRNKT QRFHKEFEIPSNCTTS ITAKYKDGILHVR
Sbjct: 33  GFRREQIRVQVSSTRKLRISGERPYRNKTLQRFHKEFEIPSNCTTSNITAKYKDGILHVR 92

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSN EREGS+
Sbjct: 93  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNTEREGSS 152

Query: 132 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 186
           CNGDKI+ RAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL
Sbjct: 153 CNGDKITSRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 206

[Close]

BLAST of Carg13970 vs. NCBI nr
Match: XP_022995333.1 (uncharacterized protein LOC111490909 [Cucurbita maxima])

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 164/174 (94.25%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GFR+EQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR
Sbjct: 33  GFRKEQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 92

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NGKA+AKS+REREGS+
Sbjct: 93  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGKAKAKSSREREGSS 152

Query: 132 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 186
           CNGDKI+ RAGRLKEVAPGLLGKF+L VLAAVLLFLLAKRLDQNMAGGA ESRL
Sbjct: 153 CNGDKITSRAGRLKEVAPGLLGKFVLTVLAAVLLFLLAKRLDQNMAGGA-ESRL 205

[Close]

BLAST of Carg13970 vs. NCBI nr
Match: XP_022153773.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-28
Identity = 107/178 (60.11%), Postives = 124/178 (69.66%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GF +EQIRVQVSST KLRISGERPYRNK WQRFHKEF+IP NC TS ITAKYK GILHVR
Sbjct: 73  GFSKEQIRVQVSSTGKLRISGERPYRNKAWQRFHKEFQIPPNCDTSSITAKYKGGILHVR 132

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPL+ +   +       XXXXXXXXXXXXXXXXXXXXXXXX   +G AEA+ ++E   + 
Sbjct: 133 QPLREESKQQ---AAEAXXXXXXXXXXXXXXXXXXXXXXXXVAADGTAEARISKETTNAL 192

Query: 132 CNG---------------DKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQ 175
            +                DKI  +AGRLKE+  G + K ILP+L A LLFL AKRL++
Sbjct: 193 EDNADKARKDAQEHPNIRDKIMSQAGRLKEMITGNMVKLILPILLAALLFLYAKRLNR 247

[Close]

BLAST of Carg13970 vs. NCBI nr
Match: XP_004149651.1 (PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus] >KGN54031.1 hypothetical protein Csa_4G269140 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 5.3e-17
Identity = 72/172 (41.86%), Postives = 87/172 (50.58%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKT---WQRFHKEFEIPSNCTTSKITAKYKDGIL 71
           GF +EQI+VQVSS RKLRISGER  +N      QRF+KEFEIPSNC T+ ITAKYK GIL
Sbjct: 35  GFNKEQIKVQVSSKRKLRISGERALKNNNKHIMQRFNKEFEIPSNCNTTNITAKYKSGIL 94

Query: 72  HVRQPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNRERE 131
           HVRQPLQ QD S+                                       A ++ E  
Sbjct: 95  HVRQPLQ-QDQSDSKQQPHHNPILEDQKVKQTNL------------------ASNHNEPH 154

Query: 132 GSTCNGDK--ISGRAGRLKEVAPGLLGKFILPVL--AAVLLFLLAKRLDQNM 177
             T   D+   +    RLKE  P +  K +LP+L  +A LL   A+RL   M
Sbjct: 155 SDTPKDDRKFTTSTGQRLKETIPCVFLKLVLPILLPSAFLLLWYARRLSPIM 187

[Close]

BLAST of Carg13970 vs. TAIR10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 4  ETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKY 63
          E L     GFR+EQ++VQV++TRKLR+ G+RP     W RF KEF IP N     ++AK+
Sbjct: 30 EALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWIRFRKEFPIPPNIDVDSVSAKF 89

Query: 64 KDGILHVRQP 74
          +   L VR P
Sbjct: 90 EGANLVVRLP 99

[Close]

BLAST of Carg13970 vs. TAIR10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-11
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 12 GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
          GF++EQ++V V++TRKLR++GERP     W RFH+E  +P       ++A +KD  L++R
Sbjct: 34 GFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFHQEIPVPLTVDIDSVSAMFKDNKLYIR 93

Query: 72 QP 74
           P
Sbjct: 94 HP 95

[Close]

BLAST of Carg13970 vs. TAIR10
Match: AT5G04890.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-09
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970 vs. TAIR10
Match: AT1G53540.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 9.6e-05
Identity = 26/81 (32.10%), Postives = 40/81 (49.38%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGER----PYRNKTWQR-------FHKEFEIPSNCTTSKIT 71
           G R+E+++V+V     L+ISGER      +N  W R       F + F +P N    +I 
Sbjct: 69  GLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIK 128

Query: 72  AKYKDGILHVRQPLQPQDVSE 82
           A  ++G+L V  P  P+   E
Sbjct: 129 ASMENGVLSVTVPKVPEKKPE 149

[Close]

BLAST of Carg13970 vs. TAIR10
Match: AT3G46230.1 (heat shock protein 17.4)

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 23/73 (31.51%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNK----TWQR-------FHKEFEIPSNCTTSKIT 71
           G ++E+++V+V     L+ISGER   N+    TW R       F + F +P N    ++ 
Sbjct: 68  GLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVK 127

Query: 72  AKYKDGILHVRQP 74
           A  ++G+L V  P
Sbjct: 128 ASMENGVLSVTVP 140

[Close]

BLAST of Carg13970 vs. Swiss-Prot
Match: sp|D5K211|RTM2A_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970 vs. Swiss-Prot
Match: sp|D9UBX6|RTM2B_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970 vs. Swiss-Prot
Match: sp|D9UBX4|RTM2C_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970 vs. Swiss-Prot
Match: sp|Q9M670|RTM2_ARATH (Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970 vs. Swiss-Prot
Match: sp|D9UC01|RTM2D_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.2e-08
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K  +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEVFTVPQNCLVDKIHGSFKKNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

[Close]

BLAST of Carg13970 vs. TrEMBL
Match: tr|A0A0A0L1N9|A0A0A0L1N9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269140 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 72/172 (41.86%), Postives = 87/172 (50.58%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKT---WQRFHKEFEIPSNCTTSKITAKYKDGIL 71
           GF +EQI+VQVSS RKLRISGER  +N      QRF+KEFEIPSNC T+ ITAKYK GIL
Sbjct: 35  GFNKEQIKVQVSSKRKLRISGERALKNNNKHIMQRFNKEFEIPSNCNTTNITAKYKSGIL 94

Query: 72  HVRQPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNRERE 131
           HVRQPLQ QD S+                                       A ++ E  
Sbjct: 95  HVRQPLQ-QDQSDSKQQPHHNPILEDQKVKQTNL------------------ASNHNEPH 154

Query: 132 GSTCNGDK--ISGRAGRLKEVAPGLLGKFILPVL--AAVLLFLLAKRLDQNM 177
             T   D+   +    RLKE  P +  K +LP+L  +A LL   A+RL   M
Sbjct: 155 SDTPKDDRKFTTSTGQRLKETIPCVFLKLVLPILLPSAFLLLWYARRLSPIM 187

[Close]

BLAST of Carg13970 vs. TrEMBL
Match: tr|A0A1S3BMF5|A0A1S3BMF5_CUCME (uncharacterized protein LOC103491622 OS=Cucumis melo OX=3656 GN=LOC103491622 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 71/171 (41.52%), Postives = 87/171 (50.88%), Query Frame = 0


Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNK---TWQRFHKEFEIPSNCTTSKITAKYKDGIL 71
           GF +EQI+VQVSS RKLRISGER  ++    T QRF+KEFEIPSNC T+ ITAKYK GIL
Sbjct: 35  GFEKEQIKVQVSSKRKLRISGERALKSNNKHTMQRFYKEFEIPSNCNTANITAKYKSGIL 94

Query: 72  HVRQPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNRERE 131
           HVRQPLQ QD S                                        +  N    
Sbjct: 95  HVRQPLQ-QDQSN-----------------SKQQPHHNPILEDQEIKQTNLASNHNEPHS 154

Query: 132 GSTCNGDKISGRAG-RLKEVAPGLLGKFILPVL--AAVLLFLLAKRLDQNM 177
            +  N  K++   G RLKE  P +  K +LP+L  +A+LL   A+ L   M
Sbjct: 155 DTPKNNGKLTISTGQRLKETIPCVFLKLVLPILLPSALLLLWYARSLSPIM 187

[Close]

BLAST of Carg13970 vs. TrEMBL
Match: tr|A0A022S479|A0A022S479_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a012257mg PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 4  ETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKY 63
          +TL     GF +EQ+RVQ++ TR L+ISG RP  +  W  FHK+F++  NC T+KITAK+
Sbjct: 29 DTLLIYLPGFTKEQLRVQLTRTRILKISGARPLGDNKWSSFHKDFDVSENCDTNKITAKF 88

Query: 64 KDGILHVRQP 74
          ++GIL+VRQP
Sbjct: 89 EEGILYVRQP 98

[Close]

BLAST of Carg13970 vs. TrEMBL
Match: tr|A0A1S3YLL2|A0A1S3YLL2_TOBAC (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107777447 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 3   NETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAK 62
           ++TL     GF++EQ+RVQ++ T  L+ISG+RP     WQRF K+F +  NC  SKI+AK
Sbjct: 30  SDTLHLNIPGFKKEQVRVQLTKTGILKISGQRPIGQNKWQRFQKDFPVAENCDKSKISAK 89

Query: 63  YKDGILHVRQP 74
           +++GILHV+QP
Sbjct: 90  FENGILHVKQP 100

[Close]

BLAST of Carg13970 vs. TrEMBL
Match: tr|A0A1J6HXL8|A0A1J6HXL8_NICAT (Protein restricted tev movement 2 OS=Nicotiana attenuata OX=49451 GN=RTM2_3 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 4   ETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKY 63
           +TL     GF++EQ+RVQ++ T  L+ISG+RP     WQRFHK+F    NC  SKI+AK+
Sbjct: 31  DTLQLNLPGFKKEQLRVQLTRTGILKISGQRPIGQNKWQRFHKDFPAVENCDKSKISAKF 90

Query: 64  KDGILHVRQP 74
           ++G+LHV+QP
Sbjct: 91  ENGVLHVKQP 100

The following BLAST results are available for this feature:

BLAST of Carg13970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958345.1	1.6e-66	98.85	inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata]	[more]
XP_023534144.1	2.8e-63	96.55	uncharacterized protein LOC111795792 [Cucurbita pepo subsp. pepo]	[more]
XP_022995333.1	1.6e-61	94.25	uncharacterized protein LOC111490909 [Cucurbita maxima]	[more]
XP_022153773.1	3.0e-28	60.11	inactive protein RESTRICTED TEV MOVEMENT 2-like [Momordica charantia]	[more]
XP_004149651.1	5.3e-17	41.86	PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus] >KGN54031.1 hy...	[more]

BLAST of Carg13970 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27140.1	1.1e-11	47.14	HSP20-like chaperones superfamily protein	[more]
AT5G20970.1	3.1e-11	43.55	HSP20-like chaperones superfamily protein	[more]
AT5G04890.1	1.7e-09	39.68	HSP20-like chaperones superfamily protein	[more]
AT1G53540.1	9.6e-05	32.10	HSP20-like chaperones superfamily protein	[more]
AT3G46230.1	2.1e-04	31.51	heat shock protein 17.4	[more]

BLAST of Carg13970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|D5K211\|RTM2A_ARATH	3.0e-08	39.68	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]
sp\|D9UBX6\|RTM2B_ARATH	3.0e-08	39.68	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]
sp\|D9UBX4\|RTM2C_ARATH	3.0e-08	39.68	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]
sp\|Q9M670\|RTM2_ARATH	3.0e-08	39.68	Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 S...	[more]
sp\|D9UC01\|RTM2D_ARATH	5.2e-08	39.68	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]

BLAST of Carg13970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1N9\|A0A0A0L1N9_CUCSA	3.5e-17	41.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269140 PE=3 SV=1	[more]
tr\|A0A1S3BMF5\|A0A1S3BMF5_CUCME	1.0e-16	41.52	uncharacterized protein LOC103491622 OS=Cucumis melo OX=3656 GN=LOC103491622 PE=...	[more]
tr\|A0A022S479\|A0A022S479_ERYGU	1.5e-12	52.86	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a012257mg PE...	[more]
tr\|A0A1S3YLL2\|A0A1S3YLL2_TOBAC	3.4e-12	50.70	inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Nicotiana tabacum OX=4097 GN=...	[more]
tr\|A0A1J6HXL8\|A0A1J6HXL8_NICAT	3.4e-12	51.43	Protein restricted tev movement 2 OS=Nicotiana attenuata OX=49451 GN=RTM2_3 PE=3...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002068	A-crystallin/Hsp20_dom
IPR008978	HSP20-like_chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13970-RA	Carg13970-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 9..112 e-value: 5.2E-14 score: 53.9
IPR008978	HSP20-like chaperone	SUPERFAMILY	SSF49764	HSP20-like chaperones	coord: 12..75
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 11..80 e-value: 2.2E-8 score: 34.1
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 1..89 score: 15.868
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..138
None	No IPR available	PANTHER	PTHR43670:SF17	SUBFAMILY NOT NAMED	coord: 6..127
None	No IPR available	PANTHER	PTHR43670	FAMILY NOT NAMED	coord: 6..127
None	No IPR available	CDD	cd06464	ACD_sHsps-like	coord: 12..71 e-value: 1.0713E-13 score: 62.1864

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13970	Cla003135	Watermelon (97103) v1	carwmB0505
Carg13970	Csa4G269140	Cucumber (Chinese Long) v2	carcuB0535
Carg13970	MELO3C014715	Melon (DHL92) v3.5.1	carmeB0512
Carg13970	ClCG02G024310	Watermelon (Charleston Gray)	carwcgB0493
Carg13970	CSPI04G12640	Wild cucumber (PI 183967)	carcpiB0542
Carg13970	Cucsa.152830	Cucumber (Gy14) v1	carcgyB0580
Carg13970	Cp4.1LG05g05490	Cucurbita pepo (Zucchini)	carcpeB0718
Carg13970	CsGy4G011630	Cucumber (Gy14) v2	carcgybB0511
Carg13970	MELO3C014715.2	Melon (DHL92) v3.6.1	carmedB0518
Carg13970	CsaV3_4G017440	Cucumber (Chinese Long) v3	carcucB0539
Carg13970	Bhi10G000386	Wax gourd	carwgoB0618

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13970	Bottle gourd (USVL1VR-Ls)	carlsiB458
Carg13970	Watermelon (97103) v2	carwmbB0531
Carg13970	Cucurbita maxima (Rimu)	carcmaB0716
Carg13970	Cucurbita moschata (Rifu)	carcmoB0694