Carg13970-RA (mRNA) Silver-seed gourd

NameCarg13970-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptioninactive protein RESTRICTED TEV MOVEMENT 2-like
LocationCucurbita_argyrosperma_scaffold_097 : 7671 .. 9818 (-)
Sequence length558
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAACGAGACATTAGATCCGTTAACCAAAGGTTCGTGCCTTCATTTTCAACATGTGATCTCGTAGTTAAAAACACGTCGGCTATCACCCAGCTAAGCTCGATTTGACTCGAGAACCATTTGAATCAAAGGGAATCTTTGTAGTTATAAATATACAATTTAAAGGAAGATTCAAAGCTTAATGGCGAATTAATAAACAAAAAGATGCCCATCTTAGGTTATTATATTCCATTGAATGTTACTTGAGATTAGTAGAAAACAAGGCATATACACCAAGGAAGCTAAAGAACCTTGAGCTTCCCCCACACCAAGAAATATGTTGAAGCCCTTTTTGATGCTCATAAGCAACCTCTCGTTGCGTCCTCCTCTCTCTATAAAGCCAAAACTAAACCCTGACCCATGTCTTCCAGTTCCATTCAGCTAACGTATTGATCCAATTTGAAACCAAATGGCTCCCAAAAACCAGCCCACTTATGAAGATTTTGAACCTCTGGTTGAAGCTTCTGAAGAAGATGGCTGCAGCATTCTCTCCCTACACGTTCCTGGTTTGTCCTTTTCTTTAACGATAACGGGTTGTCTCTTATGGAGAAACTATGGCTGCTCGGTTTGATAGCTATTTGATTCTTAAGTTAGGGTTTGAGAATGTAGCTCGTGATCTGCGAGATCTCATTTTGGTTGGAGAAGGGAATGAAACATTCTTTATAAAGATGTGTAAACCTCTCCCTAACAGACACGTTTTAAAACCACGAGGCTGATGGTCATATTGTCTATTTTGTCCCGTTAAGTATCGTCATCGGTCTTATGATTTTAAAACGTGTGTCTGTTTCGGAGAGGTCTTCACACCTTTATAAATAATACATCGTTCCCCTCTCCAACCGATGTGGAATTTTTGTAATGGTATAGAAATCTCTCTCTATCAAATGCGTTTTAAAATCGTGAGGCTGACTAGTGATATTGTCCGCTTTGGCCCGTTACGTATCGCCGTCAGCCTCACAGTTTTAAAACGTGTTTGCTAATGAGAGGTTTCTACACCCTTATAAAGAATATATCGTTCCCATCTCCAACCGATGTGAGATCTTTAGAAAGGTGTAGAAACTTTTCCCTAATAGACGCGTTTTAAAACCGGTGAAGCCCACAGCAGTGTTGTTTGCTTTGGCCCATTACGTATCGCCATCAGCCTCATGGTTTTAAAAATGTTTTAAAAACGGTGAGGGCGACAGTGGTATTGTCCGCTTTGGCCTGTTACGTATCGTCATCAACCTCATGATTTTAAAACGTGTTTGCTAACGAGAGGTTTCCACACCCTTATAAGGAATACATCGTTCCCCTATCCAACTGACGTGGAATCTTTATAAGGGTGTAGAAACCTCTCCCTAGCGGACGCATTTTAAAATCGTGAGGCTGACGGTGATATTGTCAGCTTTGGCTCGTTACATATAGTCGTTAACCTCACGGTTTTAAAACGCGTATGTTAGGTAGGAGTTTCCACACCCTTAACGTTTTGTTTCTCTTTTCAACCAACGTGGGATCTGACATTAGCATTTTCAAGATATAAATTGAGTTTTATAAACTAAAGCAGACAATATCCAGTAGTAGCTTAGTTCTCTTATTCTGCACTACAGGTTTTCGCAGAGAGCAAATTCGGGTTCAAGTATCCTCCACAAGAAAGCTGAGGATCTCCGGCGAGCGGCCTTACCGGAACAAGACATGGCAGCGTTTCCACAAGGAGTTTGAAATCCCATCAAACTGCACCACCTCTAAAATTACAGCCAAGTACAAGGACGGCATCCTTCATGTCCGTCAGCCATTGCAGCCACAGGACGTGTCGGAGCCGCCACGCACGGCAGCTCCCAACCCACCGCCACCGCAGCAGCAGCAGCAAAATGGCCAGCAACAAGCTGAGGAACCAGAGAAGAAGAGCAGCCCAGCCGCCAATGGAAAAGCGGAAGCCAAAAGCAATAGAGAAAGAGAAGGAAGTACTTGCAACGGTGACAAGATCAGTGGTCGAGCTGGGCGGCTGAAGGAGGTGGCTCCTGGATTGTTGGGGAAGTTTATTTTGCCTGTTTTGGCGGCTGTGTTGCTTTTCCTGTTGGCTAAGAGGTTGGATCAGAACATGGCTGGTGGAGCCGGAGAATCTCGGCTGTGA

mRNA sequence

ATGTCAAACGAGACATTAGATCCGTTAACCAAAGGTTTTCGCAGAGAGCAAATTCGGGTTCAAGTATCCTCCACAAGAAAGCTGAGGATCTCCGGCGAGCGGCCTTACCGGAACAAGACATGGCAGCGTTTCCACAAGGAGTTTGAAATCCCATCAAACTGCACCACCTCTAAAATTACAGCCAAGTACAAGGACGGCATCCTTCATGTCCGTCAGCCATTGCAGCCACAGGACGTGTCGGAGCCGCCACGCACGGCAGCTCCCAACCCACCGCCACCGCAGCAGCAGCAGCAAAATGGCCAGCAACAAGCTGAGGAACCAGAGAAGAAGAGCAGCCCAGCCGCCAATGGAAAAGCGGAAGCCAAAAGCAATAGAGAAAGAGAAGGAAGTACTTGCAACGGTGACAAGATCAGTGGTCGAGCTGGGCGGCTGAAGGAGGTGGCTCCTGGATTGTTGGGGAAGTTTATTTTGCCTGTTTTGGCGGCTGTGTTGCTTTTCCTGTTGGCTAAGAGGTTGGATCAGAACATGGCTGGTGGAGCCGGAGAATCTCGGCTGTGA

Coding sequence (CDS)

ATGTCAAACGAGACATTAGATCCGTTAACCAAAGGTTTTCGCAGAGAGCAAATTCGGGTTCAAGTATCCTCCACAAGAAAGCTGAGGATCTCCGGCGAGCGGCCTTACCGGAACAAGACATGGCAGCGTTTCCACAAGGAGTTTGAAATCCCATCAAACTGCACCACCTCTAAAATTACAGCCAAGTACAAGGACGGCATCCTTCATGTCCGTCAGCCATTGCAGCCACAGGACGTGTCGGAGCCGCCACGCACGGCAGCTCCCAACCCACCGCCACCGCAGCAGCAGCAGCAAAATGGCCAGCAACAAGCTGAGGAACCAGAGAAGAAGAGCAGCCCAGCCGCCAATGGAAAAGCGGAAGCCAAAAGCAATAGAGAAAGAGAAGGAAGTACTTGCAACGGTGACAAGATCAGTGGTCGAGCTGGGCGGCTGAAGGAGGTGGCTCCTGGATTGTTGGGGAAGTTTATTTTGCCTGTTTTGGCGGCTGTGTTGCTTTTCCTGTTGGCTAAGAGGTTGGATCAGAACATGGCTGGTGGAGCCGGAGAATCTCGGCTGTGA

Protein sequence

MSNETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVRQPLQPQDVSEPPRTAAPNPPPPQQQQQNGQQQAEEPEKKSSPAANGKAEAKSNREREGSTCNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL
BLAST of Carg13970-RA vs. NCBI nr
Match: XP_022958345.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata])

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0

Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GFRREQIRVQVSSTRKLRISGERPY+NKTWQRFHKEFEIPSNCTTS ITAKYKDGILHVR
Sbjct: 33  GFRREQIRVQVSSTRKLRISGERPYQNKTWQRFHKEFEIPSNCTTSNITAKYKDGILHVR 92

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST
Sbjct: 93  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 152

Query: 132 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 186
           CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL
Sbjct: 153 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 206

BLAST of Carg13970-RA vs. NCBI nr
Match: XP_023534144.1 (uncharacterized protein LOC111795792 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 2.8e-63
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0

Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GFRREQIRVQVSSTRKLRISGERPYRNKT QRFHKEFEIPSNCTTS ITAKYKDGILHVR
Sbjct: 33  GFRREQIRVQVSSTRKLRISGERPYRNKTLQRFHKEFEIPSNCTTSNITAKYKDGILHVR 92

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSN EREGS+
Sbjct: 93  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNTEREGSS 152

Query: 132 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 186
           CNGDKI+ RAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL
Sbjct: 153 CNGDKITSRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 206

BLAST of Carg13970-RA vs. NCBI nr
Match: XP_022995333.1 (uncharacterized protein LOC111490909 [Cucurbita maxima])

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 164/174 (94.25%), Postives = 170/174 (97.70%), Query Frame = 0

Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GFR+EQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR
Sbjct: 33  GFRKEQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 92

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NGKA+AKS+REREGS+
Sbjct: 93  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGKAKAKSSREREGSS 152

Query: 132 CNGDKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQNMAGGAGESRL 186
           CNGDKI+ RAGRLKEVAPGLLGKF+L VLAAVLLFLLAKRLDQNMAGGA ESRL
Sbjct: 153 CNGDKITSRAGRLKEVAPGLLGKFVLTVLAAVLLFLLAKRLDQNMAGGA-ESRL 205

BLAST of Carg13970-RA vs. NCBI nr
Match: XP_022153773.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-28
Identity = 107/178 (60.11%), Postives = 124/178 (69.66%), Query Frame = 0

Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
           GF +EQIRVQVSST KLRISGERPYRNK WQRFHKEF+IP NC TS ITAKYK GILHVR
Sbjct: 73  GFSKEQIRVQVSSTGKLRISGERPYRNKAWQRFHKEFQIPPNCDTSSITAKYKGGILHVR 132

Query: 72  QPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNREREGST 131
           QPL+ +   +       XXXXXXXXXXXXXXXXXXXXXXXX   +G AEA+ ++E   + 
Sbjct: 133 QPLREESKQQ---AAEAXXXXXXXXXXXXXXXXXXXXXXXXVAADGTAEARISKETTNAL 192

Query: 132 CNG---------------DKISGRAGRLKEVAPGLLGKFILPVLAAVLLFLLAKRLDQ 175
            +                DKI  +AGRLKE+  G + K ILP+L A LLFL AKRL++
Sbjct: 193 EDNADKARKDAQEHPNIRDKIMSQAGRLKEMITGNMVKLILPILLAALLFLYAKRLNR 247

BLAST of Carg13970-RA vs. NCBI nr
Match: XP_004149651.1 (PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus] >KGN54031.1 hypothetical protein Csa_4G269140 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 5.3e-17
Identity = 72/172 (41.86%), Postives = 87/172 (50.58%), Query Frame = 0

Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKT---WQRFHKEFEIPSNCTTSKITAKYKDGIL 71
           GF +EQI+VQVSS RKLRISGER  +N      QRF+KEFEIPSNC T+ ITAKYK GIL
Sbjct: 35  GFNKEQIKVQVSSKRKLRISGERALKNNNKHIMQRFNKEFEIPSNCNTTNITAKYKSGIL 94

Query: 72  HVRQPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNRERE 131
           HVRQPLQ QD S+                                       A ++ E  
Sbjct: 95  HVRQPLQ-QDQSDSKQQPHHNPILEDQKVKQTNL------------------ASNHNEPH 154

Query: 132 GSTCNGDK--ISGRAGRLKEVAPGLLGKFILPVL--AAVLLFLLAKRLDQNM 177
             T   D+   +    RLKE  P +  K +LP+L  +A LL   A+RL   M
Sbjct: 155 SDTPKDDRKFTTSTGQRLKETIPCVFLKLVLPILLPSAFLLLWYARRLSPIM 187

BLAST of Carg13970-RA vs. TAIR10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 4  ETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKY 63
          E L     GFR+EQ++VQV++TRKLR+ G+RP     W RF KEF IP N     ++AK+
Sbjct: 30 EALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWIRFRKEFPIPPNIDVDSVSAKF 89

Query: 64 KDGILHVRQP 74
          +   L VR P
Sbjct: 90 EGANLVVRLP 99

BLAST of Carg13970-RA vs. TAIR10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-11
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 12 GFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHVR 71
          GF++EQ++V V++TRKLR++GERP     W RFH+E  +P       ++A +KD  L++R
Sbjct: 34 GFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFHQEIPVPLTVDIDSVSAMFKDNKLYIR 93

Query: 72 QP 74
           P
Sbjct: 94 HP 95

BLAST of Carg13970-RA vs. TAIR10
Match: AT5G04890.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-09
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

BLAST of Carg13970-RA vs. TAIR10
Match: AT1G53540.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 9.6e-05
Identity = 26/81 (32.10%), Postives = 40/81 (49.38%), Query Frame = 0

Query: 12  GFRREQIRVQVSSTRKLRISGER----PYRNKTWQR-------FHKEFEIPSNCTTSKIT 71
           G R+E+++V+V     L+ISGER      +N  W R       F + F +P N    +I 
Sbjct: 69  GLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIK 128

Query: 72  AKYKDGILHVRQPLQPQDVSE 82
           A  ++G+L V  P  P+   E
Sbjct: 129 ASMENGVLSVTVPKVPEKKPE 149

BLAST of Carg13970-RA vs. TAIR10
Match: AT3G46230.1 (heat shock protein 17.4)

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 23/73 (31.51%), Postives = 38/73 (52.05%), Query Frame = 0

Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNK----TWQR-------FHKEFEIPSNCTTSKIT 71
           G ++E+++V+V     L+ISGER   N+    TW R       F + F +P N    ++ 
Sbjct: 68  GLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVK 127

Query: 72  AKYKDGILHVRQP 74
           A  ++G+L V  P
Sbjct: 128 ASMENGVLSVTVP 140

BLAST of Carg13970-RA vs. Swiss-Prot
Match: sp|D5K211|RTM2A_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

BLAST of Carg13970-RA vs. Swiss-Prot
Match: sp|D9UBX6|RTM2B_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

BLAST of Carg13970-RA vs. Swiss-Prot
Match: sp|D9UBX4|RTM2C_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

BLAST of Carg13970-RA vs. Swiss-Prot
Match: sp|Q9M670|RTM2_ARATH (Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K+ +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

BLAST of Carg13970-RA vs. Swiss-Prot
Match: sp|D9UC01|RTM2D_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.2e-08
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 12  GFRREQIRV-QVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKYKDGILHV 71
           GF +EQ++V  V S++ +R++GERP  N+ W RF++ F +P NC   KI   +K  +L +
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEVFTVPQNCLVDKIHGSFKKNVLTI 99

Query: 72  RQP 74
             P
Sbjct: 100 TMP 102

BLAST of Carg13970-RA vs. TrEMBL
Match: tr|A0A0A0L1N9|A0A0A0L1N9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269140 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 72/172 (41.86%), Postives = 87/172 (50.58%), Query Frame = 0

Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNKT---WQRFHKEFEIPSNCTTSKITAKYKDGIL 71
           GF +EQI+VQVSS RKLRISGER  +N      QRF+KEFEIPSNC T+ ITAKYK GIL
Sbjct: 35  GFNKEQIKVQVSSKRKLRISGERALKNNNKHIMQRFNKEFEIPSNCNTTNITAKYKSGIL 94

Query: 72  HVRQPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNRERE 131
           HVRQPLQ QD S+                                       A ++ E  
Sbjct: 95  HVRQPLQ-QDQSDSKQQPHHNPILEDQKVKQTNL------------------ASNHNEPH 154

Query: 132 GSTCNGDK--ISGRAGRLKEVAPGLLGKFILPVL--AAVLLFLLAKRLDQNM 177
             T   D+   +    RLKE  P +  K +LP+L  +A LL   A+RL   M
Sbjct: 155 SDTPKDDRKFTTSTGQRLKETIPCVFLKLVLPILLPSAFLLLWYARRLSPIM 187

BLAST of Carg13970-RA vs. TrEMBL
Match: tr|A0A1S3BMF5|A0A1S3BMF5_CUCME (uncharacterized protein LOC103491622 OS=Cucumis melo OX=3656 GN=LOC103491622 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 71/171 (41.52%), Postives = 87/171 (50.88%), Query Frame = 0

Query: 12  GFRREQIRVQVSSTRKLRISGERPYRNK---TWQRFHKEFEIPSNCTTSKITAKYKDGIL 71
           GF +EQI+VQVSS RKLRISGER  ++    T QRF+KEFEIPSNC T+ ITAKYK GIL
Sbjct: 35  GFEKEQIKVQVSSKRKLRISGERALKSNNKHTMQRFYKEFEIPSNCNTANITAKYKSGIL 94

Query: 72  HVRQPLQPQDVSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKAEAKSNRERE 131
           HVRQPLQ QD S                                        +  N    
Sbjct: 95  HVRQPLQ-QDQSN-----------------SKQQPHHNPILEDQEIKQTNLASNHNEPHS 154

Query: 132 GSTCNGDKISGRAG-RLKEVAPGLLGKFILPVL--AAVLLFLLAKRLDQNM 177
            +  N  K++   G RLKE  P +  K +LP+L  +A+LL   A+ L   M
Sbjct: 155 DTPKNNGKLTISTGQRLKETIPCVFLKLVLPILLPSALLLLWYARSLSPIM 187

BLAST of Carg13970-RA vs. TrEMBL
Match: tr|A0A022S479|A0A022S479_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a012257mg PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 4  ETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKY 63
          +TL     GF +EQ+RVQ++ TR L+ISG RP  +  W  FHK+F++  NC T+KITAK+
Sbjct: 29 DTLLIYLPGFTKEQLRVQLTRTRILKISGARPLGDNKWSSFHKDFDVSENCDTNKITAKF 88

Query: 64 KDGILHVRQP 74
          ++GIL+VRQP
Sbjct: 89 EEGILYVRQP 98

BLAST of Carg13970-RA vs. TrEMBL
Match: tr|A0A1S3YLL2|A0A1S3YLL2_TOBAC (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107777447 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 3   NETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAK 62
           ++TL     GF++EQ+RVQ++ T  L+ISG+RP     WQRF K+F +  NC  SKI+AK
Sbjct: 30  SDTLHLNIPGFKKEQVRVQLTKTGILKISGQRPIGQNKWQRFQKDFPVAENCDKSKISAK 89

Query: 63  YKDGILHVRQP 74
           +++GILHV+QP
Sbjct: 90  FENGILHVKQP 100

BLAST of Carg13970-RA vs. TrEMBL
Match: tr|A0A1J6HXL8|A0A1J6HXL8_NICAT (Protein restricted tev movement 2 OS=Nicotiana attenuata OX=49451 GN=RTM2_3 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 4   ETLDPLTKGFRREQIRVQVSSTRKLRISGERPYRNKTWQRFHKEFEIPSNCTTSKITAKY 63
           +TL     GF++EQ+RVQ++ T  L+ISG+RP     WQRFHK+F    NC  SKI+AK+
Sbjct: 31  DTLQLNLPGFKKEQLRVQLTRTGILKISGQRPIGQNKWQRFHKDFPAVENCDKSKISAKF 90

Query: 64  KDGILHVRQP 74
           ++G+LHV+QP
Sbjct: 91  ENGVLHVKQP 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022958345.11.6e-6698.85inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata][more]
XP_023534144.12.8e-6396.55uncharacterized protein LOC111795792 [Cucurbita pepo subsp. pepo][more]
XP_022995333.11.6e-6194.25uncharacterized protein LOC111490909 [Cucurbita maxima][more]
XP_022153773.13.0e-2860.11inactive protein RESTRICTED TEV MOVEMENT 2-like [Momordica charantia][more]
XP_004149651.15.3e-1741.86PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus] >KGN54031.1 hy... [more]
Match NameE-valueIdentityDescription
AT2G27140.11.1e-1147.14HSP20-like chaperones superfamily protein[more]
AT5G20970.13.1e-1143.55HSP20-like chaperones superfamily protein[more]
AT5G04890.11.7e-0939.68HSP20-like chaperones superfamily protein[more]
AT1G53540.19.6e-0532.10HSP20-like chaperones superfamily protein[more]
AT3G46230.12.1e-0431.51heat shock protein 17.4[more]
Match NameE-valueIdentityDescription
sp|D5K211|RTM2A_ARATH3.0e-0839.68Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
sp|D9UBX6|RTM2B_ARATH3.0e-0839.68Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
sp|D9UBX4|RTM2C_ARATH3.0e-0839.68Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
sp|Q9M670|RTM2_ARATH3.0e-0839.68Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 S... [more]
sp|D9UC01|RTM2D_ARATH5.2e-0839.68Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0L1N9|A0A0A0L1N9_CUCSA3.5e-1741.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269140 PE=3 SV=1[more]
tr|A0A1S3BMF5|A0A1S3BMF5_CUCME1.0e-1641.52uncharacterized protein LOC103491622 OS=Cucumis melo OX=3656 GN=LOC103491622 PE=... [more]
tr|A0A022S479|A0A022S479_ERYGU1.5e-1252.86Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a012257mg PE... [more]
tr|A0A1S3YLL2|A0A1S3YLL2_TOBAC3.4e-1250.70inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Nicotiana tabacum OX=4097 GN=... [more]
tr|A0A1J6HXL8|A0A1J6HXL8_NICAT3.4e-1251.43Protein restricted tev movement 2 OS=Nicotiana attenuata OX=49451 GN=RTM2_3 PE=3... [more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002068A-crystallin/Hsp20_dom
IPR008978HSP20-like_chaperone
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg13970Carg13970gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg13970-RA.CDS.2Carg13970-RA.CDS.2CDS
Carg13970-RA.CDS.1Carg13970-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg13970-RA.exon.2Carg13970-RA.exon.2exon
Carg13970-RA.exon.1Carg13970-RA.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg13970-RACarg13970-RA-proteinpolypeptide


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 9..112
e-value: 5.2E-14
score: 53.9
IPR008978HSP20-like chaperoneSUPERFAMILYSSF49764HSP20-like chaperonescoord: 12..75
IPR002068Alpha crystallin/Hsp20 domainPFAMPF00011HSP20coord: 11..80
e-value: 2.2E-8
score: 34.1
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 1..89
score: 15.868
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..138
NoneNo IPR availablePANTHERPTHR43670:SF17SUBFAMILY NOT NAMEDcoord: 6..127
NoneNo IPR availablePANTHERPTHR43670FAMILY NOT NAMEDcoord: 6..127
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 12..71
e-value: 1.0713E-13
score: 62.1864