Carg13968-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13968-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zeaxanthin epoxidase, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_097 : 2692 .. 5356 (-)
Sequence length	1043

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCACAGTCCATTCCATTTCCCGCCCCAACCTCCCTCTCCCTCTTTCCTTCTCCATTCATTCATCTTCCCCTTCCAATTCCCTTACTCCATACCCACACACAAGAACCAAATCAACCGCCTCCGTCCTTCCGCCATTGTTGCTGCGTTCTGATCTCAATCTCACCTTCAAATCAAGGGGACGATCACTTCTTCAACCTCCACGAGCTTCTCAGTCTGAATTCGAGCCTCAATCTTCTTCTGTCCGCTGGCTTCTCGTTCCCGTTGGTTAGCGCATTCTGAATCTCTACCATTGTTCTGTTCGATTGTATCTTATATTTGATTTGAAGATTTCGTGATTTCTTCACAGGCGATGGCGATTGGAAACATATCGGTTCCAAAGTTGAAATGCCTGATGCGTTTGAAATCGTCTCGGTCAGTACTTTTCATTGAGGCTCTTCAGCCCTTGCGAGTCTCTATTGTGTGATATTCGAGCTCGTTTTAACTCTTTTTGGCTGTCGAAACTCATCTTAATGCAGAATGAGGTCACTGTTGGGCGCCTTCCTGAGAAAGCTGACATTGCAATTCCAGTTGCTACAGGTGAGTTTACTCCAAACATCTGTTGCTACTTGTTTGATTTGATGCTTTCAATTCAATTGCTACAGATCTGACAGTTTCAAGTTTTCCTTTGAGTTTTTGGAATGCAGAACTTGTGGATTGTATTGTGCCACTAACTTCACTGCGATTTTCTGAAATGAAAACAGTTTCTGCTGTACATGCTCGCATCAAAAAGCAAGAAGACAGGCTTTTAGTCATAGATCTAGACAGCACAAATGGAACTTTTATTGATGATAAGAGACTCAAGCCTGGAGTTGTTGCTGCTGTATCATCTGGGAATTGCATTTCTTTTGGTAACTTGCCCCCTCAAACTCAATCCAAATTTAATTGTTAGGCTGGTTGGATCACCTCACACTTTCTTATAACAGATTTCATATTTCTCAAGTAAACATTTAAGTTCTTAGCTTGAAGCGTGAAAACATCACTAGAATATATATATATATATATATATATGTCTAAAACAGAGATATCTATAGATTGAAGTAGTGTTTATTAGTTTATATGGAAAAACCAAATGGTCATGAGGCTTAAAATTTTCTTTGAAGGTGAAGGATCTCATTTGCTGTTTTTCGGTTTCGGTTTGGTGAATGCATTTGGTTATGATTATTAGACCATTCAAATCATTGTAGGGTATCTGAGATAGTTAGTCGTCTAAGCTCACCGCTAGTAGATATTTGTCCATTTTGACTCGTTACGTATCGTTGTCAGGCTTACAGTTTTAAATGCGTTTACTAAGGAGATGTTTCCACACTCTTATAAGAAATGTTTCATATCCCTCTCCAACCAACGTGCGATCTCTCATAATTGGACTCGAAATTCATTATAATCGCTACTCAAATCCTAGCACTTGACTCATCCTCTTTGTAAGGCTAAACAAGAGAACCTCTTAGAAAATACTGTGACTTGTGTCTATACATTATTATTGGCTTGAATTCATGAATTGGGTGGCTATACATTGAGTTTATTCTGTATTTTGTTTTGTGGTACAACTCGACTTGCATAGTGTAAATAACTTCAAAATTTTACATGCAGTCAGCTTTGTTGGAGGATGAAAATTTCACGTTGGCTAATTTAGGGAATGATGATGGGTTTATAAGTGAGGAATACTAACTCCATTGGTATGAGGCCTTTTCGGAGAAACCCAAAGCAAAGCCATGAGAGTTTACACTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGGTATTAGAGTCATCCCCTGAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATGTTGAAGAAAGGACTCCAAAAGAAAAAGAGTTGAGCCTCCTCAAAGGCATAGTAAAAAATGACTAAGACTCCAAAAGAAAAAGGAGTCGAGCCTCGATTAAAGGGAGGCGTACTTTGTTCGATGGGAGGCGTGGGATGATGAAAGTCCCACATTAGCTAATTTAAGAAATGATAATGAGTTTATAAGTGAGGAATACTAACTCCGTTGGTACGAGGCCTTTTGGGGAAGCCCAAAATAAAGTCACGAGAGCTTATGCTCAAAGTGGACAATATCATACTATTACAGAGAGTCGTGTTCATCTAACAAGCTTAATTGATTAACTTTGGGATATCTCTTTTGTTGACAGGGGACATCCATCTAGCCATGTTTCAGGTGTCAAAGTTAAAGACTGATAAAGCCGCTAGCAAAATCCAAGAATCTGAGGACTCAATCGGTAACTCTGAAACAAGTTAAAAAAATGGTACATTTACATGTCTTCTAAGAGCAAATATGTGCAAAATTCTGCACATTCTGTATCGTAACAGTAATCTTTGCATGAAATTTTTCATATGAGTTGAAGAATATTGAAGAGCTAACGAGTCATCTGATCTCACTATTTGTTTTTTTAAGGCCATTTTAGAATACATCCATTTGATCCAAGCTATACTATCTAACCCTTTAAAAGAGTCCGATATGATAGAGCCTCCGCTTAAGATTCAAGTCAGGATTTAGAGTTTGGCCCCTACATCTTTCAAAGAGTTAAAAGCTATTCCTACAAATCAATATTCGGATTCTTTTAGTATATTTTA

mRNA sequence

ATGGAGTTCACAGTCCATTCCATTTCCCGCCCCAACCTCCCTCTCCCTCTTTCCTTCTCCATTCATTCATCTTCCCCTTCCAATTCCCTTACTCCATACCCACACACAAGAACCAAATCAACCGCCTCCGTCCTTCCGCCATTGTTGCTGCGTTCTGATCTCAATCTCACCTTCAAATCAAGGGGACGATCACTTCTTCAACCTCCACGAGCTTCTCAGTCTGAATTCGAGCCTCAATCTTCTTCTGTCCGCTGGCTTCTCGTTCCCGTTGGCGATGGCGATTGGAAACATATCGGTTCCAAAGTTGAAATGCCTGATGCGTTTGAAATCGTCTCGAATGAGGTCACTGTTGGGCGCCTTCCTGAGAAAGCTGACATTGCAATTCCAGTTGCTACAGAACTTGTGGATTGTATTGTGCCACTAACTTCACTGCGATTTTCTGAAATGAAAACAGTTTCTGCTGTACATGCTCGCATCAAAAAGCAAGAAGACAGGCTTTTAGTCATAGATCTAGACAGCACAAATGGAACTTTTATTGATGATAAGAGACTCAAGCCTGGAGTTGTTGCTGCTGTATCATCTGGGAATTGCATTTCTTTTGGGGACATCCATCTAGCCATGTTTCAGGTGTCAAAGTTAAAGACTGATAAAGCCGCTAGCAAAATCCAAGAATCTGAGGACTCAATCGGTAACTCTGAAACAAGTTAAAAAAATGGTACATTTACATGTCTTCTAAGAGCAAATATGTGCAAAATTCTGCACATTCTGTATCGTAACAGTAATCTTTGCATGAAATTTTTCATATGAGTTGAAGAATATTGAAGAGCTAACGAGTCATCTGATCTCACTATTTGTTTTTTTAAGGCCATTTTAGAATACATCCATTTGATCCAAGCTATACTATCTAACCCTTTAAAAGAGTCCGATATGATAGAGCCTCCGCTTAAGATTCAAGTCAGGATTTAGAGTTTGGCCCCTACATCTTTCAAAGAGTTAAAAGCTATTCCTACAAATCAATATTCGGATTCTTTTAGTATATTTTA

Coding sequence (CDS)

ATGGAGTTCACAGTCCATTCCATTTCCCGCCCCAACCTCCCTCTCCCTCTTTCCTTCTCCATTCATTCATCTTCCCCTTCCAATTCCCTTACTCCATACCCACACACAAGAACCAAATCAACCGCCTCCGTCCTTCCGCCATTGTTGCTGCGTTCTGATCTCAATCTCACCTTCAAATCAAGGGGACGATCACTTCTTCAACCTCCACGAGCTTCTCAGTCTGAATTCGAGCCTCAATCTTCTTCTGTCCGCTGGCTTCTCGTTCCCGTTGGCGATGGCGATTGGAAACATATCGGTTCCAAAGTTGAAATGCCTGATGCGTTTGAAATCGTCTCGAATGAGGTCACTGTTGGGCGCCTTCCTGAGAAAGCTGACATTGCAATTCCAGTTGCTACAGAACTTGTGGATTGTATTGTGCCACTAACTTCACTGCGATTTTCTGAAATGAAAACAGTTTCTGCTGTACATGCTCGCATCAAAAAGCAAGAAGACAGGCTTTTAGTCATAGATCTAGACAGCACAAATGGAACTTTTATTGATGATAAGAGACTCAAGCCTGGAGTTGTTGCTGCTGTATCATCTGGGAATTGCATTTCTTTTGGGGACATCCATCTAGCCATGTTTCAGGTGTCAAAGTTAAAGACTGATAAAGCCGCTAGCAAAATCCAAGAATCTGAGGACTCAATCGGTAACTCTGAAACAAGTTAA

Protein sequence

MEFTVHSISRPNLPLPLSFSIHSSSPSNSLTPYPHTRTKSTASVLPPLLLRSDLNLTFKSRGRSLLQPPRASQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGRLPEKADIAIPVATELVDCIVPLTSLRFSEMKTVSAVHARIKKQEDRLLVIDLDSTNGTFIDDKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSIGNSETS

Homology

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BLAST of Carg13968-RA vs. NCBI nr
Match: XP_023532653.1 (uncharacterized protein LOC111794752 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.6 bits (976), Expect = 4.0e-102
Identity = 202/235 (85.96%), Postives = 204/235 (86.81%), Query Frame = 0


Query: 1   MEFTVHSISRPNLPLPLSXXXXXXXXXXXLTPYPHTRTKSTASVLPPLLLRSDLNLTFKS 60
           MEFTVHSISRPNLPLPLS           LTPYPHTRTK+TAS+LPPLLLRSDLNLTFKS
Sbjct: 1   MEFTVHSISRPNLPLPLSFSIYSSSPSNSLTPYPHTRTKATASILPPLLLRSDLNLTFKS 60

Query: 61  RGRSLLQPPRASQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGRL 120
           RGRSLLQPPRASQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGRL
Sbjct: 61  RGRSLLQPPRASQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGRL 120

Query: 121 PEKADIAIPVATELVDCIVPLTSLRFSEMKTVSAVHARIKKQEDRLLVIDLDSTNGTFID 180
           PEKADIAIPVA                   TVSAVHARIKKQEDRLLVIDLDSTNGTFID
Sbjct: 121 PEKADIAIPVA-------------------TVSAVHARIKKQEDRLLVIDLDSTNGTFID 180

Query: 181 DKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSIGNSETS 236
           DKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDS GNSETS
Sbjct: 181 DKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSNGNSETS 216

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BLAST of Carg13968-RA vs. NCBI nr
Match: XP_022996302.1 (uncharacterized protein LOC111491570 [Cucurbita maxima])

HSP 1 Score: 377.9 bits (969), Expect = 2.6e-101
Identity = 201/235 (85.53%), Postives = 203/235 (86.38%), Query Frame = 0


Query: 1   MEFTVHSISRPNLPLPLSXXXXXXXXXXXLTPYPHTRTKSTASVLPPLLLRSDLNLTFKS 60
           MEFTVHSISRPNLPLPLS           LTPYPHTRTKSTAS+LPPLLLRSDLNLTFKS
Sbjct: 1   MEFTVHSISRPNLPLPLSFSLHSSSPSNSLTPYPHTRTKSTASILPPLLLRSDLNLTFKS 60

Query: 61  RGRSLLQPPRASQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGRL 120
           RGRSLLQP RA QSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNE+TVGRL
Sbjct: 61  RGRSLLQPLRAFQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEITVGRL 120

Query: 121 PEKADIAIPVATELVDCIVPLTSLRFSEMKTVSAVHARIKKQEDRLLVIDLDSTNGTFID 180
           PEKADIAIPVA                   TVSAVHARIKKQEDRLLVIDLDSTNGTFID
Sbjct: 121 PEKADIAIPVA-------------------TVSAVHARIKKQEDRLLVIDLDSTNGTFID 180

Query: 181 DKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSIGNSETS 236
           DKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSIGNSETS
Sbjct: 181 DKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSIGNSETS 216

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BLAST of Carg13968-RA vs. NCBI nr
Match: XP_022957686.1 (uncharacterized protein LOC111459151 [Cucurbita moschata])

HSP 1 Score: 374.8 bits (961), Expect = 2.2e-100
Identity = 200/235 (85.11%), Postives = 203/235 (86.38%), Query Frame = 0


Query: 1   MEFTVHSISRPNLPLPLSXXXXXXXXXXXLTPYPHTRTKSTASVLPPLLLRSDLNLTFKS 60
           MEFTVHSISRPNLPLPLS           LTPYPHTRTK+TAS+LPPLLLRSDLNLTFKS
Sbjct: 1   MEFTVHSISRPNLPLPLSFSTYSSSPSNSLTPYPHTRTKATASILPPLLLRSDLNLTFKS 60

Query: 61  RGRSLLQPPRASQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGRL 120
           R RSLLQP RASQSEFEP+SSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGRL
Sbjct: 61  RRRSLLQPLRASQSEFEPRSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGRL 120

Query: 121 PEKADIAIPVATELVDCIVPLTSLRFSEMKTVSAVHARIKKQEDRLLVIDLDSTNGTFID 180
           PEKADIAIPVA                   TVSAVHARIKKQEDRLLVIDLDSTNGTFID
Sbjct: 121 PEKADIAIPVA-------------------TVSAVHARIKKQEDRLLVIDLDSTNGTFID 180

Query: 181 DKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSIGNSETS 236
           DKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSIGNSETS
Sbjct: 181 DKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSIGNSETS 216

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BLAST of Carg13968-RA vs. NCBI nr
Match: XP_016900711.1 (PREDICTED: uncharacterized protein LOC103491680 isoform X1 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 4.6e-58
Identity = 137/206 (66.50%), Postives = 150/206 (72.82%), Query Frame = 0


Query: 31  TPYPHTRTKSTASVLPPLLLRSDLNLTFKSRGRSLLQPPRASQSEFEPQSSSVRWLLVPV 90
           TP  H  T S  S  P LL R  L++ F+ RGRSLL+  +AS           RWLLVPV
Sbjct: 19  TPSLHRSTLSGLS--PSLLPRLSLSIQFRPRGRSLLRHIQASS----------RWLLVPV 78

Query: 91  GDGDWKHIGSKVEMPDAFEIVSNEVTVGRLPEKADIAIPVATELVDCIVPLTSLRFSEMK 150
           GDG+WKHIGSKVEMPDAFEIVSNEVTVGRLP+KADI IPVA                   
Sbjct: 79  GDGEWKHIGSKVEMPDAFEIVSNEVTVGRLPDKADIVIPVA------------------- 138

Query: 151 TVSAVHARIKKQEDRLLVIDLDSTNGTFIDDKRLKPGVVAAVSSGNCISFGDIHLAMFQV 210
           TVS  HARIK QED+LLVIDLDSTNGTFIDDKRL PGVVAAVSSGNCI+FGDIHLAMFQV
Sbjct: 139 TVSGQHARIKNQEDKLLVIDLDSTNGTFIDDKRLNPGVVAAVSSGNCITFGDIHLAMFQV 193

Query: 211 SKLKTDKAASKIQ-ESEDSIGNSETS 236
           SKLKT +AASKIQ E+E+ I +SETS
Sbjct: 199 SKLKTVEAASKIQEETEEPISDSETS 193

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BLAST of Carg13968-RA vs. NCBI nr
Match: XP_004149650.1 (PREDICTED: uncharacterized protein LOC101219513 isoform X1 [Cucumis sativus] >KGN54033.1 hypothetical protein Csa_4G269160 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 3.9e-57
Identity = 130/185 (70.27%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 52  SDLNLTFKSRGRSLLQPPRASQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIV 111
           S L++ F+ RGRSLLQP +AS           RWLLVPVGDG+WKHIGSKVEMPDAFEIV
Sbjct: 28  SSLSIQFRPRGRSLLQPLQASS----------RWLLVPVGDGEWKHIGSKVEMPDAFEIV 87

Query: 112 SNEVTVGRLPEKADIAIPVATELVDCIVPLTSLRFSEMKTVSAVHARIKKQEDRLLVIDL 171
           SNEVTVGRLP+KADI IPVA                   TVSA HARIK QEDRLLVIDL
Sbjct: 88  SNEVTVGRLPDKADIVIPVA-------------------TVSAQHARIKNQEDRLLVIDL 147

Query: 172 DSTNGTFIDDKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQ-ESEDSIG 231
           DSTNGTFI+DKRL PGVVAAVSSGN I+FGDIHLAMFQV+KLKT +AASKIQ E+E+SI 
Sbjct: 148 DSTNGTFINDKRLNPGVVAAVSSGNSITFGDIHLAMFQVAKLKTVEAASKIQEETEESIS 183

Query: 232 NSETS 236
           +SETS
Sbjct: 208 DSETS 183

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BLAST of Carg13968-RA vs. TAIR10
Match: AT2G21530.1 (SMAD/FHA domain-containing protein )

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-33
Identity = 85/171 (49.71%), Postives = 102/171 (59.65%), Query Frame = 0


Query: 65  LLQPPRASQSEFE-PQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGRLPEK 124
           +++  RAS  E + P S   RWLL PVGDGD +HIG KV MP  FEI S +VT+GRLPEK
Sbjct: 66  VVRTTRASLDENQSPTSGGERWLLKPVGDGDTRHIGYKVAMPAPFEISSGQVTIGRLPEK 125

Query: 125 ADIAIPVATELVDCIVPLTSLRFSEMKTVSAVHARIKKQEDRLLVIDLDSTNGTFIDDKR 184
           AD+ IPVA                   TVS VHA I   E  LLV D++STNGTFI+DKR
Sbjct: 126 ADVVIPVA-------------------TVSGVHATINTNEKNLLVTDMNSTNGTFIEDKR 185

Query: 185 LKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSIGNSET 235
           L PGV A    G  I+FGD +LA+F+V KL         Q+SE+SI    T
Sbjct: 186 LIPGVAAPAFPGTRITFGDTNLAIFRVFKL---------QDSEESIEKPTT 208

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BLAST of Carg13968-RA vs. TrEMBL
Match: tr|A0A1S4DXK3|A0A1S4DXK3_CUCME (uncharacterized protein LOC103491680 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491680 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.0e-58
Identity = 137/206 (66.50%), Postives = 150/206 (72.82%), Query Frame = 0


Query: 31  TPYPHTRTKSTASVLPPLLLRSDLNLTFKSRGRSLLQPPRASQSEFEPQSSSVRWLLVPV 90
           TP  H  T S  S  P LL R  L++ F+ RGRSLL+  +AS           RWLLVPV
Sbjct: 19  TPSLHRSTLSGLS--PSLLPRLSLSIQFRPRGRSLLRHIQASS----------RWLLVPV 78

Query: 91  GDGDWKHIGSKVEMPDAFEIVSNEVTVGRLPEKADIAIPVATELVDCIVPLTSLRFSEMK 150
           GDG+WKHIGSKVEMPDAFEIVSNEVTVGRLP+KADI IPVA                   
Sbjct: 79  GDGEWKHIGSKVEMPDAFEIVSNEVTVGRLPDKADIVIPVA------------------- 138

Query: 151 TVSAVHARIKKQEDRLLVIDLDSTNGTFIDDKRLKPGVVAAVSSGNCISFGDIHLAMFQV 210
           TVS  HARIK QED+LLVIDLDSTNGTFIDDKRL PGVVAAVSSGNCI+FGDIHLAMFQV
Sbjct: 139 TVSGQHARIKNQEDKLLVIDLDSTNGTFIDDKRLNPGVVAAVSSGNCITFGDIHLAMFQV 193

Query: 211 SKLKTDKAASKIQ-ESEDSIGNSETS 236
           SKLKT +AASKIQ E+E+ I +SETS
Sbjct: 199 SKLKTVEAASKIQEETEEPISDSETS 193

[Close]

BLAST of Carg13968-RA vs. TrEMBL
Match: tr|A0A0A0KX03|A0A0A0KX03_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269160 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.6e-57
Identity = 130/185 (70.27%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 52  SDLNLTFKSRGRSLLQPPRASQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIV 111
           S L++ F+ RGRSLLQP +AS           RWLLVPVGDG+WKHIGSKVEMPDAFEIV
Sbjct: 28  SSLSIQFRPRGRSLLQPLQASS----------RWLLVPVGDGEWKHIGSKVEMPDAFEIV 87

Query: 112 SNEVTVGRLPEKADIAIPVATELVDCIVPLTSLRFSEMKTVSAVHARIKKQEDRLLVIDL 171
           SNEVTVGRLP+KADI IPVA                   TVSA HARIK QEDRLLVIDL
Sbjct: 88  SNEVTVGRLPDKADIVIPVA-------------------TVSAQHARIKNQEDRLLVIDL 147

Query: 172 DSTNGTFIDDKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQ-ESEDSIG 231
           DSTNGTFI+DKRL PGVVAAVSSGN I+FGDIHLAMFQV+KLKT +AASKIQ E+E+SI 
Sbjct: 148 DSTNGTFINDKRLNPGVVAAVSSGNSITFGDIHLAMFQVAKLKTVEAASKIQEETEESIS 183

Query: 232 NSETS 236
           +SETS
Sbjct: 208 DSETS 183

[Close]

BLAST of Carg13968-RA vs. TrEMBL
Match: tr|A0A1S4DXL0|A0A1S4DXL0_CUCME (uncharacterized protein LOC103491680 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491680 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 110/171 (64.33%), Postives = 119/171 (69.59%), Query Frame = 0


Query: 31  TPYPHTRTKSTASVLPPLLLRSDLNLTFKSRGRSLLQPPRASQSEFEPQSSSVRWLLVPV 90
           TP  H  T S  S  P LL R  L++ F+ RGRSLL+  +AS           RWLLVPV
Sbjct: 19  TPSLHRSTLSGLS--PSLLPRLSLSIQFRPRGRSLLRHIQASS----------RWLLVPV 78

Query: 91  GDGDWKHIGSKVEMPDAFEIVSNEVTVGRLPEKADIAIPVATELVDCIVPLTSLRFSEMK 150
           GDG+WKHIGSKVEMPDAFEIVSNEVTVGRLP+KADI IPVA                   
Sbjct: 79  GDGEWKHIGSKVEMPDAFEIVSNEVTVGRLPDKADIVIPVA------------------- 138

Query: 151 TVSAVHARIKKQEDRLLVIDLDSTNGTFIDDKRLKPGVVAAVSSGNCISFG 202
           TVS  HARIK QED+LLVIDLDSTNGTFIDDKRL PGVVAAVSSGNCI+FG
Sbjct: 139 TVSGQHARIKNQEDKLLVIDLDSTNGTFIDDKRLNPGVVAAVSSGNCITFG 158

[Close]

BLAST of Carg13968-RA vs. TrEMBL
Match: tr|A0A2C9VB27|A0A2C9VB27_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G111800 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.0e-45
Identity = 111/233 (47.64%), Postives = 144/233 (61.80%), Query Frame = 0


Query: 1   MEFTVHSISRPNLPLPLSXXXXXXXXXXXLTPYPHTRTKSTASVLPPLLLRSDLNL-TFK 60
           M+ T  S+S+  LP   S               P    +++ ++  P +  S L +   K
Sbjct: 1   MDVTARSLSQAKLPAGCSTSVSPTIFHSK----PSILAQNSIALQSPKIPFSQLQVFRIK 60

Query: 61  SRGRSLLQPPRASQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGR 120
           +R + +L+P  AS+SE        RWLL PVGDGD +HIG K++MPDAFEI S+EVTVGR
Sbjct: 61  ARKQRILEPVHASESEISSTDVQDRWLLQPVGDGDTRHIGYKMKMPDAFEIASSEVTVGR 120

Query: 121 LPEKADIAIPVATELVDCIVPLTSLRFSEMKTVSAVHARIKKQEDRLLVIDLDSTNGTFI 180
           LPEKAD+ IPVA                   TVS +HARI+K+E  LLV DLDSTNGT+I
Sbjct: 121 LPEKADVVIPVA-------------------TVSGIHARIQKKEGNLLVTDLDSTNGTYI 180

Query: 181 DDKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSIGNS 233
           DDKRLKPGV A V SG+ ++FGDIHLAMF+VSKL+  ++ASK +ESE+    S
Sbjct: 181 DDKRLKPGVAANVPSGSLLTFGDIHLAMFRVSKLENVESASKPEESEEKAETS 210

[Close]

BLAST of Carg13968-RA vs. TrEMBL
Match: tr|A0A2P4L118|A0A2P4L118_QUESU (Zeaxanthin epoxidase, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_40179 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.0e-43
Identity = 113/241 (46.89%), Postives = 139/241 (57.68%), Query Frame = 0


Query: 1   MEFTVHSISRPNLPLPLSXXXXXXXXXXXLTPYPHTRTKSTASVLPPLLLRSDLNLTFKS 60
           ME T  S+S   LP P              +   +    S         L     +  K+
Sbjct: 1   MEVTAQSLSYAKLPKPSINFSSPPSLPFFHSKASYAGFNSVTFQSSKSFLTQLKGVGIKT 60

Query: 61  RGRSLLQPPRASQSEFEPQSSSVRWLLVPVGDGDWKHIGSKVEMPDAFEIVSNEVTVGRL 120
           R    +    AS++E  P   + RWLL PVGDGD +HIGSKV+MPDAFEIVSNEVTVGR+
Sbjct: 61  RQLKNVGAINASEAESPPTDVAERWLLEPVGDGDSRHIGSKVKMPDAFEIVSNEVTVGRV 120

Query: 121 PEKADIAIPVATELVDCIVPLTSLRFSEMKTVSAVHARIKKQEDRLLVIDLDSTNGTFID 180
           PEKA+I IP+A                   TVS +HARI+K++  LLV DLDSTNGTFID
Sbjct: 121 PEKANIVIPIA-------------------TVSGLHARIQKKDGNLLVTDLDSTNGTFID 180

Query: 181 DKRLKPGVVAAVSSGNCISFGDIHLAMFQVSKLKTDKAASKIQESEDSI------GNSET 236
           DKRL+PGV A V  GN I FGDIHLAMF+ +KL+  +AA+K +ESED +       NSET
Sbjct: 181 DKRLRPGVPATVLPGNYIIFGDIHLAMFRATKLENVEAATKAEESEDKVETDSQTENSET 222

The following BLAST results are available for this feature:

BLAST of Carg13968-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532653.1	4.0e-102	85.96	uncharacterized protein LOC111794752 [Cucurbita pepo subsp. pepo]	[more]
XP_022996302.1	2.6e-101	85.53	uncharacterized protein LOC111491570 [Cucurbita maxima]	[more]
XP_022957686.1	2.2e-100	85.11	uncharacterized protein LOC111459151 [Cucurbita moschata]	[more]
XP_016900711.1	4.6e-58	66.50	PREDICTED: uncharacterized protein LOC103491680 isoform X1 [Cucumis melo]	[more]
XP_004149650.1	3.9e-57	70.27	PREDICTED: uncharacterized protein LOC101219513 isoform X1 [Cucumis sativus] >KG...	[more]

BLAST of Carg13968-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21530.1	1.2e-33	49.71	SMAD/FHA domain-containing protein	[more]

BLAST of Carg13968-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13968-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DXK3\|A0A1S4DXK3_CUCME	3.0e-58	66.50	uncharacterized protein LOC103491680 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KX03\|A0A0A0KX03_CUCSA	2.6e-57	70.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269160 PE=4 SV=1	[more]
tr\|A0A1S4DXL0\|A0A1S4DXL0_CUCME	1.3e-45	64.33	uncharacterized protein LOC103491680 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2C9VB27\|A0A2C9VB27_MANES	5.0e-45	47.64	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G111800 PE=4 SV=...	[more]
tr\|A0A2P4L118\|A0A2P4L118_QUESU	8.0e-43	46.89	Zeaxanthin epoxidase, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_40179 PE=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR008984	SMAD_FHA_dom_sf
IPR000253	FHA_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13968	Carg13968	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13968-RA	Carg13968-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13968-RA.three_prime_UTR.1	Carg13968-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13968-RA.CDS.5	Carg13968-RA.CDS.5	CDS
Carg13968-RA.CDS.4	Carg13968-RA.CDS.4	CDS
Carg13968-RA.CDS.3	Carg13968-RA.CDS.3	CDS
Carg13968-RA.CDS.2	Carg13968-RA.CDS.2	CDS
Carg13968-RA.CDS.1	Carg13968-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13968-RA.exon.5	Carg13968-RA.exon.5	exon
Carg13968-RA.exon.4	Carg13968-RA.exon.4	exon
Carg13968-RA.exon.3	Carg13968-RA.exon.3	exon
Carg13968-RA.exon.2	Carg13968-RA.exon.2	exon
Carg13968-RA.exon.1	Carg13968-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000253	Forkhead-associated (FHA) domain	SMART	SM00240	FHA_2	coord: 114..184 e-value: 4.5E-8 score: 42.8
IPR000253	Forkhead-associated (FHA) domain	PFAM	PF00498	FHA	coord: 115..201 e-value: 5.7E-13 score: 48.9
IPR000253	Forkhead-associated (FHA) domain	PROSITE	PS50006	FHA_DOMAIN	coord: 115..184 score: 13.189
IPR000253	Forkhead-associated (FHA) domain	CDD	cd00060	FHA	coord: 112..208 e-value: 5.78727E-13 score: 61.2482
None	No IPR available	GENE3D	G3DSA:2.60.200.20		coord: 97..230 e-value: 5.0E-18 score: 66.9
None	No IPR available	PANTHER	PTHR23308:SF29	SUBFAMILY NOT NAMED	coord: 72..227
None	No IPR available	PANTHER	PTHR23308	NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1	coord: 72..227
IPR008984	SMAD/FHA domain superfamily	SUPERFAMILY	SSF49879	SMAD/FHA domain	coord: 75..208