Carg26186 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26186
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MND1-interacting protein 1
Location	Cucurbita_argyrosperma_scaffold_219 : 52570 .. 52856 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTTGGAGACGATAAAAGGGATGAAGTGATTTGTAAATCTCTTGCATCAGATTAAAGAAGCTCGAGAGACAAGTGAAGGAGCGGAAGATTGGGCGCATCAAAAAGCAATGCAAAGCTGCTAGGAAATTGAGTCATGATCTCACCGAGCTTAAAACGTTTGAGGATGGAAAGGGAAGAGACGCAACGCCTGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGA

mRNA sequence

ATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTTGGAGACGATAAAAGGGATGAAAAGCTCGAGAGACAAGTGAAGGAGCGGAAGATTGGGCGCATCAAAAAGCAATGCAAAGCTGCTAGGAAATTGAGTCATGATCTCACCGAGCTTAAAACGTTTGAGGATGGAAAGGGAAGAGACGCAACGCCTGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGA

Coding sequence (CDS)

ATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTTGGAGACGATAAAAGGGATGAAAAGCTCGAGAGACAAGTGAAGGAGCGGAAGATTGGGCGCATCAAAAAGCAATGCAAAGCTGCTAGGAAATTGAGTCATGATCTCACCGAGCTTAAAACGTTTGAGGATGGAAAGGGAAGAGACGCAACGCCTGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGA

Protein sequence

MLNKFRDLKIYENLDFVGDDKRDEKLERQVKERKIGRIKKQCKAARKLSHDLTELKTFEDGKGRDATPEKWQTDFGGHNNETAI

Homology

[Close]

BLAST of Carg26186 vs. NCBI nr
Match: XP_022923356.1 (MND1-interacting protein 1 [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 8.8e-12
Identity = 46/67 (68.66%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 58
           MLNKFRDLKIYENLDFV DDK+DE          +LERQVKERK    +K  +AARKLSH
Sbjct: 405 MLNKFRDLKIYENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSH 464

[Close]

BLAST of Carg26186 vs. NCBI nr
Match: XP_023007713.1 (MND1-interacting protein 1-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 8.8e-12
Identity = 46/67 (68.66%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 58
           MLNKFRDLKIYENLDFV DDK+DE          +LERQVKERK    +K  +AARKLSH
Sbjct: 400 MLNKFRDLKIYENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSH 459

[Close]

BLAST of Carg26186 vs. NCBI nr
Match: XP_023552320.1 (MND1-interacting protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 8.8e-12
Identity = 46/67 (68.66%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 58
           MLNKFRDLKIYENLDFV DDK+DE          +LERQVKERK    +K  +AARKLSH
Sbjct: 398 MLNKFRDLKIYENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSH 457

[Close]

BLAST of Carg26186 vs. NCBI nr
Match: XP_022961800.1 (MND1-interacting protein 1-like [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           MLNKFRDLK+YENLDFV +D++DE          +LERQVKERK    +K  +AA+KLSH
Sbjct: 387 MLNKFRDLKLYENLDFVAEDQKDEVIVNLLHQIKELERQVKERKEWAHEKAMQAAKKLSH 446

[Close]

BLAST of Carg26186 vs. NCBI nr
Match: XP_022145335.1 (MND1-interacting protein 1 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           ML+KFRDLK+YENLDFV +D++DE          +LERQVKERK    +K  +AARKLSH
Sbjct: 373 MLSKFRDLKLYENLDFVAEDQKDEVIVNLLHQIKELERQVKERKEWAHQKAMQAARKLSH 432

[Close]

BLAST of Carg26186 vs. TAIR10
Match: AT1G32530.1 (RING/U-box superfamily protein)

HSP 1 Score: 43.1 bits (100), Expect = 9.7e-05
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRD----------EKLERQVKERKIGRIKKQCKAARKLSH 58
           +L KFRDL + +NL+ VG D +D          +  E++VKERK    K   +AA+K+S 
Sbjct: 346 VLEKFRDLNLDDNLESVGVDDKDCVIVDLLHQVKDFEKKVKERKEWAQKNAMQAAQKVSE 405

[Close]

BLAST of Carg26186 vs. TrEMBL
Match: tr|A0A1S3BJQ6|A0A1S3BJQ6_CUCME (MND1-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103490797 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.9e-09
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           ML+KFRDLK+YENLDFV +D++DE          +LERQVKERK    +K  +AARKLS+
Sbjct: 402 MLSKFRDLKLYENLDFVAEDQKDEVIVNLLQQIKELERQVKERKEWAHQKAMQAARKLSN 461

[Close]

BLAST of Carg26186 vs. TrEMBL
Match: tr|A0A0A0L411|A0A0A0L411_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011800 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.9e-09
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           ML+KFRDLK+YENLDFV +D++DE          +LERQVKERK    +K  +AARKLS+
Sbjct: 179 MLSKFRDLKLYENLDFVAEDQKDEVIVNLLQQIKELERQVKERKEWAHQKAMQAARKLSN 238

[Close]

BLAST of Carg26186 vs. TrEMBL
Match: tr|A0A1Q3BJU6|A0A1Q3BJU6_CEPFO (Zf-C3HC4_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_11637 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-06
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           +L+K RDL I ENL+FVG+D++DE           LERQVKERK    +K  +AARKLS+
Sbjct: 357 VLSKLRDLNIDENLEFVGEDQKDEMIVALLHQIKDLERQVKERKDWAHQKAMQAARKLSN 416

[Close]

BLAST of Carg26186 vs. TrEMBL
Match: tr|A0A2P6P9X8|A0A2P6P9X8_ROSCH (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0209211 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           +L+KFRDL + ENL+ VG+D+++E          +LE+QVKERK    +K  +AA+KLSH
Sbjct: 435 VLSKFRDLNLDENLELVGEDQKNEVIVTLLHQVKELEKQVKERKEWAHQKAMQAAKKLSH 494

[Close]

BLAST of Carg26186 vs. TrEMBL
Match: tr|A0A1S2YS21|A0A1S2YS21_CICAR (MND1-interacting protein 1 OS=Cicer arietinum OX=3827 GN=LOC101514958 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 58
           +LNKFRDL + ENL+FV +D++DE           LE+Q KERK     K  +AARKLS 
Sbjct: 372 VLNKFRDLNLDENLEFVAEDQKDEVIVTLFHQIKDLEKQAKERKEWAHLKAMQAARKLSS 431

The following BLAST results are available for this feature:

BLAST of Carg26186 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923356.1	8.8e-12	68.66	MND1-interacting protein 1 [Cucurbita moschata]	[more]
XP_023007713.1	8.8e-12	68.66	MND1-interacting protein 1-like [Cucurbita maxima]	[more]
XP_023552320.1	8.8e-12	68.66	MND1-interacting protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022961800.1	1.1e-09	62.12	MND1-interacting protein 1-like [Cucurbita moschata]	[more]
XP_022145335.1	1.8e-09	62.12	MND1-interacting protein 1 [Momordica charantia]	[more]

BLAST of Carg26186 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32530.1	9.7e-05	41.79	RING/U-box superfamily protein	[more]

BLAST of Carg26186 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26186 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJQ6\|A0A1S3BJQ6_CUCME	7.9e-09	60.61	MND1-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103490797 PE=4 SV=1	[more]
tr\|A0A0A0L411\|A0A0A0L411_CUCSA	7.9e-09	60.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011800 PE=4 SV=1	[more]
tr\|A0A1Q3BJU6\|A0A1Q3BJU6_CEPFO	3.7e-06	56.06	Zf-C3HC4_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_...	[more]
tr\|A0A2P6P9X8\|A0A2P6P9X8_ROSCH	1.1e-05	51.52	Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]
tr\|A0A1S2YS21\|A0A1S2YS21_CICAR	1.1e-05	53.73	MND1-interacting protein 1 OS=Cicer arietinum OX=3827 GN=LOC101514958 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26186-RA	Carg26186-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..84

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26186	Cucumber (Gy14) v2	carcgybB0503
Carg26186	Cucurbita maxima (Rimu)	carcmaB0697
Carg26186	Cucurbita moschata (Rifu)	carcmoB0677
Carg26186	Cucurbita pepo (Zucchini)	carcpeB0702
Carg26186	Wild cucumber (PI 183967)	carcpiB0534
Carg26186	Cucumber (Chinese Long) v2	carcuB0526
Carg26186	Cucumber (Chinese Long) v3	carcucB0532
Carg26186	Bottle gourd (USVL1VR-Ls)	carlsiB451
Carg26186	Melon (DHL92) v3.5.1	carmeB0503
Carg26186	Melon (DHL92) v3.6.1	carmedB0508
Carg26186	Watermelon (Charleston Gray)	carwcgB0487
Carg26186	Watermelon (97103) v1	carwmB0497
Carg26186	Watermelon (97103) v2	carwmbB0524
Carg26186	Wax gourd	carwgoB0606