Carg26186-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26186-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MND1-interacting protein 1
Location	Cucurbita_argyrosperma_scaffold_219 : 52570 .. 52856 (-)
Sequence length	255

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTTGGAGACGATAAAAGGGATGAAGTGATTTGTAAATCTCTTGCATCAGATTAAAGAAGCTCGAGAGACAAGTGAAGGAGCGGAAGATTGGGCGCATCAAAAAGCAATGCAAAGCTGCTAGGAAATTGAGTCATGATCTCACCGAGCTTAAAACGTTTGAGGATGGAAAGGGAAGAGACGCAACGCCTGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGA

mRNA sequence

ATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTTGGAGACGATAAAAGGGATGAAAAGCTCGAGAGACAAGTGAAGGAGCGGAAGATTGGGCGCATCAAAAAGCAATGCAAAGCTGCTAGGAAATTGAGTCATGATCTCACCGAGCTTAAAACGTTTGAGGATGGAAAGGGAAGAGACGCAACGCCTGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGA

Coding sequence (CDS)

ATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTTGGAGACGATAAAAGGGATGAAAAGCTCGAGAGACAAGTGAAGGAGCGGAAGATTGGGCGCATCAAAAAGCAATGCAAAGCTGCTAGGAAATTGAGTCATGATCTCACCGAGCTTAAAACGTTTGAGGATGGAAAGGGAAGAGACGCAACGCCTGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGA

Protein sequence

MLNKFRDLKIYENLDFVGDDKRDEKLERQVKERKIGRIKKQCKAARKLSHDLTELKTFEDGKGRDATPEKWQTDFGGHNNETAI

Homology

[Close]

BLAST of Carg26186-RA vs. NCBI nr
Match: XP_022923356.1 (MND1-interacting protein 1 [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 8.8e-12
Identity = 46/67 (68.66%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 58
           MLNKFRDLKIYENLDFV DDK+DE          +LERQVKERK    +K  +AARKLSH
Sbjct: 405 MLNKFRDLKIYENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSH 464

[Close]

BLAST of Carg26186-RA vs. NCBI nr
Match: XP_023007713.1 (MND1-interacting protein 1-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 8.8e-12
Identity = 46/67 (68.66%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 58
           MLNKFRDLKIYENLDFV DDK+DE          +LERQVKERK    +K  +AARKLSH
Sbjct: 400 MLNKFRDLKIYENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSH 459

[Close]

BLAST of Carg26186-RA vs. NCBI nr
Match: XP_023552320.1 (MND1-interacting protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 8.8e-12
Identity = 46/67 (68.66%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 58
           MLNKFRDLKIYENLDFV DDK+DE          +LERQVKERK    +K  +AARKLSH
Sbjct: 398 MLNKFRDLKIYENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSH 457

[Close]

BLAST of Carg26186-RA vs. NCBI nr
Match: XP_022961800.1 (MND1-interacting protein 1-like [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           MLNKFRDLK+YENLDFV +D++DE          +LERQVKERK    +K  +AA+KLSH
Sbjct: 387 MLNKFRDLKLYENLDFVAEDQKDEVIVNLLHQIKELERQVKERKEWAHEKAMQAAKKLSH 446

[Close]

BLAST of Carg26186-RA vs. NCBI nr
Match: XP_022145335.1 (MND1-interacting protein 1 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           ML+KFRDLK+YENLDFV +D++DE          +LERQVKERK    +K  +AARKLSH
Sbjct: 373 MLSKFRDLKLYENLDFVAEDQKDEVIVNLLHQIKELERQVKERKEWAHQKAMQAARKLSH 432

[Close]

BLAST of Carg26186-RA vs. TAIR10
Match: AT1G32530.1 (RING/U-box superfamily protein)

HSP 1 Score: 43.1 bits (100), Expect = 9.7e-05
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRD----------EKLERQVKERKIGRIKKQCKAARKLSH 58
           +L KFRDL + +NL+ VG D +D          +  E++VKERK    K   +AA+K+S 
Sbjct: 346 VLEKFRDLNLDDNLESVGVDDKDCVIVDLLHQVKDFEKKVKERKEWAQKNAMQAAQKVSE 405

[Close]

BLAST of Carg26186-RA vs. TrEMBL
Match: tr|A0A1S3BJQ6|A0A1S3BJQ6_CUCME (MND1-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103490797 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.9e-09
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           ML+KFRDLK+YENLDFV +D++DE          +LERQVKERK    +K  +AARKLS+
Sbjct: 402 MLSKFRDLKLYENLDFVAEDQKDEVIVNLLQQIKELERQVKERKEWAHQKAMQAARKLSN 461

[Close]

BLAST of Carg26186-RA vs. TrEMBL
Match: tr|A0A0A0L411|A0A0A0L411_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011800 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.9e-09
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           ML+KFRDLK+YENLDFV +D++DE          +LERQVKERK    +K  +AARKLS+
Sbjct: 179 MLSKFRDLKLYENLDFVAEDQKDEVIVNLLQQIKELERQVKERKEWAHQKAMQAARKLSN 238

[Close]

BLAST of Carg26186-RA vs. TrEMBL
Match: tr|A0A1Q3BJU6|A0A1Q3BJU6_CEPFO (Zf-C3HC4_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_11637 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-06
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           +L+K RDL I ENL+FVG+D++DE           LERQVKERK    +K  +AARKLS+
Sbjct: 357 VLSKLRDLNIDENLEFVGEDQKDEMIVALLHQIKDLERQVKERKDWAHQKAMQAARKLSN 416

[Close]

BLAST of Carg26186-RA vs. TrEMBL
Match: tr|A0A2P6P9X8|A0A2P6P9X8_ROSCH (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0209211 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 57
           +L+KFRDL + ENL+ VG+D+++E          +LE+QVKERK    +K  +AA+KLSH
Sbjct: 435 VLSKFRDLNLDENLELVGEDQKNEVIVTLLHQVKELEKQVKERKEWAHQKAMQAAKKLSH 494

[Close]

BLAST of Carg26186-RA vs. TrEMBL
Match: tr|A0A1S2YS21|A0A1S2YS21_CICAR (MND1-interacting protein 1 OS=Cicer arietinum OX=3827 GN=LOC101514958 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1   MLNKFRDLKIYENLDFVGDDKRDE----------KLERQVKERKIGRIKKQCKAARKLSH 58
           +LNKFRDL + ENL+FV +D++DE           LE+Q KERK     K  +AARKLS 
Sbjct: 372 VLNKFRDLNLDENLEFVAEDQKDEVIVTLFHQIKDLEKQAKERKEWAHLKAMQAARKLSS 431

The following BLAST results are available for this feature:

BLAST of Carg26186-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923356.1	8.8e-12	68.66	MND1-interacting protein 1 [Cucurbita moschata]	[more]
XP_023007713.1	8.8e-12	68.66	MND1-interacting protein 1-like [Cucurbita maxima]	[more]
XP_023552320.1	8.8e-12	68.66	MND1-interacting protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022961800.1	1.1e-09	62.12	MND1-interacting protein 1-like [Cucurbita moschata]	[more]
XP_022145335.1	1.8e-09	62.12	MND1-interacting protein 1 [Momordica charantia]	[more]

BLAST of Carg26186-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32530.1	9.7e-05	41.79	RING/U-box superfamily protein	[more]

BLAST of Carg26186-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26186-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJQ6\|A0A1S3BJQ6_CUCME	7.9e-09	60.61	MND1-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103490797 PE=4 SV=1	[more]
tr\|A0A0A0L411\|A0A0A0L411_CUCSA	7.9e-09	60.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011800 PE=4 SV=1	[more]
tr\|A0A1Q3BJU6\|A0A1Q3BJU6_CEPFO	3.7e-06	56.06	Zf-C3HC4_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_...	[more]
tr\|A0A2P6P9X8\|A0A2P6P9X8_ROSCH	1.1e-05	51.52	Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]
tr\|A0A1S2YS21\|A0A1S2YS21_CICAR	1.1e-05	53.73	MND1-interacting protein 1 OS=Cicer arietinum OX=3827 GN=LOC101514958 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26186	Carg26186	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26186-RA.CDS.2	Carg26186-RA.CDS.2	CDS
Carg26186-RA.CDS.1	Carg26186-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26186-RA.exon.2	Carg26186-RA.exon.2	exon
Carg26186-RA.exon.1	Carg26186-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26186-RA	Carg26186-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..84