Carg26184-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCAAAATTAATTGTAAATTCTGATAACAAAGAAACCAAGGGCATTACTTTTCCCCCATTGCTCTGAAGAACAATCACTCAAAACAAGAACGGACGACGATCTTGGAATTTTGAAGAGGGAAAAATCTCCGAAAATGGCAGGCAGGCTGAGCAATTTGGGTTCAAGGATCCTTGGCGGAAACGGAGTTGTTGCTCGCTCAATTGATTCGTCTCTTCGACGTCGCTCCGGCATGGGCCTTCCTGTTGGCAAACACATCGTCCCCAATAAACCCGTAAGCATTTCACCCTTCTACCTCCAAATTTGTTGCAAAATTAGTATCTCTTCGATGTAGATTATGTAGGACTTATGATCAGTTTTTCCATTTTTAGCTTCCTGTGAACGATGAACTGGTATGGGACAATGGAACGCCTTTTCCCGAGCCTTGTATTGATCGTATTGCTGATACGGTTGGGAAGGTATCTCGATTCTCTTGAGGATTTTGTATTTTCATTTCTCCGACAATTTGTATGTTTATTTTGTTTTTGTTCTTGTTCAGTACGAAGCCTTGGCTTGGTTATGTGGGGGATTGGGATTTTTTGCATCTCTGGGATTTCTGGCTGTGTGGAACGACAAAGCGTCTAAGATACCATTTGTAAGTTTACTGAACTAGACATCTTTTGTGGATCTTTTGTGGATCTTTTGTACTCCGTTCTCTGTTGGACTATTTGATATCTTACCTGCATTGGTGCTTGACTGTTGAAGGATACATTTGTTGTTTGTTGTTCATTACTGTAACGGCCAAGTCCACCGCTAGTAGATATTATCTTCCTTGGACTTTCCCTAAAGGTTTTAAAACACACGTCTCGTAGGGGAAGTTTCCACACCCTTATAATCAATGCTTCATTCTCCTCTCCAATTGATGGTGGGATCTCACAATCCACCCTCTTGGGGGCCAGCATCCTCGCTGGCACACCTCCCGGTGTCTGGCTCTGAAACCATTTGTAATGGTCTAAGCCCATTGCTGACAGATATTGTCCTGTTTGGGCTTTTCCTTCCGGGCTTCACCTTAAGGTTTTAAAATGCATATCTCGTAGAGAGAGGTTTCTACACCCTTAGGGATGCTTCGTTCTCCTCTCCAACTGATGTGGGATCTCACCATTACCGCGCATTTTGTGAAATATGGTGGTACTCAGTTCAGTGCATTATTTGGATTGAATTTTCTTTTCTCATGAAATCATATTGGGATAATTGTGCTATGTATACCGCATTTTATTTCTTTTGAGATGGGCTGAGCTAGAGAAATAACTCTTGAGATGTCTAACTTATAATTTGGTGCAAAGCAGAACAGTTTTCTAGATTAATTCTATCCTTCCCCACTATGAGTATCTGTGTAACATTCCTAGCCCAGTAGTAAGAGATTTTGCTAACCGTAGTACCAGGTCAAAGAGCTTGTTATGACTCGCGATTCGTTTTTTGTAGACCCTGGCCTGATGCAAGGCATCCTTATTGACGGGCACACCTTTTTCAATAACTGGAGTGTTATTCTCCCTTCTATGTCCAAGCAATGAGGTTCTGGGAGAGTAAGAAGGATAATAGGAGCATGTTAGAGGAGTTAGACAGCAGGGAAGGAAAGGGAGATGAGAGGTTATTATTAATATTGAATCATAGTCTTAACACTCTCGTTCCATTTGTGTGCGTGAAAATTAGTAAAAGGCTCAACAAGTGATCCTTAATATTAATTGAGAAAAGGAAATTACTAGCTTTTAAACTTATCTTTTGCTCTTATACCCTGTTGGTTGATCATTAGAACATCCAAAAGCTTAAACTGATAGGTTTTGGTATGTTCAATATTTATTCTTATTCTTAATCTGGAGAAGTTATCTTAGTTGGACGTTGGAGAAAGTCATCTTGAATCTAGCCTTTGGGAATAAAGGGCATGTTTATGGCTGGCCTAGCCTATTCCCTCAACATCATGTGGTTAGTTTGATTGGATAGAAATAGATCTTTTCTTGGGTTTATGAAAGACAACTCCAACTCAAAGGAATGACAACAAATATCTCCAATTGGGAAAAAGAGAAGCAAAACTATAAGAATGGAATTATTATGTAATTTACACCAAGAGCTAGGTAGATGACATTATCGAGGAATCTATAATAATCACAATCTTTCCCACAAAAGGCCTTTGATTTTTCCCCAACCAAGTAGACCAAAAGAAGGCCCGAACGTGGTGTTTCCATAGTAGCTCATTCTCTTTCTTAAAAGGATGACCCACGAGAGTATGAGAAAGAAGCACTTTTGGGTCTTTTGGAAGAGCCATGGTCCTGTTGAAGGAGGATAACATTTCGACCCAAATCCTTGATGCCAAAGAAGTGAGTAGGGGTATCCTCCTTTCATTATTTCAAGCACAACAAGTGAGTAGGGGTATCCTCCTACCATTTTTAAGAACAAGTGAGTAAGGGTAGGGGTATGAGGGATTTTCAAGAAACAACATTTCGTTGAAAATAATGAATATTCAAACAAAGAAAGGGGCGTGCAAAAATACTAGCTCCAAAAGATGGTCCATCCTCAACTACGGAGGAACTTACCAATCCATTGTGTCCTAACTGATAGTTATAAAGCTCTCTAGAAACTGAAGCCCACAAAGAGGTTGGAAATTTGACATTTTCTCACACTTCTTCCTCAGATCTCTCACAACCTTTGAAAATTCTACTACCACTCGAGCCATGTACCCCAGAAAACTGCAAAAGACGCATGCCAAATGACCCAAAAATCTCTAGTTTGCATTCCATAGAACTTCCTCCATTATTGAGCAACAATCCCTATTAGTACCTACAAGTCCTAAATGACCCAAAAAAATTGTCCAAAAGCGAGTTGGCAATCTGACAACTCTATAGAAAATTGTTAAGGTACTCAGAACCTGTCTACAATACATAAGGTCCTCCACTGAGTACTCAGCAAGAAGGAAGAAGGCTTCCGATGGCAATCCTCCCCTGTAATACCTGCCACACAAAGAATATTACCTTCTGGTGGATCTTAACCTTCCAGAGAGAGGCAAATAGAAGGGTACCAAGGGGGACGAAGACACAAAGGAGGTGAAAATAAGAAATGCAAGAGGAGGATTGTGCAAGGAGATGCAGCCACAAACAAAGGCTGATCGTAATTGTTGACAGATGCATTAGAAGCGACGTTAGGACACCCTATAGTTTCTCCAGCCTACAGCAAATTGGGCCTTCTTTTCTTTTTGACCCAGGATAGTCTCCTCTGAAAAAAGAGCCTGATTTAACAGATTTATCTGAGCTGCACACGCCCTCTTAGAAATCGAAGGGGACCCACTCTTTGCAGTTTGAAACACTTCACCTGGTTGCTAGAATACACTTGGCTACCTGTCTTAGACGTCAAAATCAACTTCTGAAAGAGCGTCAAAAAAGGAAGGTGAACTTCTGAAAGAGCGTCCAACTAAGATATAAACCATTTTTAGCTGATATTGACATATCTGATAGTTGGGAAAACAAAAGCTAAAATTGAACCCGCTACTGACCAACTCTTCCATTTTTCCAACTGTGAAGACACGAGATAAGAGAATGGAAGCAACTTTATTGAAAGTTTTTCCTGTATTCCTTTTTGCCCAAAAAAAAAAGTATTCTTTCACCCACAAACCTCACAGAAAGGGAATGTGATATCCCCACAGAGCCAATGGGTTATGAAAATAGACTCCCAATGGGCATTAATATGCACGAGGTCATCATTACGGAAGCCTCGAGAGAGGGTGCACCAAGTGGAGTCAAAATTTTTCACAAGATCCCCTAATTCCTCAAGAGTACGCTATTTCCCTTTAGAAGTTCTTTGGTTTCTCTTGAACCAGTCTCCAAAGATTGGCTGTCATGGCGTTGGACCATAAAACAAGAGCCTGCCCTTGAAAGGAGAGCCTTCCAAAAGCCGGTAAGGGGTGGTTTAACAATCTTTTGGGGACACTAGTCTAAGCCAAAAGAATGAAAGAGCTTTGATTTCGATGAACTAGCAGCCATGAAAGGGCCATTGCAAAGATACGTGAGGATGACTCTCTAAATTACTTTTTCACATGATGCATCAGGTAGTGCAAACTGGCATATTTGGGAGTTTCCTTTGGATCCAAGAACTAGTTTTCAATGTTCTTGAATAAAAGATCAAGGGAAAACTTTCATCTTCTTTGGAACCTTGGCCTTTCAAATCACACTGATTTGGAATTAATGAACAACGTGGGAATATCTACCTTCTAGAATCCTGCTGGGTGCTAGGCTGATCGTGGCTGATCAGGTTTTGGAGTCTAATTCAATATCAGACAGATTCCTTCTAAACTGCAATTTCTACGGGTGGGTGTCTTATGACCAGCAATGATTCATGGTGAAGTGCTTTGATTTCGCTACACTGTCAAGTCTTTGGAAGGAAAGTTTGAGAGGGCTACTACCTGTCAGCCCTCTCCCCAGAAAATTTCATCTTCTTAGGAGTGAAATTCCGAAGCTTTGTGAAAAAGGAGATGGATATATAGGCAAATGTTTTCAACTTGGATTATAGCTTAGCTACTTACGACATATGCTTTTGACTAAGAGGTCAGAAATTCAAATTAAGAGGTCAAAAGTTTAAATCTCTCCTTGCAAATATGCGAAAAAGAATATACGGGCAAGTGTTTCTTCCAAATATAGGTTCCACAGAGAATGTATTCTTGTTGTGGTTGTTTGTATAGCCTGGCCTTGTATACTTTATGGTGTTTTTCAGTCGTTACGTTTACTTGACATTTGCATAGAAATCGAACTATTGGCCGTGTTTCAACTCTTTGAAGCCTTGATGTTTTATTTTCTGGATGAATTTAGCATTGATAAGATGATTGATAATAAACTTGATCCTCCTTTTAATCAGGCGCCGAAAGTATATCCATATGACAACCTAAGAGTGGAGCTTGGTGGAGAACCAGAAGCTTAGATAGGCGGCCTCACGCTGAATGGACCCTTTTGGTACTGTTTCTTTTCAGATACAAATCGTTGTTGAATTATATGCCTTTGGAATTTGCTTTGCATCAAAATAAATGGATTTTGTTGCCTGTTCTGAAATCTCTATTTGGCATTGTGTAAATCACGTTCTACACTTTGATTCTTATAACGAGGTTCTCAAGACTTCTTGCCATCAATGATGGATAATGAATGATTCAATAAGTTATCATTTTGTGTTATATAACCATGTTCTAAGTAAACTAGAAACCGATTAAATTATAAATTTGGTCCTTAAACCATTGAAAATTGTCTCTTTTAGTTTTT CCAAAATTAATTGTAAATTCTGATAACAAAGAAACCAAGGGCATTACTTTTCCCCCATTGCTCTGAAGAACAATCACTCAAAACAAGAACGGACGACGATCTTGGAATTTTGAAGAGGGAAAAATCTCCGAAAATGGCAGGCAGGCTGAGCAATTTGGGTTCAAGGATCCTTGGCGGAAACGGAGTTGTTGCTCGCTCAATTGATTCGTCTCTTCGACGTCGCTCCGGCATGGGCCTTCCTGTTGGCAAACACATCGTCCCCAATAAACCCCTTCCTGTGAACGATGAACTGGTATGGGACAATGGAACGCCTTTTCCCGAGCCTTGTATTGATCGTATTGCTGATACGGTTGGGAAGTACGAAGCCTTGGCTTGGTTATGTGGGGGATTGGGATTTTTTGCATCTCTGGGATTTCTGGCTGTGTGGAACGACAAAGCGTCTAAGATACCATTTGCGCCGAAAGTATATCCATATGACAACCTAAGAGTGGAGCTTGGTGGAGAACCAGAAGCTTAGATAGGCGGCCTCACGCTGAATGGACCCTTTTGGTACTGTTTCTTTTCAGATACAAATCGTTGTTGAATTATATGCCTTTGGAATTTGCTTTGCATCAAAATAAATGGATTTTGTTGCCTGTTCTGAAATCTCTATTTGGCATTGTGTAAATCACGTTCTACACTTTGATTCTTATAACGAGGTTCTCAAGACTTCTTGCCATCAATGATGGATAATGAATGATTCAATAAGTTATCATTTTGTGTTATATAACCATGTTCTAAGTAAACTAGAAACCGATTAAATTATAAATTTGGTCCTTAAACCATTGAAAATTGTCTCTTTTAGTTTTT ATGGCAGGCAGGCTGAGCAATTTGGGTTCAAGGATCCTTGGCGGAAACGGAGTTGTTGCTCGCTCAATTGATTCGTCTCTTCGACGTCGCTCCGGCATGGGCCTTCCTGTTGGCAAACACATCGTCCCCAATAAACCCCTTCCTGTGAACGATGAACTGGTATGGGACAATGGAACGCCTTTTCCCGAGCCTTGTATTGATCGTATTGCTGATACGGTTGGGAAGTACGAAGCCTTGGCTTGGTTATGTGGGGGATTGGGATTTTTTGCATCTCTGGGATTTCTGGCTGTGTGGAACGACAAAGCGTCTAAGATACCATTTGCGCCGAAAGTATATCCATATGACAACCTAAGAGTGGAGCTTGGTGGAGAACCAGAAGCTTAG MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTPFPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVELGGEPEA
BLAST of Carg26184-RA vs. NCBI nr
Match: XP_022923346.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Cucurbita moschata]) HSP 1 Score: 267.3 bits (682), Expect = 2.6e-68 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of Carg26184-RA vs. NCBI nr
Match: XP_022965223.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Cucurbita maxima]) HSP 1 Score: 262.3 bits (669), Expect = 8.5e-67 Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 0
BLAST of Carg26184-RA vs. NCBI nr
Match: XP_023553279.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 258.5 bits (659), Expect = 1.2e-65 Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 0
BLAST of Carg26184-RA vs. NCBI nr
Match: XP_004147198.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Cucumis sativus] >XP_008448866.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Cucumis melo] >KGN55877.1 hypothetical protein Csa_3G021140 [Cucumis sativus]) HSP 1 Score: 251.1 bits (640), Expect = 2.0e-63 Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0
BLAST of Carg26184-RA vs. NCBI nr
Match: XP_022950674.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial-like [Cucurbita moschata] >XP_023538880.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 248.4 bits (633), Expect = 1.3e-62 Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 0
BLAST of Carg26184-RA vs. TAIR10
Match: AT5G47570.1 (unknown protein) HSP 1 Score: 224.9 bits (572), Expect = 2.7e-59 Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 0
BLAST of Carg26184-RA vs. Swiss-Prot
Match: sp|Q9FGK0|NDUB8_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g47570 PE=2 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 4.9e-58 Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 0
BLAST of Carg26184-RA vs. TrEMBL
Match: tr|A0A1S3BK37|A0A1S3BK37_CUCME (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490900 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 1.3e-63 Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0
BLAST of Carg26184-RA vs. TrEMBL
Match: tr|A0A0A0L5J8|A0A0A0L5J8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G021140 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 1.3e-63 Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0
BLAST of Carg26184-RA vs. TrEMBL
Match: tr|W9R278|W9R278_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019050 PE=4 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 1.2e-61 Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 0
BLAST of Carg26184-RA vs. TrEMBL
Match: tr|A0A1Q3DBK7|A0A1Q3DBK7_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_33328 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 1.6e-61 Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 0
BLAST of Carg26184-RA vs. TrEMBL
Match: tr|A0A2C9WL26|A0A2C9WL26_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G079000 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 3.5e-61 Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|