Carg19495-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAACCCTAATTTACCGCCACGCCTTTCCTTCCCATTACTAGCCACTGTATCCCGACTCTCCCCACGCCGCTGACCTCTTCTGCCTGACGCCATCTCAACGGCTGCCGCCGCACGTTGCAGTCTCAGCCTCCCGGCGATCTCACCGCCGCTCCCTCCGTTTCACAGTCTTTCGCCTCACCGAGTAATCAGCGTTACTTGCTTTGTTGTTGTTTTTTTTATTCTTAAATATTTATTCTTCCAAATTAGGGTGTTCCGAACAAGGTTAATGTGCCGTATCTGAAATTCCGATCAATTTTACTTCGGCACTTTCTCATACATGCTTCTTCTAACCGGAATTTACTTTTTTTTTATTGCGATTCGTCGGAACGGAAATGGATCCTTAGTTTTGATTCATTTCTGTCTTGTTTGTATTCTGTGGAATTTTATCCGTTTTTCTTGATTAGTTTGTGATTTGCACTTTGCAATTTGGATCATTTGGCCGAATGTGATGCTGTTTCTATAACTAGCCGGTGATTAAGGTGTAGATAATGATAAGTGATAACTAAGGTGAATGGCGTCATTTTCCGATTTCCGACTGATTAGATTGAATATTTCTCACCTTTTCCTTTTCTGTGATGGATTTTTCTTTCTCCGGCGAAGGTTTTTTTTGCTGATGGATTTTGTGCTGCTTCCTAGGTGATAACAGAGCAACGGACTGTAACAACGCAAATTGCTTATGAAAACTCTATTCTTAAGCAAGTCCTGCTGCACAAAATACAGTCCCCAACCTGTACCGTTTGGAATTTCATCGAGCTTGATCTTCTGTCTGTAGAAGCTTGTTGGCAGTAATTCAAACTCATTTTCGCAGATCGTTCTACTTCTGTTCCTATTGTTTGGAGTATTTTTGGATCACAGCTGATTCTACAAGAGAGAGTCGAAAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTATGAACCTCTTTTCTTTCCTTTATTTTTTTCAAAATCTATGGTCGATTCTCTCTGAATTTGGATGCATTTTATTGATTTGCCGAATTCCGTGGTTCGAAACCATTAGTCCCTTTCCCAATATGAGCATAGCTTAACGGTTAAAGGATATCATGTTAAGCCCAAGCCTGCCGCTAGCCGATATTGAACTCTTTGAACTTTCCCTTTTGAGCTTCCCCTCAAGATTTTAAAACGCGTCCACTATGGAGAGGTTTCCACACCCTTGTAAGAAATGTTTCGTTCCCCTCTCCAACCAATGTGGGATCTCATAATCCACCCCCTTGGAGGTTAGCGTCCTTGCTCTAACACACTGCCCAGTGTCTGATTTTGATACCATTTGTAATAGCCTAAGTCCACCGCTAACAAATATTGTCCTCTTTGAGATTTCCCTACTGGGCTTCCCCTCAAGGTTTTAAAATGCATCTACTATGGAGAAGTTTCCACACTCTTGTAAGAAATGTTTCATCCCCCTCTCCAACCAATGTAGGATCTCACAATCCACCTCCTTGGAGGTCAGTGTGACACACCGCCCAGTGTCTGGCTCTGATACCATTTGTAATAGCCTAAGCCTACTGCTAACAGATATTGTTCTCTTTGAGATTTCCCTACTGGACTTCCTCTCAAGGTTTTAAAACGTGTCTACTAGGGAGAGATTTCCACACCCTTGTAAGGAATGTTTCGTTCCCCTCTCCAACCAAGGTGGGATCTCATAATCCACCCCCTTGGAGGTCAGCGTCCTCACTGACACATTACCCGGTGTCTGGCTCTGATACCATTTGTAATAGTCTAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGATTTCTCTGTTGGCCTTCCCCTCAAGGTTTTAAAATGCGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCTCCTCTTCAACCAATGTGAGATCTCACACATCAACCTCTACCTTTTTTTTTTTTTTCCTTCGAACTAGTTCAAATTTCCACACCCACACCAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTTAGTCCCTTTTAATTGCATAGCTTGATTTATTGTTTTTTACAATTGCAAGTGAAGGCGCCATAAATGAATAAATTCATAGCATCAAAGACATTTGGCAGAAAATTCTTGCTGTTACTATTTCAAAACTTTACGTCTTTGTGTTCATGCTTCTGATTTTTTCTTATCTGTTTGTTGCTGCCTTCTTGATGAGTGTTTGGATTTTGGATGCGGGGTTAGCATATGAATCAATTGTTCTGCTAAAACTTCTTAACCACACTACTTGATTACGACTTGTAGTTAGAATCAAGTGGAGATTTTGTAATTGCTTTGCTCTGAGGTTTTTATGCCCCACTCCTTTTGTCAATCTATGAACATGTGGAAGAACCCTAAGATAGGGTGATTGGGGGCGTGAAGTCGGGCTTCAGCGTGTGTCTCGCTTCCTAAGCCCAACAGCCCCGACCCTCTGTTTGACAATCCAAGTTCGAGAAACCAACCGGCTCAAACAACATCCTACTATTCAACCCCTCCTTTGCTCACTATTTCGACCCAGGCTTCCTAAACTTGTGCCCCCAAATACAGAACCTGTGAACCCAAATGATCCATTAGATTTTGGGAAGAGAAAATGAACTTATAGTTGTGTTTCCTTCTGTGTGTGAACGTTATTGGTTTTTGCTTTATGTTTGTAGCCTTATATTTACATGTCAAGGGTATGCCTCTCTTGCTCTTGTATTCAGAAATTCGAGAGCACGATATAATAATTTCGTTTTCTTCCTTTGTTTCGGCCTTATGTCATATAAGGGTTCGGTGCGTTTTACGATTATTTACGATGATTTTGTCATGCTATCAATTTTCAATTTTGGAGTATTAGCCGTAATGTGCTGGTGCTTATAGGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCACAAGCCGTGGATTGATGAGTATTCTTGACTGA AAACCCTAATTTACCGCCACGCCTTTCCTTCCCATTACTAGCCACTGTATCCCGACTCTCCCCACGCCGCTGACCTCTTCTGCCTGACGCCATCTCAACGGCTGCCGCCGCACGTTGCAGTCTCAGCCTCCCGGCGATCTCACCGCCGCTCCCTCCGTTTCACAGTCTTTCGCCTCACCGAGTGATAACAGAGCAACGGACTGTAACAACGCAAATTGCTTATGAAAACTCTATTCTTAAGCAAGTCCTGCTGCACAAAATACAGTCCCCAACCTGTACCGTTTGGAATTTCATCGAGCTTGATCTTCTGTCTGTAGAAGCTTGTTGGCAGTAATTCAAACTCATTTTCGCAGATCGTTCTACTTCTGTTCCTATTGTTTGGAGTATTTTTGGATCACAGCTGATTCTACAAGAGAGAGTCGAAAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCACAAGCCGTGGATTGATGAGTATTCTTGACTGA ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCACAAGCCGTGGATTGATGAGTATTCTTGACTGA MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRGLMSILD
BLAST of Carg19495-RA vs. NCBI nr
Match: XP_022923524.1 (uncharacterized protein LOC111431195 [Cucurbita moschata]) HSP 1 Score: 208.0 bits (528), Expect = 1.7e-50 Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0
BLAST of Carg19495-RA vs. NCBI nr
Match: XP_022965371.1 (uncharacterized protein LOC111465250 [Cucurbita maxima]) HSP 1 Score: 205.3 bits (521), Expect = 1.1e-49 Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 0
BLAST of Carg19495-RA vs. NCBI nr
Match: XP_023553194.1 (uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 205.3 bits (521), Expect = 1.1e-49 Identity = 101/105 (96.19%), Postives = 101/105 (96.19%), Query Frame = 0
BLAST of Carg19495-RA vs. NCBI nr
Match: XP_004146126.1 (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus] >KGN55688.1 hypothetical protein Csa_3G005030 [Cucumis sativus]) HSP 1 Score: 200.7 bits (509), Expect = 2.6e-48 Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 0
BLAST of Carg19495-RA vs. NCBI nr
Match: XP_022145425.1 (uncharacterized protein LOC111014872 [Momordica charantia]) HSP 1 Score: 198.7 bits (504), Expect = 1.0e-47 Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = 0
BLAST of Carg19495-RA vs. TAIR10
Match: AT4G31460.1 (Ribosomal L28 family) HSP 1 Score: 173.3 bits (438), Expect = 8.2e-44 Identity = 79/105 (75.24%), Postives = 92/105 (87.62%), Query Frame = 0
BLAST of Carg19495-RA vs. Swiss-Prot
Match: sp|P36525|RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL24 PE=1 SV=2) HSP 1 Score: 57.8 bits (138), Expect = 9.1e-08 Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 0
BLAST of Carg19495-RA vs. Swiss-Prot
Match: sp|B6IW31|RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmB PE=3 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 1.9e-05 Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 0
BLAST of Carg19495-RA vs. Swiss-Prot
Match: sp|B4SNN0|RL28_STRM5 (50S ribosomal protein L28 OS=Stenotrophomonas maltophilia (strain R551-3) OX=391008 GN=rpmB PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05 Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 0
BLAST of Carg19495-RA vs. Swiss-Prot
Match: sp|B2FNE3|RL28_STRMK (50S ribosomal protein L28 OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=rpmB PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05 Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 0
BLAST of Carg19495-RA vs. Swiss-Prot
Match: sp|A0L5U1|RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rpmB PE=3 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 7.2e-05 Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 0
BLAST of Carg19495-RA vs. TrEMBL
Match: tr|A0A0A0L1P8|A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 1.8e-48 Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 0
BLAST of Carg19495-RA vs. TrEMBL
Match: tr|A0A2P4IE11|A0A2P4IE11_QUESU (54s ribosomal protein l24, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_63905 PE=3 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 3.7e-46 Identity = 90/105 (85.71%), Postives = 98/105 (93.33%), Query Frame = 0
BLAST of Carg19495-RA vs. TrEMBL
Match: tr|A0A251IVW1|A0A251IVW1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G086700 PE=3 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 4.8e-46 Identity = 92/105 (87.62%), Postives = 98/105 (93.33%), Query Frame = 0
BLAST of Carg19495-RA vs. TrEMBL
Match: tr|A0A1S3BK21|A0A1S3BK21_CUCME (54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718 PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 6.2e-46 Identity = 93/105 (88.57%), Postives = 98/105 (93.33%), Query Frame = 0
BLAST of Carg19495-RA vs. TrEMBL
Match: tr|A0A2P4JP27|A0A2P4JP27_QUESU (54s ribosomal protein l24, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_71970 PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 6.2e-46 Identity = 89/105 (84.76%), Postives = 99/105 (94.29%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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