Carg18440-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGAGAGTTCAAGCATTTGGTGCTCGTAAAGTTTAAGGAAGGAGCGGCGGTAGAAGAGATTCTCAAAGGCATGGAGAATCTCGTCTCTGAAGTCGAAGCTGTCAAATCCTTTGAGTGGTAATCTTCCCCACCTTTGTTAAAATATTAAAATTTCAAAGCTATTCTTTGGGTATTGGTTTCTTCAGTTTTGTTGGATGCTTTTTAGCTTGGTGTGAACCCAAGAGTGAAGCGAAGGAAGGGATAATGGCACCTCTTAGTACTCAGATTAAAATACTACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTCTAAGGCTCTCTCTAACTTTTCACCTACATTTCTAAAATGGAAATATTATATATAAAAATGTTACAAACCTCCGCTCTTGTTGGACCCAAAGTTTAAGTATTTTTATGGCTGGGATGGACAATCTTATGACATGATGTAGAATGTTTTGTTTTATGTAATTTTGTGATAATTATATAATTTAGTTTCAAGATGTGTTAAAATTAATCAGAGGGTAAACATGATTTTTTTTCATATGATTTATCGTGGAAGGAAGAAGAAAGATGAATGTTTTAAGGTGAAAACAGGGGACAGGAAATAGAGGGACCAGAGATGCTTACACAGGGCTTCACGCACGCCTTCTTGATGACATTCGAGAACAAGGAAGCTCATGCTGCGTTTGTCGGGCATCCCAAGCATGTTGAATTCTCTGCAACTTTCTCGGCAGCCATTGACAAGATTGTGCTGCTTGATTTCCCGGCTATTCGTACCAAGCCAGCTCCAACAGCTTGA ATGGGAGGAGAGTTCAAGCATTTGGTGCTCGTAAAGTTTAAGGAAGGAGCGGCGGTAGAAGAGATTCTCAAAGGCATGGAGAATCTCGTCTCTGAAGTCGAAGCTGTCAAATCCTTTGAGTGGGGACAGGAAATAGAGGGACCAGAGATGCTTACACAGGGCTTCACGCACGCCTTCTTGATGACATTCGAGAACAAGGAAGCTCATGCTGCGTTTGTCGGGCATCCCAAGCATGTTGAATTCTCTGCAACTTTCTCGGCAGCCATTGACAAGATTGTGCTGCTTGATTTCCCGGCTATTCGTACCAAGCCAGCTCCAACAGCTTGA ATGGGAGGAGAGTTCAAGCATTTGGTGCTCGTAAAGTTTAAGGAAGGAGCGGCGGTAGAAGAGATTCTCAAAGGCATGGAGAATCTCGTCTCTGAAGTCGAAGCTGTCAAATCCTTTGAGTGGGGACAGGAAATAGAGGGACCAGAGATGCTTACACAGGGCTTCACGCACGCCTTCTTGATGACATTCGAGAACAAGGAAGCTCATGCTGCGTTTGTCGGGCATCCCAAGCATGTTGAATTCTCTGCAACTTTCTCGGCAGCCATTGACAAGATTGTGCTGCTTGATTTCCCGGCTATTCGTACCAAGCCAGCTCCAACAGCTTGA MGGEFKHLVLVKFKEGAAVEEILKGMENLVSEVEAVKSFEWGQEIEGPEMLTQGFTHAFLMTFENKEAHAAFVGHPKHVEFSATFSAAIDKIVLLDFPAIRTKPAPTA
BLAST of Carg18440-RA vs. NCBI nr
Match: XP_022943456.1 (stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita moschata] >XP_023512321.1 stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 216.9 bits (551), Expect = 3.5e-53 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
BLAST of Carg18440-RA vs. NCBI nr
Match: XP_022986047.1 (stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita maxima]) HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52 Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0
BLAST of Carg18440-RA vs. NCBI nr
Match: XP_008458618.1 (PREDICTED: stress-response A/B barrel domain-containing protein At5g22580 [Cucumis melo] >XP_011657057.1 PREDICTED: uncharacterized protein At5g22580 [Cucumis sativus] >KGN46925.1 hypothetical protein Csa_6G151130 [Cucumis sativus]) HSP 1 Score: 200.7 bits (509), Expect = 2.6e-48 Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of Carg18440-RA vs. NCBI nr
Match: XP_022140579.1 (stress-response A/B barrel domain-containing protein At5g22580 [Momordica charantia]) HSP 1 Score: 200.7 bits (509), Expect = 2.6e-48 Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 0
BLAST of Carg18440-RA vs. NCBI nr
Match: XP_022958177.1 (stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita moschata]) HSP 1 Score: 196.4 bits (498), Expect = 4.9e-47 Identity = 96/108 (88.89%), Postives = 102/108 (94.44%), Query Frame = 0
BLAST of Carg18440-RA vs. TAIR10
Match: AT5G22580.1 (Stress responsive A/B Barrel Domain) HSP 1 Score: 142.5 bits (358), Expect = 1.5e-34 Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 0
BLAST of Carg18440-RA vs. TAIR10
Match: AT3G17210.1 (heat stable protein 1) HSP 1 Score: 94.7 bits (234), Expect = 3.6e-20 Identity = 43/98 (43.88%), Postives = 69/98 (70.41%), Query Frame = 0
BLAST of Carg18440-RA vs. Swiss-Prot
Match: sp|Q9FK81|Y5258_ARATH (Stress-response A/B barrel domain-containing protein At5g22580 OS=Arabidopsis thaliana OX=3702 GN=At5g22580 PE=1 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 2.7e-33 Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 0
BLAST of Carg18440-RA vs. Swiss-Prot
Match: sp|Q9LUV2|POP3_ARATH (Stress-response A/B barrel domain-containing protein HS1 OS=Arabidopsis thaliana OX=3702 GN=HS1 PE=1 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 6.5e-19 Identity = 43/98 (43.88%), Postives = 69/98 (70.41%), Query Frame = 0
BLAST of Carg18440-RA vs. Swiss-Prot
Match: sp|I6WU39|OLIAC_CANSA (Olivetolic acid cyclase OS=Cannabis sativa OX=3483 GN=OAC PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 4.0e-08 Identity = 31/95 (32.63%), Postives = 55/95 (57.89%), Query Frame = 0
BLAST of Carg18440-RA vs. TrEMBL
Match: tr|A0A1S3C8U9|A0A1S3C8U9_CUCME (stress-response A/B barrel domain-containing protein At5g22580 OS=Cucumis melo OX=3656 GN=LOC103497965 PE=4 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 1.7e-48 Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of Carg18440-RA vs. TrEMBL
Match: tr|A0A0A0KB18|A0A0A0KB18_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151130 PE=4 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 1.7e-48 Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of Carg18440-RA vs. TrEMBL
Match: tr|Q58A16|Q58A16_CUCME (Uncharacterized protein 7E10 (Fragment) OS=Cucumis melo OX=3656 GN=7E10 PE=2 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 1.4e-45 Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0
BLAST of Carg18440-RA vs. TrEMBL
Match: tr|A0A2P4LWL4|A0A2P4LWL4_QUESU (Stress-response a/b barrel domain-containing protein OS=Quercus suber OX=58331 GN=CFP56_53420 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 1.5e-36 Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = 0
BLAST of Carg18440-RA vs. TrEMBL
Match: tr|A0A2K2AWU0|A0A2K2AWU0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G187500v3 PE=4 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 2.6e-36 Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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