Carg18417-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTTATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAACAGCAGCAGCAGCAGCAGCAGCATCATGCCTAG ATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTTATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAACAGCAGCAGCAGCAGCAGCAGCATCATGCCTAG ATGAGCAAGAGGTCGAGAAGTAGCGAGCCGAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCGTCGGACATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGAGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTTATGTATGTGATGTTGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAATGTCTTCCTTGATTTCTTCAAGCACCAACAGCAGCAGCAGCAGCAGCAGCATCATGCCTAG MSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQQQHHA
BLAST of Carg18417-RA vs. NCBI nr
Match: KGN48041.1 (hypothetical protein Csa_6G425780 [Cucumis sativus]) HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17 Identity = 49/59 (83.05%), Postives = 49/59 (83.05%), Query Frame = 0
BLAST of Carg18417-RA vs. NCBI nr
Match: XP_022575922.1 (uncharacterized protein LOC111215947 [Brassica napus] >CDY08510.1 BnaA05g27460D [Brassica napus]) HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09 Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0
BLAST of Carg18417-RA vs. NCBI nr
Match: XP_010464878.1 (PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa]) HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09 Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 0
BLAST of Carg18417-RA vs. NCBI nr
Match: XP_006296745.1 (uncharacterized protein LOC17893207 [Capsella rubella] >EOA29643.1 hypothetical protein CARUB_v10014943mg [Capsella rubella]) HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09 Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 0
BLAST of Carg18417-RA vs. NCBI nr
Match: XP_006407430.1 (uncharacterized protein LOC18023255 [Eutrema salsugineum] >ESQ48883.1 hypothetical protein EUTSA_v10021790mg [Eutrema salsugineum]) HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09 Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 0
BLAST of Carg18417-RA vs. TAIR10
Match: AT3G11600.1 (unknown protein) HSP 1 Score: 68.6 bits (166), Expect = 2.7e-12 Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 0
BLAST of Carg18417-RA vs. TAIR10
Match: AT5G06270.1 (unknown protein) HSP 1 Score: 55.5 bits (132), Expect = 2.4e-08 Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 0
BLAST of Carg18417-RA vs. TAIR10
Match: AT3G52561.1 (unknown protein) HSP 1 Score: 43.9 bits (102), Expect = 7.2e-05 Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 0
BLAST of Carg18417-RA vs. TrEMBL
Match: tr|A0A0A0KJX5|A0A0A0KJX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 9.0e-18 Identity = 49/59 (83.05%), Postives = 49/59 (83.05%), Query Frame = 0
BLAST of Carg18417-RA vs. TrEMBL
Match: tr|A0A078F242|A0A078F242_BRANA (BnaA05g27460D protein OS=Brassica napus OX=3708 GN=BnaA05g27460D PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 6.9e-10 Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0
BLAST of Carg18417-RA vs. TrEMBL
Match: tr|A0A072U397|A0A072U397_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499448 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09 Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 0
BLAST of Carg18417-RA vs. TrEMBL
Match: tr|B7FH31|B7FH31_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09 Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 0
BLAST of Carg18417-RA vs. TrEMBL
Match: tr|R0HZX7|R0HZX7_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10014943mg PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09 Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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