Carg18414-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTTGCACGGTTACTCAAATAG ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTTGCACGGTTACTCAAATAG ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTTGCACGGTTACTCAAATAG MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLARLLK
BLAST of Carg18414-RA vs. NCBI nr
Match: XP_022943341.1 (uncharacterized protein LOC111448136 [Cucurbita moschata] >XP_022943342.1 uncharacterized protein LOC111448136 [Cucurbita moschata] >XP_023511908.1 uncharacterized protein LOC111776780 [Cucurbita pepo subsp. pepo] >XP_023511909.1 uncharacterized protein LOC111776780 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
BLAST of Carg18414-RA vs. NCBI nr
Match: XP_022986677.1 (uncharacterized protein LOC111484357 [Cucurbita maxima] >XP_022986678.1 uncharacterized protein LOC111484357 [Cucurbita maxima]) HSP 1 Score: 169.9 bits (429), Expect = 3.5e-39 Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0
BLAST of Carg18414-RA vs. NCBI nr
Match: XP_021278844.1 (uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao] >EOY33334.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao]) HSP 1 Score: 146.7 bits (369), Expect = 3.2e-32 Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0
BLAST of Carg18414-RA vs. NCBI nr
Match: XP_022152955.1 (uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncharacterized protein LOC111020571 [Momordica charantia]) HSP 1 Score: 146.0 bits (367), Expect = 5.4e-32 Identity = 68/80 (85.00%), Postives = 70/80 (87.50%), Query Frame = 0
BLAST of Carg18414-RA vs. NCBI nr
Match: XP_006362857.1 (PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum] >XP_015158697.1 PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum]) HSP 1 Score: 145.6 bits (366), Expect = 7.1e-32 Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0
BLAST of Carg18414-RA vs. TAIR10
Match: AT5G22210.1 (unknown protein) HSP 1 Score: 111.3 bits (277), Expect = 2.7e-25 Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 0
BLAST of Carg18414-RA vs. TrEMBL
Match: tr|A0A061GZN3|A0A061GZN3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 2.1e-32 Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0
BLAST of Carg18414-RA vs. TrEMBL
Match: tr|M1BQF4|M1BQF4_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102593640 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 4.7e-32 Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0
BLAST of Carg18414-RA vs. TrEMBL
Match: tr|A0A0V0GKC5|A0A0V0GKC5_SOLCH (Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Solanum chacoense OX=4108 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 4.7e-32 Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0
BLAST of Carg18414-RA vs. TrEMBL
Match: tr|A0A061GNT1|A0A061GNT1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038446 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 8.0e-32 Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0
BLAST of Carg18414-RA vs. TrEMBL
Match: tr|A0A0D2PQF0|A0A0D2PQF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G124000 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31 Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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