Carg08126-RA (mRNA) Silver-seed gourd

Overview
NameCarg08126-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHistone deacetylase
LocationCucurbita_argyrosperma_scaffold_050 : 874811 .. 877404 (+)
Sequence length804
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGCGGTATCGTAATTAGAACACTCCGGCCAGTTCTCTTCGAGTCGCCGGAAAATATCCTAGTTCCTATTTTTCTTTTGTCGCTGTTGAATTGAATCGGTGATCTTGGCTAAAATGTTGTTTTCATCTTCTCTAGCCATGCGTAATCGAAGAGGAAGTTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTTGACTTCTTGTGATCATCTTCCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAGTCAGTTTTTCTATACCCTAAACCGTGTGTGTAGTTCCTTTTTCAGTGGGGTTTTCATTTCTGCTGTGGACATTGCTGAAGGGTTATGTGCTTAATTTTTGTTTGATTTGAGAACTTCTTTGTGAGACAGTTTAGAATGATGTCTTCTTTGTGGATTGTGGGTTTGAATCTCCTTGGGTATCTATGAAGACTCTGAAATATGGTATCCACCCCAAAGTTTTAGGTTAAGGTCTAGAAAACTGGCCATGTTCTTCTTCCTAGATTCAAATAGGAAATCAGAACTGAATTTCCTTTCTTCTAATGCTTTGCTATTTTCAAGGAACAAAATAGGGTAGAAATATGGTATAAGTTAAGCTATTTGTTTGTGTATGCTGTATTGTGGGATCCACATCGGTTGGAGAAGAAAACGAAGCATTTTTTGTAAGGGTGTGGAGACTTTTCCTTAGCAAACGCATTTTAAAAACCTCGAGGGAAAGTCCGAAAAGGATAATATCTGCTAGCGGTGGGCTTGGGCCGTTACATTGTTTTCCTCCCATCTATTCGTGAGTAGATTAGATTTCCTCATACCTTGCATGAACAGCTTACTAGATTTTCATCTCAATGAGGCTATTGTGATTTATGAAACATGGCAATACGTGAAAATATAGTAATGCCTTTAATGTATCGTGGACTTTCCTCTTATGCTGGCTTAGATTTGGTTTATCAGAGAATTGTTTTCTTACCTAAATTATTTTTGACGAATCTTAGATATCTGGAGGCTCCCCTCCCTGCAATTATGTTCATAGTCACCTCCACTAATCCTTAGGAGTCAACACCCACTCCAAGAGACAATAAAGATTTTAAATTTATTGTCTACATGGAGGCTTTAAAACCAAGATCTCGTTTATATGACAGCAAGTGGAGTGCATAAGCCTCTCTAGAGATAGGGGTGAGTACTACGTTAAGTACGGAACGAGCCTTGTCTACAAACTTTAGAAATAGGGGCGAAGCAGCTCGACCGATAGGGAGAGGGTTGACCTCATCTTGCTTGCTTTTGGTGAAACTTAACACACTAGATGATCAGCATTCTTTAGTAGGAATACGACTTTTTAGGCCAACCACAATAAATATCATAAGCAATAGTGAAGCCAAGCCAGATAAAGGCGAGGAGCCCAACTAGCAATAGCAAACAGCCTTCTTATAGCCTCTTTTTCCCTTTACTTCCTATTATCCCTTAAAGCTAGCCTTTACCACTAAGGTCACCATCGGAAGTTAGTATTCCATTGCTGCCGTACATTAAAGGTTTAAGTTCTTCATGTCATTCCCAAAAGATCTTGAAGGATATATTTCAAAATTTCAAGCATTTACCACTAAGGCAGCCACCATTGGAAGTTAGTATTCCATTGATATCATATATAAATGATTCAAGTAAATCCATTTCAGCTGGACATCTCTTTAGATGGTCTGTACGAGTCTAATATAAGTAGATGTTTTGGTATCTTAACTTTACAAGTGGTGTATAATTTTCGGTCTGTAAGTGCCTTCAGACCCATTTTTATGTTTCTGTTTGGTTTCAGTTTCATGATTTGGAAAACGCCTATTTATTTGGTTTATTAATCCATAGAACAATCTACTTATGCAAGATGTGAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAATCATAGTCTTGCACTCAGCTACAGGTAAATGTAAAATGGTTCCTTAATGATACTTTACTTTCTGCTCTTAAGGTTCCTCGATGCCTTGTTTATTAACAATTTGCATTTGGAAACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCGCAACTGATCCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTAAAATTCGGCGAGGCCCCGCCATTTCGATAGGCTTAATCTTCCTGCAGGGAGACTTAAATTTGAGACTTGTGTTGTAATTTTTATAGTCTTGATATCTTTAGGTGTCTTGGTCTCTTAGTTTGAGGAAGTGAGCATTTCAAAATGTGATGTTCTTCACATGAATTGGGTTGAGCTTGTCAGAGGTTCATGATGGGTTGCTGATTGTTTCTTTTACAGAGATACGAGGGACAAAAAGTTGGAATCTCCTATCTTGTTCAGGAAAATTTTAGGGACTTCTTACAAATCTTGATGATAAATCAAATTGGTTCTCACAGTTTCAACTATCTAGCAAAATATATCTCTTTT

mRNA sequence

ATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGCGCCATGCGTAATCGAAGAGGAAGTTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTTGACTTCTTGTGATCATCTTCCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAGTCATTTCATGATTTGGAAAACGCCTATTTATTTGAACAATCTACTTATGCAAGATGTGAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAATCATAGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCGCAACTGATCCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTAAAATTCGGCGAGGCCCCGCCATTTCGATAGGCTTAATCTTCCTGCAGGGAGACTTAAATTTGAGACTTGTGTTGTAATTTTTATAGTCTTGATATCTTTAGGTGTCTTGGTCTCTTAGTTTGAGGAAGTGAGCATTTCAAAATGTGATGTTCTTCACATGAATTGGGTTGAGCTTGTCAGAGGTTCATGATGGGTTGCTGATTGTTTCTTTTACAGAGATACGAGGGACAAAAAGTTGGAATCTCCTATCTTGTTCAGGAAAATTTTAGGGACTTCTTACAAATCTTGATGATAAATCAAATTGGTTCTCACAGTTTCAACTATCTAGCAAAATATATCTCTTTT

Coding sequence (CDS)

ATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGCGCCATGCGTAATCGAAGAGGAAGTTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTTGACTTCTTGTGATCATCTTCCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAGTCATTTCATGATTTGGAAAACGCCTATTTATTTGAACAATCTACTTATGCAAGATGTGAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAATCATAGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCGCAACTGATCCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTAAAATTCGGCGAGGCCCCGCCATTTCGATAG

Protein sequence

MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
Homology
[Close]
BLAST of Carg08126-RA vs. NCBI nr
Match: XP_022942503.1 (BTB/POZ domain-containing protein NPY2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 124/156 (79.49%), Postives = 128/156 (82.05%), Query Frame = 0 

Query: 7   SSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHD 66
           S SS P      +++ +EFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCE    
Sbjct: 488 SGSSTPELPKGVKDLTKEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCE---- 547

Query: 67  LENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSV 126
                         CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSV
Sbjct: 548 --------------CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSV 607

Query: 127 WCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           WCFSCDAYLDAQLIQELRPVHEVAYILKFGE PPFR
Sbjct: 608 WCFSCDAYLDAQLIQELRPVHEVAYILKFGEVPPFR 625

[Close]
BLAST of Carg08126-RA vs. NCBI nr
Match: XP_022149228.1 (histone deacetylase 6 [Momordica charantia])

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 125/162 (77.16%), Postives = 132/162 (81.48%), Query Frame = 0 

Query: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MANEAGSSSSN  PC+IEEE GEE L+GAE+GWVEALT CDHL SL SDLAHIP PDTAC
Sbjct: 1   MANEAGSSSSNLPPCIIEEE-GEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTAC 60

Query: 61  CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALS 120
            E                  C+NPKENWLCLCCKN+ CSRFVNKHMLQHYQQS H LALS
Sbjct: 61  SE------------------CQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALS 120

Query: 121 YSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           YSDLSVWCFSCDAYLDAQ+IQELRPV+EVAYILKFGEAPPFR
Sbjct: 121 YSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR 143

[Close]
BLAST of Carg08126-RA vs. NCBI nr
Match: XP_004152271.1 (PREDICTED: histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_4G000940 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 4.7e-62
Identity = 120/164 (73.17%), Postives = 131/164 (79.88%), Query Frame = 0 

Query: 1   MANEAGSSS--SNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDT 60
           MA +AGSSS  SNP   +IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  ACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLA 120
            C                  ++C+NPKENW+CLCCK+VFCSRFVNKHMLQHY+QS H LA
Sbjct: 61  PC------------------SQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLA 120

Query: 121 LSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           LSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]
BLAST of Carg08126-RA vs. NCBI nr
Match: XP_008454385.1 (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 2.3e-61
Identity = 122/166 (73.49%), Postives = 131/166 (78.92%), Query Frame = 0 

Query: 1   MANEAGSSS--SNPAPCV--IEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPP 60
           MA EAGSSS  SN  P +  IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHS 120
            T C                  ++C+NPKENWLCLCCK+VFCSRFVNKHMLQHY+QS H 
Sbjct: 61  QTPC------------------SQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHC 120

Query: 121 LALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]
BLAST of Carg08126-RA vs. NCBI nr
Match: XP_008373046.1 (PREDICTED: histone deacetylase 6 [Malus domestica] >XP_008356371.1 PREDICTED: histone deacetylase 6-like [Malus domestica])

HSP 1 Score: 224.9 bits (572), Expect = 1.9e-55
Identity = 112/162 (69.14%), Postives = 121/162 (74.69%), Query Frame = 0 

Query: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA +AGSSS+     +  E   E+  YGAESGWVEA TSCDHL SL SDLAHIP PDTAC
Sbjct: 1   MAAQAGSSSAQEDQFLENE---EDLFYGAESGWVEARTSCDHLASLSSDLAHIPTPDTAC 60

Query: 61  CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALS 120
                              RC++P ENWLCLCCK+V CSRFVNKHMLQHYQQSNH LALS
Sbjct: 61  ------------------NRCQHPNENWLCLCCKDVLCSRFVNKHMLQHYQQSNHCLALS 120

Query: 121 YSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           YSDLSVWCFSCDAYLDAQLI +LRPV+E AYILKFGEAPPFR
Sbjct: 121 YSDLSVWCFSCDAYLDAQLIPQLRPVYETAYILKFGEAPPFR 141

[Close]
BLAST of Carg08126-RA vs. TAIR10
Match: AT2G14830.1 (Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-09
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 23 EEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACC---ESFHDLENAYLFEQSTYA 82
          ++++ GA SGWVEA  +CDHL +L  DL H+P PDT C     + HD    +LF     +
Sbjct: 23 QDWILGAGSGWVEARKTCDHLNTLSPDLLHLPTPDTPCSRYKRTEHDTMFCFLFGWRRTS 82

Query: 83 RCENPKENWLC 91
          +C++  +   C
Sbjct: 83 KCKSVVKQLQC 93

[Close]
BLAST of Carg08126-RA vs. TAIR10
Match: AT2G26000.2 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 44.7 bits (104), Expect = 6.4e-05
Identity = 27/104 (25.96%), Postives = 46/104 (44.23%), Query Frame = 0 

Query: 38  TSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVF 97
           T C+H    CS +++ P      C            E S    C+  +  W+C+ C  V 
Sbjct: 184 TMCNH-SFHCSCISNWPDSSCPVCRYCQQQP-----ENSVCCVCQTTENLWMCVICGVVG 243

Query: 98  CSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQ 142
           C R+   H  +H++++ H  +L      VW ++ D Y+  +LIQ
Sbjct: 244 CGRYKEGHARRHWEETEHCYSLELETQRVWDYAGDNYVH-RLIQ 280

[Close]
BLAST of Carg08126-RA vs. Swiss-Prot
Match: sp|Q9UBN7|HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-16
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 81   CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLI 140
            C   +ENW+CL C  V+C R++N HMLQH+  S H L LSY DLS WC+ C AY+  Q +
Sbjct: 1136 CGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQAL 1195

Query: 141  QELRPVHEVAYILKFGEAPP 161
             +   V  +A+  KFGE  P
Sbjct: 1196 LD---VKNIAHQNKFGEDMP 1212

[Close]
BLAST of Carg08126-RA vs. Swiss-Prot
Match: sp|Q9Z2V5|HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 81.6 bits (200), Expect = 8.6e-15
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 81   CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLI 140
            C   +ENW+CL C  V+CSR+VN HM+ H++ S H L LS  DLS WC+ C AY+     
Sbjct: 1070 CGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVHH--- 1129

Query: 141  QELRPVHEVAYILKFGEAPP 161
            ++L+ V   A+  KFGE  P
Sbjct: 1130 EDLQDVKNAAHQNKFGEDMP 1146

[Close]
BLAST of Carg08126-RA vs. Swiss-Prot
Match: sp|Q20296|HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-13
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 0 

Query: 42  HLPSLCSDLAHIPPPDTAC--CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCS 101
           +L  + S  AH   P   C   +    L  A +  ++  + C+   E W CL C    C 
Sbjct: 837 NLEIMDSGPAHAVVPLATCPHLKEVKPLPPAKINARTACSECQIGAEVWTCLTCYKYNCG 896

Query: 102 RFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL-DAQLIQELRPVHEVAYILKFGEA 161
           RFVN+H + H+  S+H +ALS +DLSVWC+ CD+Y+ +  LI      HE     KFGE 
Sbjct: 897 RFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYVHNPALIGAKSAAHE----SKFGET 954

[Close]
BLAST of Carg08126-RA vs. Swiss-Prot
Match: sp|Q54QE6|SIR2A_DICDI (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 81  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL 136
           C +  ENW+C+ C  V CSR VN H  +H++ + H ++ S+SD S WC++CD Y+
Sbjct: 37  CNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

[Close]
BLAST of Carg08126-RA vs. Swiss-Prot
Match: sp|Q7ZUM8|UBP44_DANRE (Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio OX=7955 GN=usp44 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 81  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL 136
           C   +  W CL C +V C R++ +H LQH+++ +H LAL  ++L V+C+ CD Y+
Sbjct: 29  CNTTESVWACLSCSHVACGRYIEEHALQHFKEQHHPLALEVNELYVYCYLCDDYV 83

[Close]
BLAST of Carg08126-RA vs. TrEMBL
Match: tr|A0A0A0KT14|A0A0A0KT14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 3.1e-62
Identity = 120/164 (73.17%), Postives = 131/164 (79.88%), Query Frame = 0 

Query: 1   MANEAGSSS--SNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDT 60
           MA +AGSSS  SNP   +IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  ACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLA 120
            C                  ++C+NPKENW+CLCCK+VFCSRFVNKHMLQHY+QS H LA
Sbjct: 61  PC------------------SQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLA 120

Query: 121 LSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           LSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]
BLAST of Carg08126-RA vs. TrEMBL
Match: tr|A0A1S3BZ94|A0A1S3BZ94_CUCME (histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.5e-61
Identity = 122/166 (73.49%), Postives = 131/166 (78.92%), Query Frame = 0 

Query: 1   MANEAGSSS--SNPAPCV--IEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPP 60
           MA EAGSSS  SN  P +  IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHS 120
            T C                  ++C+NPKENWLCLCCK+VFCSRFVNKHMLQHY+QS H 
Sbjct: 61  QTPC------------------SQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHC 120

Query: 121 LALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]
BLAST of Carg08126-RA vs. TrEMBL
Match: tr|A0A2P6PLB2|A0A2P6PLB2_ROSCH (Putative histone deacetylase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0253411 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.1e-54
Identity = 109/162 (67.28%), Postives = 118/162 (72.84%), Query Frame = 0 

Query: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA   GSSSS P    I E+   + LYGAESGWV+A TSCDHLPSL SDL HIP PDT C
Sbjct: 1   MATHGGSSSSPPQENPIVED-DLDLLYGAESGWVDARTSCDHLPSLSSDLVHIPTPDTHC 60

Query: 61  CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALS 120
                              RC++P ENWLCLCCK V CSRFVNKHMLQHYQQ NHS+ALS
Sbjct: 61  ------------------NRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYQQINHSVALS 120

Query: 121 YSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           YSDLSVWCFSCDAYLDAQLI +LRPV+E AY+LKFGEAPP R
Sbjct: 121 YSDLSVWCFSCDAYLDAQLIPQLRPVYETAYLLKFGEAPPIR 143

[Close]
BLAST of Carg08126-RA vs. TrEMBL
Match: tr|A0A2P4NA25|A0A2P4NA25_QUESU (Isoform 2 of histone deacetylase 6 OS=Quercus suber OX=58331 GN=CFP56_65092 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-53
Identity = 108/167 (64.67%), Postives = 123/167 (73.65%), Query Frame = 0 

Query: 1   MANEAGSSSSNPAPCVIEEEVGEE-----FLYGAESGWVEALTSCDHLPSLCSDLAHIPP 60
           MAN+   SSS+ AP   + ++ +E      +YGAESGWVEA TSCDHL SL +DLAHIP 
Sbjct: 1   MANQETGSSSSSAPQGHQVQLQQEEEELLSIYGAESGWVEARTSCDHLASLSADLAHIPT 60

Query: 61  PDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNH 120
           PDT C                   RC++P ENWLCLCCK+V CSRFVNKHMLQH+QQSNH
Sbjct: 61  PDTPC------------------YRCQHPNENWLCLCCKDVLCSRFVNKHMLQHFQQSNH 120

Query: 121 SLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
            LALSYSDLSVWCFSCDAYLDAQ+I +LRPV+E AYILKFGEAPPFR
Sbjct: 121 CLALSYSDLSVWCFSCDAYLDAQVIMQLRPVYETAYILKFGEAPPFR 149

[Close]
BLAST of Carg08126-RA vs. TrEMBL
Match: tr|M5VQ49|M5VQ49_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G141700 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.5e-53
Identity = 107/162 (66.05%), Postives = 121/162 (74.69%), Query Frame = 0 

Query: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA +AGSSS+  A   +E E  EE ++GAESGWV A T CDHLPSL +DLAHIP PDT C
Sbjct: 1   MAAQAGSSSAAQAEPFVENE--EELIFGAESGWVAARTFCDHLPSLSTDLAHIPAPDTPC 60

Query: 61  CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALS 120
                              RC++P ENWLCLCCK+V CSRFVNKHMLQH+QQ+NH LALS
Sbjct: 61  ------------------NRCQHPNENWLCLCCKDVLCSRFVNKHMLQHFQQTNHCLALS 120

Query: 121 YSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           YSDLSVWCFSCDAYLDAQ+I +LR V+E AYILKFGEAPPFR
Sbjct: 121 YSDLSVWCFSCDAYLDAQVIPQLRGVYETAYILKFGEAPPFR 142

The following BLAST results are available for this feature:
BLAST of Carg08126-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022942503.12.0e-6579.49BTB/POZ domain-containing protein NPY2-like isoform X2 [Cucurbita moschata][more]
XP_022149228.11.3e-6477.16histone deacetylase 6 [Momordica charantia][more]
XP_004152271.14.7e-6273.17PREDICTED: histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical prot... [more]
XP_008454385.12.3e-6173.49PREDICTED: histone deacetylase 6 [Cucumis melo][more]
XP_008373046.11.9e-5569.14PREDICTED: histone deacetylase 6 [Malus domestica] >XP_008356371.1 PREDICTED: hi... [more]
BLAST of Carg08126-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14830.17.3e-0938.03Regulator of Vps4 activity in the MVB pathway protein[more]
AT2G26000.26.4e-0525.96zinc finger (C3HC4-type RING finger) family protein[more]
BLAST of Carg08126-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9UBN7|HDAC6_HUMAN5.9e-1647.50Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2[more]
sp|Q9Z2V5|HDAC6_MOUSE8.6e-1546.25Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3[more]
sp|Q20296|HDA6_CAEEL2.8e-1336.07Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2[more]
sp|Q54QE6|SIR2A_DICDI2.9e-1043.64NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE... [more]
sp|Q7ZUM8|UBP44_DANRE1.2e-0840.00Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio OX=7955 GN=usp44 PE=2 SV... [more]
BLAST of Carg08126-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KT14|A0A0A0KT14_CUCSA3.1e-6273.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1[more]
tr|A0A1S3BZ94|A0A1S3BZ94_CUCME1.5e-6173.49histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1[more]
tr|A0A2P6PLB2|A0A2P6PLB2_ROSCH4.1e-5467.28Putative histone deacetylase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0253411... [more]
tr|A0A2P4NA25|A0A2P4NA25_QUESU1.2e-5364.67Isoform 2 of histone deacetylase 6 OS=Quercus suber OX=58331 GN=CFP56_65092 PE=4... [more]
tr|M5VQ49|M5VQ49_PRUPE1.5e-5366.05Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G141700 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000286His_deacetylse
IPR013083Znf_RING/FYVE/PHD
IPR001607Znf_UBP
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg08126Carg08126gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg08126-RACarg08126-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg08126-RA.exon.1Carg08126-RA.exon.1exon
Carg08126-RA.exon.2Carg08126-RA.exon.2exon
Carg08126-RA.exon.3Carg08126-RA.exon.3exon
Carg08126-RA.exon.4Carg08126-RA.exon.4exon
Carg08126-RA.exon.5Carg08126-RA.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg08126-RA.CDS.1Carg08126-RA.CDS.1CDS
Carg08126-RA.CDS.2Carg08126-RA.CDS.2CDS
Carg08126-RA.CDS.3Carg08126-RA.CDS.3CDS
Carg08126-RA.CDS.4Carg08126-RA.CDS.4CDS
Carg08126-RA.CDS.5Carg08126-RA.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg08126-RA.three_prime_UTR.1Carg08126-RA.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001607Zinc finger, UBP-typeSMARTSM00290Zf_UBP_1coord: 80..126
e-value: 3.4E-6
score: 36.6
IPR001607Zinc finger, UBP-typePFAMPF02148zf-UBPcoord: 80..136
e-value: 1.1E-17
score: 64.0
IPR001607Zinc finger, UBP-typePROSITEPS50271ZF_UBPcoord: 76..137
score: 15.844
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 34..160
e-value: 6.3E-24
score: 85.8
NoneNo IPR availablePANTHERPTHR10625:SF133SUBFAMILY NOT NAMEDcoord: 2..69
NoneNo IPR availablePANTHERPTHR10625:SF133SUBFAMILY NOT NAMEDcoord: 76..161
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 38..147
IPR000286Histone deacetylase familyPANTHERPTHR10625HISTONE DEACETYLASEcoord: 2..69
IPR000286Histone deacetylase familyPANTHERPTHR10625HISTONE DEACETYLASEcoord: 76..161