Carg08001-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAATAATCGCTACAGAATGATATAAATTGTAGCATTGTCGCTTCCGTTTTCCTTCTTTCAGAGAGAGGCAGCTGAAACTGGATACTGAATCGTAGAGTTCAACTTCTTTCCCGCCATCCCAGGTTTCGCTTTTGAACTTTGCAGTTTTTATTCTTATCTTCATCATCTTGTATTGGAGAGTTTTTAAACATAATTTGTGCTTCGTTTTGATGAGATTTCTGAATGTGTAATTGAGTTATTGAATCTATTTCCATGTCTGATTATTCGATTTATGTGGTTGAGAAAACATTGTTGGGTTCGTTCGACAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGGTATCTTCTTCTTCTTTTTTTTTTAATTTTCAATATGCTGCGTTGTTATTCTTGTTACTGTTTTCTTCTTTTATAATTTAGTGAATGTGTCTCCTCGAACGATATTGCATCATCATATCACTTGTTATGATTTAACTTTTATAGGCATTTGAGTTGGATGATTACTTCGTAATTCTTTCAATGCTCTGATTATTAATAAGTTCTAAGCTTATTAAGACGTGAACAATTGTAGAGTGACATTATTGTTGGATAAAAGGAACGGGGAATCTCCATTATGTATCGAGTGTATTGACGGATGAATTTTAGTTCAGGAATTATCAAATAACTTCTTAGGATTGTGGTCTTTTTCGCTTGATGTTTGTTATGGTGTTGTTAAATCCTCACTTTTTAGGCTTCGAGTTCATTATTGGCTTTTCCAGTAGTGGAATTTTATTTTTCGAAGTTGTTTCATTGAAGGCGTTTTTGGCGATGAGTTTGATATCTGTTTAAATCCATAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACGTAACCATTTATCTATAAGTTTCTAAACTTGATTTCATCCTTATAAAACTTGTAAGATTACAACTTTGAATGCATCCCGTTGTTATTGAATTCATTCATTCATTCATTTGTTTTGTAATTGCAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATTCTTTTCATGTCTTGCTTATTTATAGTCTCATTAGACAGTTGTTTACTTTTTGGGTTTGGAGCATACCTGTCCAGTGTGTGGGGTTTAAATGCCATAGTTCTTCCCATTACTTGTTGCAATTAACGAGACATTTAGAGACTTTCCTATTCCTGCCAATTTTCTTGCGTTATAATTATGGTGCTAATTTCAGTATGTTCTGCAGTTTTTGTATCTAAACTTTTAAAAGCTCATTCAATTGTTTTACAGTCAAACATAACGAAAAAACATGTTTATTAAAATTAT TAATAATCGCTACAGAATGATATAAATTGTAGCATTGTCGCTTCCGTTTTCCTTCTTTCAGAGAGAGGCAGCTGAAACTGGATACTGAATCGTAGAGTTCAACTTCTTTCCCGCCATCCCAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATTCTTTTCATGTCTTGCTTATTTATAGTCTCATTAGACAGTTGTTTACTTTTTGGGTTTGGAGCATACCTGTCCAGTGTGTGGGGTTTAAATGCCATAGTTCTTCCCATTACTTGTTGCAATTAACGAGACATTTAGAGACTTTCCTATTCCTGCCAATTTTCTTGCGTTATAATTATGGTGCTAATTTCAGTATGTTCTGCAGTTTTTGTATCTAAACTTTTAAAAGCTCATTCAATTGTTTTACAGTCAAACATAACGAAAAAACATGTTTATTAAAATTAT ATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ
BLAST of Carg08001-RA vs. NCBI nr
Match: XP_008439109.1 (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S ribosomal protein S20-2-like [Cucurbita moschata] >XP_022973095.1 40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023516475.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 243.0 bits (619), Expect = 5.1e-61 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg08001-RA vs. NCBI nr
Match: XP_022922646.1 (40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 240.0 bits (611), Expect = 4.3e-60 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of Carg08001-RA vs. NCBI nr
Match: XP_022922647.1 (40S ribosomal protein S20-2-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 240.0 bits (611), Expect = 4.3e-60 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of Carg08001-RA vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 240.0 bits (611), Expect = 4.3e-60 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of Carg08001-RA vs. NCBI nr
Match: XP_024198508.1 (40S ribosomal protein S20-2 [Rosa chinensis] >PRQ59871.1 putative ribosomal protein S10 [Rosa chinensis]) HSP 1 Score: 239.6 bits (610), Expect = 5.7e-60 Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of Carg08001-RA vs. TAIR10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein) HSP 1 Score: 217.6 bits (553), Expect = 4.2e-57 Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0
BLAST of Carg08001-RA vs. TAIR10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein) HSP 1 Score: 214.5 bits (545), Expect = 3.5e-56 Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0
BLAST of Carg08001-RA vs. TAIR10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein) HSP 1 Score: 214.5 bits (545), Expect = 3.5e-56 Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0
BLAST of Carg08001-RA vs. Swiss-Prot
Match: sp|Q9STY6|RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1) HSP 1 Score: 217.6 bits (553), Expect = 7.5e-56 Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0
BLAST of Carg08001-RA vs. Swiss-Prot
Match: sp|P49200|RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2) HSP 1 Score: 214.5 bits (545), Expect = 6.4e-55 Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0
BLAST of Carg08001-RA vs. Swiss-Prot
Match: sp|P35686|RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2) HSP 1 Score: 200.7 bits (509), Expect = 9.5e-51 Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0
BLAST of Carg08001-RA vs. Swiss-Prot
Match: sp|P23403|RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.2e-42 Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 0
BLAST of Carg08001-RA vs. Swiss-Prot
Match: sp|Q3ZBH8|RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 8.1e-42 Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0
BLAST of Carg08001-RA vs. TrEMBL
Match: tr|A0A1S3AXJ9|A0A1S3AXJ9_CUCME (40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 3.4e-61 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg08001-RA vs. TrEMBL
Match: tr|A0A2P6SMI1|A0A2P6SMI1_ROSCH (Putative ribosomal protein S10 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0374951 PE=3 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 3.7e-60 Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of Carg08001-RA vs. TrEMBL
Match: tr|A0A1S4E624|A0A1S4E624_CUCME (40S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 6.4e-60 Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0
BLAST of Carg08001-RA vs. TrEMBL
Match: tr|A0A1R3I786|A0A1R3I786_9ROSI (Ribosomal protein S10 OS=Corchorus olitorius OX=93759 GN=COLO4_24768 PE=3 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 1.9e-59 Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0
BLAST of Carg08001-RA vs. TrEMBL
Match: tr|A0A1R3IG42|A0A1R3IG42_COCAP (Ribosomal protein S10 OS=Corchorus capsularis OX=210143 GN=CCACVL1_12358 PE=3 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 4.1e-59 Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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