Carg03427-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03427-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	myb-related protein Myb4
Location	Cucurbita_argyrosperma_scaffold_005 : 1791429 .. 1792461 (-)
Sequence length	705

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTAAGGTTGATTTTCAGAAACATTATATTTGTTTTATTTATCATTTATTTAACGATGAATTCTAACGTTTTTTTGTTTCCTTAATTCATTTTATAGGATTATTACGATGTGGAAAAAGTTGTCGTTTGAGATGGATCAATTACCTTCGACCTGATGTAAAACGAGGAAACTTTACACCGGATGAAGAGGAAACCATAATCAAGTTGCATAAAACTTGGGGGAACAAGTATGATTTCATTTACGAGTTTTTACTATAAATTTTAATCTTTCTTCCTTTAACAAATTTAACACGTTATAGGTGGTCTAAAATTGCATCTCGTTTGCCGGGAAGAACAGACAACGAGATAAAAAATGTTTGGAACACACATTTAAAGAAGAGATTATTAAAGACGACGACAACCAAAGATTGCAACGAACCAAAGGAGTCTCCGACAACTTCATCATCTTACTCCTCGAGTTTACGCCCCTCCAACGAAACTCAAGACTTAGAGACCGAACAACCGAACAAGACCAACTCTGTTAACAACGACCTCTTTTGTCACGAACAACAAACCACGAGTACCCTTTCGAGTAATACCTCAAATTCAAACTCAAGTAGCCAAGTTGACAAAGTTTGGCCTCAAAACCACTTAGATTTTGGAGAGGAAGTGGAGAAGAAGAAAGAGAATAAGCAAATAAGGTCGGAATTGGAATTGGAATTGGAATTGGAATTGGAATCGGAATCAATTGAAATCCCGTTGGAATGGGACAAAGATTTTTGGAACATATTAGATTTAGAGGACATAGATTTGTTCGGATCTAACGAGGTAGATCAATATTACTGTCAAGCTTCGAACTTTGGAGCAGAAAAGAGGCAGGAATTCGAAAATGATAAGTGGTTTAAGTATTTGGAGAACGAGCTAGGATTGGAAGCCGATGGCTGCACCGGCCTCGACGATGTCACGGCGGCGGAGAGATTGCTAATGGACGACGTGGACCCTTGTATGGCTTATTTTGCAGATGGGTTGACTCAACAACTTCAGAGCTAA

mRNA sequence

ATGAGATTATTACGATGTGGAAAAAGTTGTCGTTTGAGATGGATCAATTACCTTCGACCTGATGTAAAACGAGGAAACTTTACACCGGATGAAGAGGAAACCATAATCAAGTTGCATAAAACTTGGGGGAACAATTTACGCCCCTCCAACGAAACTCAAGACTTAGAGACCGAACAACCGAACAAGACCAACTCTGTTAACAACGACCTCTTTTGTCACGAACAACAAACCACGAGTACCCTTTCGAGTAATACCTCAAATTCAAACTCAAGTAGCCAAGTTGACAAAGTTTGGCCTCAAAACCACTTAGATTTTGGAGAGGAAGTGGAGAAGAAGAAAGAGAATAAGCAAATAAGGTCGGAATTGGAATTGGAATTGGAATTGGAATTGGAATCGGAATCAATTGAAATCCCGTTGGAATGGGACAAAGATTTTTGGAACATATTAGATTTAGAGGACATAGATTTGTTCGGATCTAACGAGGTAGATCAATATTACTGTCAAGCTTCGAACTTTGGAGCAGAAAAGAGGCAGGAATTCGAAAATGATAAGTGGTTTAAGTATTTGGAGAACGAGCTAGGATTGGAAGCCGATGGCTGCACCGGCCTCGACGATGTCACGGCGGCGGAGAGATTGCTAATGGACGACGTGGACCCTTGTATGGCTTATTTTGCAGATGGGTTGACTCAACAACTTCAGAGCTAA

Coding sequence (CDS)

ATGAGATTATTACGATGTGGAAAAAGTTGTCGTTTGAGATGGATCAATTACCTTCGACCTGATGTAAAACGAGGAAACTTTACACCGGATGAAGAGGAAACCATAATCAAGTTGCATAAAACTTGGGGGAACAATTTACGCCCCTCCAACGAAACTCAAGACTTAGAGACCGAACAACCGAACAAGACCAACTCTGTTAACAACGACCTCTTTTGTCACGAACAACAAACCACGAGTACCCTTTCGAGTAATACCTCAAATTCAAACTCAAGTAGCCAAGTTGACAAAGTTTGGCCTCAAAACCACTTAGATTTTGGAGAGGAAGTGGAGAAGAAGAAAGAGAATAAGCAAATAAGGTCGGAATTGGAATTGGAATTGGAATTGGAATTGGAATCGGAATCAATTGAAATCCCGTTGGAATGGGACAAAGATTTTTGGAACATATTAGATTTAGAGGACATAGATTTGTTCGGATCTAACGAGGTAGATCAATATTACTGTCAAGCTTCGAACTTTGGAGCAGAAAAGAGGCAGGAATTCGAAAATGATAAGTGGTTTAAGTATTTGGAGAACGAGCTAGGATTGGAAGCCGATGGCTGCACCGGCCTCGACGATGTCACGGCGGCGGAGAGATTGCTAATGGACGACGTGGACCCTTGTATGGCTTATTTTGCAGATGGGTTGACTCAACAACTTCAGAGCTAA

Protein sequence

MRLLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNLRPSNETQDLETEQPNKTNSVNNDLFCHEQQTTSTLSSNTSNSNSSSQVDKVWPQNHLDFGEEVEKKKENKQIRSELELELELELESESIEIPLEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFENDKWFKYLENELGLEADGCTGLDDVTAAERLLMDDVDPCMAYFADGLTQQLQS

Homology

[Close]

BLAST of Carg03427-RA vs. NCBI nr
Match: XP_022943493.1 (transcription factor MYB63-like [Cucurbita moschata])

HSP 1 Score: 346.7 bits (888), Expect = 6.3e-92
Identity = 221/285 (77.54%), Postives = 223/285 (78.25%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNN----------------- 62
           LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN                  
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIK 107

Query: 63  ------------------------------------LRPSNETQDLETEQPNKTNSVNND 122
                                                RPSNETQDLETE+PNKTNSVNND
Sbjct: 108 NVWNTHLKKRLLKXXXXXXXXXXXXXXXXXXXXXXXXRPSNETQDLETERPNKTNSVNND 167

Query: 123 LFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXXXXXXXXX 182
           LFC EQQTTS+ XXXXXXXXXXXQVDKVWPQNHLDFGEEVE   XXXXXXXXXXXXXXXX
Sbjct: 168 LFCLEQQTTSSXXXXXXXXXXXXQVDKVWPQNHLDFGEEVE--KXXXXXXXXXXXXXXXX 227

Query: 183 XXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFENDKWFKYL 235
           XXXXXXXXX EWDKDFWNILDLEDIDLFGSNEVDQYYCQASNF AEKRQEFENDKWFKYL
Sbjct: 228 XXXXXXXXXLEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFEAEKRQEFENDKWFKYL 287

[Close]

BLAST of Carg03427-RA vs. NCBI nr
Match: XP_022986071.1 (transcription factor MYB63-like [Cucurbita maxima])

HSP 1 Score: 327.8 bits (839), Expect = 3.0e-86
Identity = 198/280 (70.71%), Postives = 201/280 (71.79%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNN----------------- 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGN                  
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTQDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIK 107

Query: 63  ------------------------------------LRPSNETQDLETEQPNKTNSVNND 122
                                               LR SNETQDLETEQPNKTN V +D
Sbjct: 108 NVWNTHLKKRLLNTATTKDCNEPKESLTTXXXXXXXLRLSNETQDLETEQPNKTNYVTSD 167

Query: 123 LFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXXXXXXXXX 182
           LFC EQQTTS+L           QVDKVWPQNHLDFGEEVE     XXXXXXXXXXXXXX
Sbjct: 168 LFCPEQQTTSSLSSNPSNSNSSSQVDKVWPQNHLDFGEEVE----KXXXXXXXXXXXXXX 227

Query: 183 XXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFENDKWFKYL 230
           XXXXXXXX  EWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFG EKRQEFENDKWFKYL
Sbjct: 228 XXXXXXXXPLEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGEEKRQEFENDKWFKYL 287

[Close]

BLAST of Carg03427-RA vs. NCBI nr
Match: XP_023511898.1 (transcription factor MYB63-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.8 bits (839), Expect = 3.0e-86
Identity = 186/283 (65.72%), Postives = 188/283 (66.43%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNN----------------- 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGN                  
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTQDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIK 107

Query: 63  ------------------------------------LRPSNETQDLETEQPNKTNSVNND 122
                                                R SNETQD E EQPNKTNSVNND
Sbjct: 108 NVWNTHLKKRLLKTTITKDCNEPKESPXXXXXXXXXXRLSNETQDFEPEQPNKTNSVNND 167

Query: 123 LFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXXXXXXXXX 182
           LFC EQQTTS+ XXXXXXXXXX QVDK WPQNHLDFGEEVE                   
Sbjct: 168 LFCPEQQTTSSXXXXXXXXXXXSQVDKFWPQNHLDFGEEVE--------KKKENKQIRSE 227

Query: 183 XXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFENDKWFKYL 233
                     EWDKDFWNILDLEDIDLF SNEVDQYYCQASNFG EK+QEFENDKWFKYL
Sbjct: 228 SELESIEIPLEWDKDFWNILDLEDIDLFESNEVDQYYCQASNFGTEKKQEFENDKWFKYL 287

[Close]

BLAST of Carg03427-RA vs. NCBI nr
Match: XP_022947599.1 (transcription factor MYB63-like [Cucurbita moschata])

HSP 1 Score: 216.5 bits (550), Expect = 9.8e-53
Identity = 138/285 (48.42%), Postives = 160/285 (56.14%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN------------------ 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGN                  
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTQDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIK 107

Query: 63  ---------NLRP----------------------------SNETQDLETEQPNKTNSVN 122
                     L P                            SNE Q+LETE  NK+N +N
Sbjct: 108 NVWNTHLKKRLLPTSKVSDXXXXXXXXXXXXXXXXXXXXXXSNENQNLETEPLNKSNPIN 167

Query: 123 NDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXXXXXXX 182
           ++L C +QQTTST            QV+  WPQN +DFGEEV+        XXXXXX   
Sbjct: 168 DNLVCSKQQTTST--SISSNSISSSQVEGCWPQNRVDFGEEVK-----EKKXXXXXXEMG 227

Query: 183 XXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFENDKWFK 233
                       E D +FW++LDL++I LF S+EVDQ +C+ SNF  +K QEFEN KWFK
Sbjct: 228 SKSNNMGIKIPLESDIEFWDMLDLDNIHLFESDEVDQSFCEGSNFVVQKNQEFENAKWFK 287

[Close]

BLAST of Carg03427-RA vs. NCBI nr
Match: KGN46804.1 (hypothetical protein Csa_6G136580 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 8.3e-52
Identity = 162/234 (69.23%), Postives = 171/234 (73.08%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNLRPSNETQDLETEQPNK 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGNNL  SN+TQ++ETEQ NK
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTEDEEETIIKLHKTWGNNLVSSNQTQNIETEQLNK 107

Query: 63  TNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXX 122
           TNS+N              XXXXXXXXXXX                  XXXXXXXXXXXX
Sbjct: 108 TNSIN------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 167

Query: 123 XXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFEN 182
           XXXXXXXXXXXXXXXXX      WN+LDL DIDLF SNEVDQ YCQ SNFGA+K Q+FEN
Sbjct: 168 XXXXXXXXXXXXXXXXXXXXXXXWNMLDL-DIDLFESNEVDQNYCQGSNFGAQKNQDFEN 227

Query: 183 DKWFKYLENELGL----EADGCTGLDDVTAAERLLMDDVDPCMAYFADGLTQQL 233
             WFKYLENELGL    E DG  G+DD T  +  L DDVDPCMAYFADG TQQL
Sbjct: 228 HMWFKYLENELGLNRPPEPDGRAGVDDTTTEDHRLEDDVDPCMAYFADGFTQQL 274

[Close]

BLAST of Carg03427-RA vs. TAIR10
Match: AT1G16490.1 (myb domain protein 58)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-19
Identity = 65/206 (31.55%), Postives = 92/206 (44.66%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNL---------RPSNETQ 62
           LLRCGKSCRLRWINYLRPDVKRGNF+ +EE+TIIKLH+++GN           R  NE +
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIK 107

Query: 63  DLETEQPNKTNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHL---DFGEEVE 122
           ++      K  S   +L   E  +  +L                +  +++   D   ++ 
Sbjct: 108 NVWHTHLKKRLSSETNLNADEAGSKGSLNEEENSQESSPNASMSFAGSNISSKDDDAQIS 167

Query: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQAS 182
                                        + D D W+ +D  D            + Q  
Sbjct: 168 QMFEHILTYSEFTGMLQEVDKPELLEMPFDLDPDIWSFIDGSD-----------SFQQPE 227

Query: 183 NFGAEKRQEFENDKWFKYLENELGLE 197
           N   ++ +E E DKWFK+LE+ELGLE
Sbjct: 228 NRALQESEEDEVDKWFKHLESELGLE 242

[Close]

BLAST of Carg03427-RA vs. TAIR10
Match: AT2G31180.1 (myb domain protein 14)

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-16
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFTP EE+TII LH++ GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDIKRGNFTPQEEQTIINLHESLGN 87

[Close]

BLAST of Carg03427-RA vs. TAIR10
Match: AT1G06180.1 (myb domain protein 13)

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-16
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFTP EE+TII LH+  GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDIKRGNFTPHEEDTIISLHQLLGN 87

[Close]

BLAST of Carg03427-RA vs. TAIR10
Match: AT1G79180.1 (myb domain protein 63)

HSP 1 Score: 81.3 bits (199), Expect = 9.0e-16
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNLRPSNETQDLETEQPNK 62
           LLRCGKSCRLRWINYLRPD+KRGNFT +EEETIIKLH  +G      N+   + ++ P +
Sbjct: 48  LLRCGKSCRLRWINYLRPDLKRGNFTSEEEETIIKLHHNYG------NKWSKIASQLPGR 107

Query: 63  T-NSVNNDLFCH 74
           T N + N    H
Sbjct: 108 TDNEIKNVWHTH 113

[Close]

BLAST of Carg03427-RA vs. TAIR10
Match: AT2G16720.1 (myb domain protein 7)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-15
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFT DE+E IIKLH   GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDLKRGNFTHDEDELIIKLHSLLGN 87

[Close]

BLAST of Carg03427-RA vs. Swiss-Prot
Match: sp|Q9SA47|MYB58_ARATH (Transcription factor MYB58 OS=Arabidopsis thaliana OX=3702 GN=MYB58 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.4e-18
Identity = 65/206 (31.55%), Postives = 92/206 (44.66%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNL---------RPSNETQ 62
           LLRCGKSCRLRWINYLRPDVKRGNF+ +EE+TIIKLH+++GN           R  NE +
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIK 107

Query: 63  DLETEQPNKTNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHL---DFGEEVE 122
           ++      K  S   +L   E  +  +L                +  +++   D   ++ 
Sbjct: 108 NVWHTHLKKRLSSETNLNADEAGSKGSLNEEENSQESSPNASMSFAGSNISSKDDDAQIS 167

Query: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQAS 182
                                        + D D W+ +D  D            + Q  
Sbjct: 168 QMFEHILTYSEFTGMLQEVDKPELLEMPFDLDPDIWSFIDGSD-----------SFQQPE 227

Query: 183 NFGAEKRQEFENDKWFKYLENELGLE 197
           N   ++ +E E DKWFK+LE+ELGLE
Sbjct: 228 NRALQESEEDEVDKWFKHLESELGLE 242

[Close]

BLAST of Carg03427-RA vs. Swiss-Prot
Match: sp|Q9SJX8|MYB14_ARATH (Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.3e-15
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFTP EE+TII LH++ GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDIKRGNFTPQEEQTIINLHESLGN 87

[Close]

BLAST of Carg03427-RA vs. Swiss-Prot
Match: sp|Q9LNC9|MYB13_ARATH (Transcription factor MYB13 OS=Arabidopsis thaliana OX=3702 GN=MYB13 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.5e-15
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFTP EE+TII LH+  GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDIKRGNFTPHEEDTIISLHQLLGN 87

[Close]

BLAST of Carg03427-RA vs. Swiss-Prot
Match: sp|Q6R0A6|MYB63_ARATH (Transcription factor MYB63 OS=Arabidopsis thaliana OX=3702 GN=MYB63 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNLRPSNETQDLETEQPNK 62
           LLRCGKSCRLRWINYLRPD+KRGNFT +EEETIIKLH  +G      N+   + ++ P +
Sbjct: 48  LLRCGKSCRLRWINYLRPDLKRGNFTSEEEETIIKLHHNYG------NKWSKIASQLPGR 107

Query: 63  T-NSVNNDLFCH 74
           T N + N    H
Sbjct: 108 TDNEIKNVWHTH 113

[Close]

BLAST of Carg03427-RA vs. Swiss-Prot
Match: sp|Q42379|MYB7_ARATH (Transcription factor MYB7 OS=Arabidopsis thaliana OX=3702 GN=MYB7 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-14
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFT DE+E IIKLH   GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDLKRGNFTHDEDELIIKLHSLLGN 87

[Close]

BLAST of Carg03427-RA vs. TrEMBL
Match: tr|A0A0A0KD77|A0A0A0KD77_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136580 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.5e-52
Identity = 162/234 (69.23%), Postives = 171/234 (73.08%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNLRPSNETQDLETEQPNK 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGNNL  SN+TQ++ETEQ NK
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTEDEEETIIKLHKTWGNNLVSSNQTQNIETEQLNK 107

Query: 63  TNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXX 122
           TNS+N              XXXXXXXXXXX                  XXXXXXXXXXXX
Sbjct: 108 TNSIN------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 167

Query: 123 XXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFEN 182
           XXXXXXXXXXXXXXXXX      WN+LDL DIDLF SNEVDQ YCQ SNFGA+K Q+FEN
Sbjct: 168 XXXXXXXXXXXXXXXXXXXXXXXWNMLDL-DIDLFESNEVDQNYCQGSNFGAQKNQDFEN 227

Query: 183 DKWFKYLENELGL----EADGCTGLDDVTAAERLLMDDVDPCMAYFADGLTQQL 233
             WFKYLENELGL    E DG  G+DD T  +  L DDVDPCMAYFADG TQQL
Sbjct: 228 HMWFKYLENELGLNRPPEPDGRAGVDDTTTEDHRLEDDVDPCMAYFADGFTQQL 274

[Close]

BLAST of Carg03427-RA vs. TrEMBL
Match: tr|A0A1S3C3L5|A0A1S3C3L5_CUCME (myb-related protein Myb4 OS=Cucumis melo OX=3656 GN=LOC103496292 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.7e-43
Identity = 160/294 (54.42%), Postives = 170/294 (57.82%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNN----------------- 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGN                  
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTEDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIK 107

Query: 63  -------------------------------------------LRPSNETQDLETEQPNK 122
                                                         SN+TQ++ETEQ NK
Sbjct: 108 NVWNTHLKKRLIPTTKVVSEDXXXXXXXXXXXXXXXXXXXXXXXXXSNQTQNIETEQLNK 167

Query: 123 TNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXX 182
           TNS+               XXXXXXXXXXX                  XXXXXXXXXXXX
Sbjct: 168 TNSI--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 227

Query: 183 XXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFEN 233
           XXXXXXXXXXXXXXXXX      WN+LDL DIDLF SNEVDQ YCQ SNFG +K Q+FEN
Sbjct: 228 XXXXXXXXXXXXXXXXXXXXXXXWNMLDL-DIDLFESNEVDQNYCQGSNFGVQKNQDFEN 287

[Close]

BLAST of Carg03427-RA vs. TrEMBL
Match: tr|A0A068UZ54|A0A068UZ54_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00038580001 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 78/227 (34.36%), Postives = 103/227 (45.37%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNL---------RPSNETQ 62
           LLRCGKSCRLRWINYLRPDVKRGNFTP+EE+TII LH   GN           R  NE +
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTPEEEQTIINLHNALGNKWSKIASHLPGRTDNEIK 107

Query: 63  DL-ETEQPNKTNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDK-----VWP-----QNH 122
           ++  T    +    N+D  CH++  TS              +D+     + P      N 
Sbjct: 108 NVWNTHLKKRLVIGNDDANCHQKIETSNSFTSYSASPSPSSIDEQQEPCISPTHPNAPNL 167

Query: 123 LDFGEEVE----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDKDFWNILD-L 182
            +FG+  E                                       E D DFWN LD L
Sbjct: 168 ENFGQPAEETCSLDSCINSKASPEVRKTTTEEPKEMAQDGNTMEIPLEPDADFWNFLDGL 227

Query: 183 EDIDLFGSNEVDQYY--CQASNFGAEKRQE-FENDKWFKYLENELGL 196
           + +D     +  Q +   Q+SNFG  ++++  E  +W +YLENELGL
Sbjct: 228 DPMDKPTECQPQQEHGVSQSSNFGENQQEDVHEYKRWLRYLENELGL 274

[Close]

BLAST of Carg03427-RA vs. TrEMBL
Match: tr|A0A2R6QTC4|A0A2R6QTC4_ACTCH (Myb-related protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc33485 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.8e-17
Identity = 103/215 (47.91%), Postives = 127/215 (59.07%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNL---------RPSNETQ 62
           LLRCGKSCRLRWINYLRPDVKRG+FT +EEETIIKLH++ GN           R  NE +
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGHFTLEEEETIIKLHQSLGNRWSKIASSLPGRTDNEIK 107

Query: 63  DLETEQPNKTNSVNNDLFCHEQQTT-----STLXXXXXXXXXXXQVDKVWPQNHLDFGEE 122
           ++      K   V+ D    + + T     ++             ++K      ++ G+E
Sbjct: 108 NVWNTHLKKRALVHKDANYDKVELTKEFSRTSSSFSTSSFINMEVLEKKENTLTMENGDE 167

Query: 123 VE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEV---DQ 182
            + XXXXXXXXXXXXXXXXXXXXXXXX     E D DFW +LD  ++D F SNE    DQ
Sbjct: 168 PKXXXXXXXXXXXXXXXXXXXXXXXXXIEIPLESDIDFWEMLD--NLDPFKSNESQPHDQ 227

Query: 183 Y-YCQASNFGAE-KRQEFENDKWFKYLENELGLEA 198
           +   ++SN G E    E E  KW KYLENELGLEA
Sbjct: 228 FEVSKSSNLGEEDDHGEIEYRKWLKYLENELGLEA 260

[Close]

BLAST of Carg03427-RA vs. TrEMBL
Match: tr|A0A2R6QBR3|A0A2R6QBR3_ACTCH (Myb-related protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18836 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 107/216 (49.54%), Postives = 123/216 (56.94%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNL---------RPSNETQ 62
           LLRCGKSCRLRWINYLRPDVKRGNFT  EEETIIKLH++ GN           R  NE +
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTQQEEETIIKLHQSLGNRWSKIASSLPGRTDNEIK 107

Query: 63  DLETEQPNKTNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNH-------LDFG 122
           ++      K   VN D    + + T        XXXXXX ++    +             
Sbjct: 108 NVWNTHLKKRTLVNKDANYDKDELTREFSRNSSXXXXXXXINMEVLEKEDNTLTMXXXXX 167

Query: 123 EEVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQY- 182
               XXXXXXXXXXXXXXXXXXXXXXXXXX   E D DFW +LD  ++D F SNE   + 
Sbjct: 168 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPWESDIDFWEMLD--NLDPFKSNESQPHE 227

Query: 183 ---YCQASNFGAE-KRQEFENDKWFKYLENELGLEA 198
                ++SN G E    E E  KW K LENELGLEA
Sbjct: 228 QLEVSKSSNLGEEDDHGEIEYRKWLKCLENELGLEA 261

The following BLAST results are available for this feature:

BLAST of Carg03427-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943493.1	6.3e-92	77.54	transcription factor MYB63-like [Cucurbita moschata]	[more]
XP_022986071.1	3.0e-86	70.71	transcription factor MYB63-like [Cucurbita maxima]	[more]
XP_023511898.1	3.0e-86	65.72	transcription factor MYB63-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947599.1	9.8e-53	48.42	transcription factor MYB63-like [Cucurbita moschata]	[more]
KGN46804.1	8.3e-52	69.23	hypothetical protein Csa_6G136580 [Cucumis sativus]	[more]

BLAST of Carg03427-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16490.1	3.0e-19	31.55	myb domain protein 58	[more]
AT2G31180.1	2.4e-16	83.33	myb domain protein 14	[more]
AT1G06180.1	5.3e-16	83.33	myb domain protein 13	[more]
AT1G79180.1	9.0e-16	56.94	myb domain protein 63	[more]
AT2G16720.1	2.6e-15	83.33	myb domain protein 7	[more]

BLAST of Carg03427-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SA47\|MYB58_ARATH	5.4e-18	31.55	Transcription factor MYB58 OS=Arabidopsis thaliana OX=3702 GN=MYB58 PE=2 SV=1	[more]
sp\|Q9SJX8\|MYB14_ARATH	4.3e-15	83.33	Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1	[more]
sp\|Q9LNC9\|MYB13_ARATH	9.5e-15	83.33	Transcription factor MYB13 OS=Arabidopsis thaliana OX=3702 GN=MYB13 PE=2 SV=1	[more]
sp\|Q6R0A6\|MYB63_ARATH	1.6e-14	56.94	Transcription factor MYB63 OS=Arabidopsis thaliana OX=3702 GN=MYB63 PE=2 SV=1	[more]
sp\|Q42379\|MYB7_ARATH	4.7e-14	83.33	Transcription factor MYB7 OS=Arabidopsis thaliana OX=3702 GN=MYB7 PE=1 SV=1	[more]

BLAST of Carg03427-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KD77\|A0A0A0KD77_CUCSA	5.5e-52	69.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136580 PE=4 SV=1	[more]
tr\|A0A1S3C3L5\|A0A1S3C3L5_CUCME	4.7e-43	54.42	myb-related protein Myb4 OS=Cucumis melo OX=3656 GN=LOC103496292 PE=4 SV=1	[more]
tr\|A0A068UZ54\|A0A068UZ54_COFCA	1.2e-17	34.36	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00038580001 PE=4 ...	[more]
tr\|A0A2R6QTC4\|A0A2R6QTC4_ACTCH	5.8e-17	47.91	Myb-related protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]
tr\|A0A2R6QBR3\|A0A2R6QBR3_ACTCH	3.7e-16	49.54	Myb-related protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03427	Carg03427	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03427-RA	Carg03427-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03427-RA.CDS.3	Carg03427-RA.CDS.3	CDS
Carg03427-RA.CDS.2	Carg03427-RA.CDS.2	CDS
Carg03427-RA.CDS.1	Carg03427-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03427-RA.exon.3	Carg03427-RA.exon.3	exon
Carg03427-RA.exon.2	Carg03427-RA.exon.2	exon
Carg03427-RA.exon.1	Carg03427-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 2..24 e-value: 3.0E-5 score: 25.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..97
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 2..44
None	No IPR available	PANTHER	PTHR10641:SF923	SUBFAMILY NOT NAMED	coord: 2..44
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 1..22 score: 11.482
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 5..45