Carg03427 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03427
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	myb-related protein Myb4
Location	Cucurbita_argyrosperma_scaffold_005 : 1791429 .. 1792461 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTAAGGTTGATTTTCAGAAACATTATATTTGTTTTATTTATCATTTATTTAACGATGAATTCTAACGTTTTTTTGTTTCCTTAATTCATTTTATAGGATTATTACGATGTGGAAAAAGTTGTCGTTTGAGATGGATCAATTACCTTCGACCTGATGTAAAACGAGGAAACTTTACACCGGATGAAGAGGAAACCATAATCAAGTTGCATAAAACTTGGGGGAACAAGTATGATTTCATTTACGAGTTTTTACTATAAATTTTAATCTTTCTTCCTTTAACAAATTTAACACGTTATAGGTGGTCTAAAATTGCATCTCGTTTGCCGGGAAGAACAGACAACGAGATAAAAAATGTTTGGAACACACATTTAAAGAAGAGATTATTAAAGACGACGACAACCAAAGATTGCAACGAACCAAAGGAGTCTCCGACAACTTCATCATCTTACTCCTCGAGTTTACGCCCCTCCAACGAAACTCAAGACTTAGAGACCGAACAACCGAACAAGACCAACTCTGTTAACAACGACCTCTTTTGTCACGAACAACAAACCACGAGTACCCTTTCGAGTAATACCTCAAATTCAAACTCAAGTAGCCAAGTTGACAAAGTTTGGCCTCAAAACCACTTAGATTTTGGAGAGGAAGTGGAGAAGAAGAAAGAGAATAAGCAAATAAGGTCGGAATTGGAATTGGAATTGGAATTGGAATTGGAATCGGAATCAATTGAAATCCCGTTGGAATGGGACAAAGATTTTTGGAACATATTAGATTTAGAGGACATAGATTTGTTCGGATCTAACGAGGTAGATCAATATTACTGTCAAGCTTCGAACTTTGGAGCAGAAAAGAGGCAGGAATTCGAAAATGATAAGTGGTTTAAGTATTTGGAGAACGAGCTAGGATTGGAAGCCGATGGCTGCACCGGCCTCGACGATGTCACGGCGGCGGAGAGATTGCTAATGGACGACGTGGACCCTTGTATGGCTTATTTTGCAGATGGGTTGACTCAACAACTTCAGAGCTAA

mRNA sequence

ATGAGATTATTACGATGTGGAAAAAGTTGTCGTTTGAGATGGATCAATTACCTTCGACCTGATGTAAAACGAGGAAACTTTACACCGGATGAAGAGGAAACCATAATCAAGTTGCATAAAACTTGGGGGAACAATTTACGCCCCTCCAACGAAACTCAAGACTTAGAGACCGAACAACCGAACAAGACCAACTCTGTTAACAACGACCTCTTTTGTCACGAACAACAAACCACGAGTACCCTTTCGAGTAATACCTCAAATTCAAACTCAAGTAGCCAAGTTGACAAAGTTTGGCCTCAAAACCACTTAGATTTTGGAGAGGAAGTGGAGAAGAAGAAAGAGAATAAGCAAATAAGGTCGGAATTGGAATTGGAATTGGAATTGGAATTGGAATCGGAATCAATTGAAATCCCGTTGGAATGGGACAAAGATTTTTGGAACATATTAGATTTAGAGGACATAGATTTGTTCGGATCTAACGAGGTAGATCAATATTACTGTCAAGCTTCGAACTTTGGAGCAGAAAAGAGGCAGGAATTCGAAAATGATAAGTGGTTTAAGTATTTGGAGAACGAGCTAGGATTGGAAGCCGATGGCTGCACCGGCCTCGACGATGTCACGGCGGCGGAGAGATTGCTAATGGACGACGTGGACCCTTGTATGGCTTATTTTGCAGATGGGTTGACTCAACAACTTCAGAGCTAA

Coding sequence (CDS)

ATGAGATTATTACGATGTGGAAAAAGTTGTCGTTTGAGATGGATCAATTACCTTCGACCTGATGTAAAACGAGGAAACTTTACACCGGATGAAGAGGAAACCATAATCAAGTTGCATAAAACTTGGGGGAACAATTTACGCCCCTCCAACGAAACTCAAGACTTAGAGACCGAACAACCGAACAAGACCAACTCTGTTAACAACGACCTCTTTTGTCACGAACAACAAACCACGAGTACCCTTTCGAGTAATACCTCAAATTCAAACTCAAGTAGCCAAGTTGACAAAGTTTGGCCTCAAAACCACTTAGATTTTGGAGAGGAAGTGGAGAAGAAGAAAGAGAATAAGCAAATAAGGTCGGAATTGGAATTGGAATTGGAATTGGAATTGGAATCGGAATCAATTGAAATCCCGTTGGAATGGGACAAAGATTTTTGGAACATATTAGATTTAGAGGACATAGATTTGTTCGGATCTAACGAGGTAGATCAATATTACTGTCAAGCTTCGAACTTTGGAGCAGAAAAGAGGCAGGAATTCGAAAATGATAAGTGGTTTAAGTATTTGGAGAACGAGCTAGGATTGGAAGCCGATGGCTGCACCGGCCTCGACGATGTCACGGCGGCGGAGAGATTGCTAATGGACGACGTGGACCCTTGTATGGCTTATTTTGCAGATGGGTTGACTCAACAACTTCAGAGCTAA

Protein sequence

MRLLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNLRPSNETQDLETEQPNKTNSVNNDLFCHEQQTTSTLSSNTSNSNSSSQVDKVWPQNHLDFGEEVEKKKENKQIRSELELELELELESESIEIPLEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFENDKWFKYLENELGLEADGCTGLDDVTAAERLLMDDVDPCMAYFADGLTQQLQS

Homology

[Close]

BLAST of Carg03427 vs. NCBI nr
Match: XP_022943493.1 (transcription factor MYB63-like [Cucurbita moschata])

HSP 1 Score: 346.7 bits (888), Expect = 6.3e-92
Identity = 221/285 (77.54%), Postives = 223/285 (78.25%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNN----------------- 62
           LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN                  
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIK 107

Query: 63  ------------------------------------LRPSNETQDLETEQPNKTNSVNND 122
                                                RPSNETQDLETE+PNKTNSVNND
Sbjct: 108 NVWNTHLKKRLLKXXXXXXXXXXXXXXXXXXXXXXXXRPSNETQDLETERPNKTNSVNND 167

Query: 123 LFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXXXXXXXXX 182
           LFC EQQTTS+ XXXXXXXXXXXQVDKVWPQNHLDFGEEVE   XXXXXXXXXXXXXXXX
Sbjct: 168 LFCLEQQTTSSXXXXXXXXXXXXQVDKVWPQNHLDFGEEVE--KXXXXXXXXXXXXXXXX 227

Query: 183 XXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFENDKWFKYL 235
           XXXXXXXXX EWDKDFWNILDLEDIDLFGSNEVDQYYCQASNF AEKRQEFENDKWFKYL
Sbjct: 228 XXXXXXXXXLEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFEAEKRQEFENDKWFKYL 287

[Close]

BLAST of Carg03427 vs. NCBI nr
Match: XP_022986071.1 (transcription factor MYB63-like [Cucurbita maxima])

HSP 1 Score: 327.8 bits (839), Expect = 3.0e-86
Identity = 198/280 (70.71%), Postives = 201/280 (71.79%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNN----------------- 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGN                  
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTQDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIK 107

Query: 63  ------------------------------------LRPSNETQDLETEQPNKTNSVNND 122
                                               LR SNETQDLETEQPNKTN V +D
Sbjct: 108 NVWNTHLKKRLLNTATTKDCNEPKESLTTXXXXXXXLRLSNETQDLETEQPNKTNYVTSD 167

Query: 123 LFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXXXXXXXXX 182
           LFC EQQTTS+L           QVDKVWPQNHLDFGEEVE     XXXXXXXXXXXXXX
Sbjct: 168 LFCPEQQTTSSLSSNPSNSNSSSQVDKVWPQNHLDFGEEVE----KXXXXXXXXXXXXXX 227

Query: 183 XXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFENDKWFKYL 230
           XXXXXXXX  EWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFG EKRQEFENDKWFKYL
Sbjct: 228 XXXXXXXXPLEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGEEKRQEFENDKWFKYL 287

[Close]

BLAST of Carg03427 vs. NCBI nr
Match: XP_023511898.1 (transcription factor MYB63-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.8 bits (839), Expect = 3.0e-86
Identity = 186/283 (65.72%), Postives = 188/283 (66.43%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNN----------------- 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGN                  
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTQDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIK 107

Query: 63  ------------------------------------LRPSNETQDLETEQPNKTNSVNND 122
                                                R SNETQD E EQPNKTNSVNND
Sbjct: 108 NVWNTHLKKRLLKTTITKDCNEPKESPXXXXXXXXXXRLSNETQDFEPEQPNKTNSVNND 167

Query: 123 LFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXXXXXXXXX 182
           LFC EQQTTS+ XXXXXXXXXX QVDK WPQNHLDFGEEVE                   
Sbjct: 168 LFCPEQQTTSSXXXXXXXXXXXSQVDKFWPQNHLDFGEEVE--------KKKENKQIRSE 227

Query: 183 XXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFENDKWFKYL 233
                     EWDKDFWNILDLEDIDLF SNEVDQYYCQASNFG EK+QEFENDKWFKYL
Sbjct: 228 SELESIEIPLEWDKDFWNILDLEDIDLFESNEVDQYYCQASNFGTEKKQEFENDKWFKYL 287

[Close]

BLAST of Carg03427 vs. NCBI nr
Match: XP_022947599.1 (transcription factor MYB63-like [Cucurbita moschata])

HSP 1 Score: 216.5 bits (550), Expect = 9.8e-53
Identity = 138/285 (48.42%), Postives = 160/285 (56.14%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN------------------ 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGN                  
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTQDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIK 107

Query: 63  ---------NLRP----------------------------SNETQDLETEQPNKTNSVN 122
                     L P                            SNE Q+LETE  NK+N +N
Sbjct: 108 NVWNTHLKKRLLPTSKVSDXXXXXXXXXXXXXXXXXXXXXXSNENQNLETEPLNKSNPIN 167

Query: 123 NDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXXXXXXX 182
           ++L C +QQTTST            QV+  WPQN +DFGEEV+        XXXXXX   
Sbjct: 168 DNLVCSKQQTTST--SISSNSISSSQVEGCWPQNRVDFGEEVK-----EKKXXXXXXEMG 227

Query: 183 XXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFENDKWFK 233
                       E D +FW++LDL++I LF S+EVDQ +C+ SNF  +K QEFEN KWFK
Sbjct: 228 SKSNNMGIKIPLESDIEFWDMLDLDNIHLFESDEVDQSFCEGSNFVVQKNQEFENAKWFK 287

[Close]

BLAST of Carg03427 vs. NCBI nr
Match: KGN46804.1 (hypothetical protein Csa_6G136580 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 8.3e-52
Identity = 162/234 (69.23%), Postives = 171/234 (73.08%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNLRPSNETQDLETEQPNK 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGNNL  SN+TQ++ETEQ NK
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTEDEEETIIKLHKTWGNNLVSSNQTQNIETEQLNK 107

Query: 63  TNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXX 122
           TNS+N              XXXXXXXXXXX                  XXXXXXXXXXXX
Sbjct: 108 TNSIN------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 167

Query: 123 XXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFEN 182
           XXXXXXXXXXXXXXXXX      WN+LDL DIDLF SNEVDQ YCQ SNFGA+K Q+FEN
Sbjct: 168 XXXXXXXXXXXXXXXXXXXXXXXWNMLDL-DIDLFESNEVDQNYCQGSNFGAQKNQDFEN 227

Query: 183 DKWFKYLENELGL----EADGCTGLDDVTAAERLLMDDVDPCMAYFADGLTQQL 233
             WFKYLENELGL    E DG  G+DD T  +  L DDVDPCMAYFADG TQQL
Sbjct: 228 HMWFKYLENELGLNRPPEPDGRAGVDDTTTEDHRLEDDVDPCMAYFADGFTQQL 274

[Close]

BLAST of Carg03427 vs. TAIR10
Match: AT1G16490.1 (myb domain protein 58)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-19
Identity = 65/206 (31.55%), Postives = 92/206 (44.66%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNL---------RPSNETQ 62
           LLRCGKSCRLRWINYLRPDVKRGNF+ +EE+TIIKLH+++GN           R  NE +
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIK 107

Query: 63  DLETEQPNKTNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHL---DFGEEVE 122
           ++      K  S   +L   E  +  +L                +  +++   D   ++ 
Sbjct: 108 NVWHTHLKKRLSSETNLNADEAGSKGSLNEEENSQESSPNASMSFAGSNISSKDDDAQIS 167

Query: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQAS 182
                                        + D D W+ +D  D            + Q  
Sbjct: 168 QMFEHILTYSEFTGMLQEVDKPELLEMPFDLDPDIWSFIDGSD-----------SFQQPE 227

Query: 183 NFGAEKRQEFENDKWFKYLENELGLE 197
           N   ++ +E E DKWFK+LE+ELGLE
Sbjct: 228 NRALQESEEDEVDKWFKHLESELGLE 242

[Close]

BLAST of Carg03427 vs. TAIR10
Match: AT2G31180.1 (myb domain protein 14)

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-16
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFTP EE+TII LH++ GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDIKRGNFTPQEEQTIINLHESLGN 87

[Close]

BLAST of Carg03427 vs. TAIR10
Match: AT1G06180.1 (myb domain protein 13)

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-16
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFTP EE+TII LH+  GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDIKRGNFTPHEEDTIISLHQLLGN 87

[Close]

BLAST of Carg03427 vs. TAIR10
Match: AT1G79180.1 (myb domain protein 63)

HSP 1 Score: 81.3 bits (199), Expect = 9.0e-16
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNLRPSNETQDLETEQPNK 62
           LLRCGKSCRLRWINYLRPD+KRGNFT +EEETIIKLH  +G      N+   + ++ P +
Sbjct: 48  LLRCGKSCRLRWINYLRPDLKRGNFTSEEEETIIKLHHNYG------NKWSKIASQLPGR 107

Query: 63  T-NSVNNDLFCH 74
           T N + N    H
Sbjct: 108 TDNEIKNVWHTH 113

[Close]

BLAST of Carg03427 vs. TAIR10
Match: AT2G16720.1 (myb domain protein 7)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-15
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFT DE+E IIKLH   GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDLKRGNFTHDEDELIIKLHSLLGN 87

[Close]

BLAST of Carg03427 vs. Swiss-Prot
Match: sp|Q9SA47|MYB58_ARATH (Transcription factor MYB58 OS=Arabidopsis thaliana OX=3702 GN=MYB58 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.4e-18
Identity = 65/206 (31.55%), Postives = 92/206 (44.66%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNL---------RPSNETQ 62
           LLRCGKSCRLRWINYLRPDVKRGNF+ +EE+TIIKLH+++GN           R  NE +
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIK 107

Query: 63  DLETEQPNKTNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHL---DFGEEVE 122
           ++      K  S   +L   E  +  +L                +  +++   D   ++ 
Sbjct: 108 NVWHTHLKKRLSSETNLNADEAGSKGSLNEEENSQESSPNASMSFAGSNISSKDDDAQIS 167

Query: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQAS 182
                                        + D D W+ +D  D            + Q  
Sbjct: 168 QMFEHILTYSEFTGMLQEVDKPELLEMPFDLDPDIWSFIDGSD-----------SFQQPE 227

Query: 183 NFGAEKRQEFENDKWFKYLENELGLE 197
           N   ++ +E E DKWFK+LE+ELGLE
Sbjct: 228 NRALQESEEDEVDKWFKHLESELGLE 242

[Close]

BLAST of Carg03427 vs. Swiss-Prot
Match: sp|Q9SJX8|MYB14_ARATH (Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.3e-15
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFTP EE+TII LH++ GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDIKRGNFTPQEEQTIINLHESLGN 87

[Close]

BLAST of Carg03427 vs. Swiss-Prot
Match: sp|Q9LNC9|MYB13_ARATH (Transcription factor MYB13 OS=Arabidopsis thaliana OX=3702 GN=MYB13 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.5e-15
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFTP EE+TII LH+  GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDIKRGNFTPHEEDTIISLHQLLGN 87

[Close]

BLAST of Carg03427 vs. Swiss-Prot
Match: sp|Q6R0A6|MYB63_ARATH (Transcription factor MYB63 OS=Arabidopsis thaliana OX=3702 GN=MYB63 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNLRPSNETQDLETEQPNK 62
           LLRCGKSCRLRWINYLRPD+KRGNFT +EEETIIKLH  +G      N+   + ++ P +
Sbjct: 48  LLRCGKSCRLRWINYLRPDLKRGNFTSEEEETIIKLHHNYG------NKWSKIASQLPGR 107

Query: 63  T-NSVNNDLFCH 74
           T N + N    H
Sbjct: 108 TDNEIKNVWHTH 113

[Close]

BLAST of Carg03427 vs. Swiss-Prot
Match: sp|Q42379|MYB7_ARATH (Transcription factor MYB7 OS=Arabidopsis thaliana OX=3702 GN=MYB7 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-14
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 3  LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGN 45
          LLRCGKSCRLRWINYLRPD+KRGNFT DE+E IIKLH   GN
Sbjct: 46 LLRCGKSCRLRWINYLRPDLKRGNFTHDEDELIIKLHSLLGN 87

[Close]

BLAST of Carg03427 vs. TrEMBL
Match: tr|A0A0A0KD77|A0A0A0KD77_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136580 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.5e-52
Identity = 162/234 (69.23%), Postives = 171/234 (73.08%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNLRPSNETQDLETEQPNK 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGNNL  SN+TQ++ETEQ NK
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTEDEEETIIKLHKTWGNNLVSSNQTQNIETEQLNK 107

Query: 63  TNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXX 122
           TNS+N              XXXXXXXXXXX                  XXXXXXXXXXXX
Sbjct: 108 TNSIN------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 167

Query: 123 XXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFEN 182
           XXXXXXXXXXXXXXXXX      WN+LDL DIDLF SNEVDQ YCQ SNFGA+K Q+FEN
Sbjct: 168 XXXXXXXXXXXXXXXXXXXXXXXWNMLDL-DIDLFESNEVDQNYCQGSNFGAQKNQDFEN 227

Query: 183 DKWFKYLENELGL----EADGCTGLDDVTAAERLLMDDVDPCMAYFADGLTQQL 233
             WFKYLENELGL    E DG  G+DD T  +  L DDVDPCMAYFADG TQQL
Sbjct: 228 HMWFKYLENELGLNRPPEPDGRAGVDDTTTEDHRLEDDVDPCMAYFADGFTQQL 274

[Close]

BLAST of Carg03427 vs. TrEMBL
Match: tr|A0A1S3C3L5|A0A1S3C3L5_CUCME (myb-related protein Myb4 OS=Cucumis melo OX=3656 GN=LOC103496292 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.7e-43
Identity = 160/294 (54.42%), Postives = 170/294 (57.82%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNN----------------- 62
           LLRCGKSCRLRWINYLRPDVKRGNFT DEEETIIKLHKTWGN                  
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTEDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIK 107

Query: 63  -------------------------------------------LRPSNETQDLETEQPNK 122
                                                         SN+TQ++ETEQ NK
Sbjct: 108 NVWNTHLKKRLIPTTKVVSEDXXXXXXXXXXXXXXXXXXXXXXXXXSNQTQNIETEQLNK 167

Query: 123 TNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNHLDFGEEVEXXXXXXXXXXXX 182
           TNS+               XXXXXXXXXXX                  XXXXXXXXXXXX
Sbjct: 168 TNSI--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 227

Query: 183 XXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQYYCQASNFGAEKRQEFEN 233
           XXXXXXXXXXXXXXXXX      WN+LDL DIDLF SNEVDQ YCQ SNFG +K Q+FEN
Sbjct: 228 XXXXXXXXXXXXXXXXXXXXXXXWNMLDL-DIDLFESNEVDQNYCQGSNFGVQKNQDFEN 287

[Close]

BLAST of Carg03427 vs. TrEMBL
Match: tr|A0A068UZ54|A0A068UZ54_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00038580001 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 78/227 (34.36%), Postives = 103/227 (45.37%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNL---------RPSNETQ 62
           LLRCGKSCRLRWINYLRPDVKRGNFTP+EE+TII LH   GN           R  NE +
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTPEEEQTIINLHNALGNKWSKIASHLPGRTDNEIK 107

Query: 63  DL-ETEQPNKTNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDK-----VWP-----QNH 122
           ++  T    +    N+D  CH++  TS              +D+     + P      N 
Sbjct: 108 NVWNTHLKKRLVIGNDDANCHQKIETSNSFTSYSASPSPSSIDEQQEPCISPTHPNAPNL 167

Query: 123 LDFGEEVE----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDKDFWNILD-L 182
            +FG+  E                                       E D DFWN LD L
Sbjct: 168 ENFGQPAEETCSLDSCINSKASPEVRKTTTEEPKEMAQDGNTMEIPLEPDADFWNFLDGL 227

Query: 183 EDIDLFGSNEVDQYY--CQASNFGAEKRQE-FENDKWFKYLENELGL 196
           + +D     +  Q +   Q+SNFG  ++++  E  +W +YLENELGL
Sbjct: 228 DPMDKPTECQPQQEHGVSQSSNFGENQQEDVHEYKRWLRYLENELGL 274

[Close]

BLAST of Carg03427 vs. TrEMBL
Match: tr|A0A2R6QTC4|A0A2R6QTC4_ACTCH (Myb-related protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc33485 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.8e-17
Identity = 103/215 (47.91%), Postives = 127/215 (59.07%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNL---------RPSNETQ 62
           LLRCGKSCRLRWINYLRPDVKRG+FT +EEETIIKLH++ GN           R  NE +
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGHFTLEEEETIIKLHQSLGNRWSKIASSLPGRTDNEIK 107

Query: 63  DLETEQPNKTNSVNNDLFCHEQQTT-----STLXXXXXXXXXXXQVDKVWPQNHLDFGEE 122
           ++      K   V+ D    + + T     ++             ++K      ++ G+E
Sbjct: 108 NVWNTHLKKRALVHKDANYDKVELTKEFSRTSSSFSTSSFINMEVLEKKENTLTMENGDE 167

Query: 123 VE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEV---DQ 182
            + XXXXXXXXXXXXXXXXXXXXXXXX     E D DFW +LD  ++D F SNE    DQ
Sbjct: 168 PKXXXXXXXXXXXXXXXXXXXXXXXXXIEIPLESDIDFWEMLD--NLDPFKSNESQPHDQ 227

Query: 183 Y-YCQASNFGAE-KRQEFENDKWFKYLENELGLEA 198
           +   ++SN G E    E E  KW KYLENELGLEA
Sbjct: 228 FEVSKSSNLGEEDDHGEIEYRKWLKYLENELGLEA 260

[Close]

BLAST of Carg03427 vs. TrEMBL
Match: tr|A0A2R6QBR3|A0A2R6QBR3_ACTCH (Myb-related protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18836 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 107/216 (49.54%), Postives = 123/216 (56.94%), Query Frame = 0


Query: 3   LLRCGKSCRLRWINYLRPDVKRGNFTPDEEETIIKLHKTWGNNL---------RPSNETQ 62
           LLRCGKSCRLRWINYLRPDVKRGNFT  EEETIIKLH++ GN           R  NE +
Sbjct: 48  LLRCGKSCRLRWINYLRPDVKRGNFTQQEEETIIKLHQSLGNRWSKIASSLPGRTDNEIK 107

Query: 63  DLETEQPNKTNSVNNDLFCHEQQTTSTLXXXXXXXXXXXQVDKVWPQNH-------LDFG 122
           ++      K   VN D    + + T        XXXXXX ++    +             
Sbjct: 108 NVWNTHLKKRTLVNKDANYDKDELTREFSRNSSXXXXXXXINMEVLEKEDNTLTMXXXXX 167

Query: 123 EEVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDKDFWNILDLEDIDLFGSNEVDQY- 182
               XXXXXXXXXXXXXXXXXXXXXXXXXX   E D DFW +LD  ++D F SNE   + 
Sbjct: 168 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPWESDIDFWEMLD--NLDPFKSNESQPHE 227

Query: 183 ---YCQASNFGAE-KRQEFENDKWFKYLENELGLEA 198
                ++SN G E    E E  KW K LENELGLEA
Sbjct: 228 QLEVSKSSNLGEEDDHGEIEYRKWLKCLENELGLEA 261

The following BLAST results are available for this feature:

BLAST of Carg03427 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943493.1	6.3e-92	77.54	transcription factor MYB63-like [Cucurbita moschata]	[more]
XP_022986071.1	3.0e-86	70.71	transcription factor MYB63-like [Cucurbita maxima]	[more]
XP_023511898.1	3.0e-86	65.72	transcription factor MYB63-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947599.1	9.8e-53	48.42	transcription factor MYB63-like [Cucurbita moschata]	[more]
KGN46804.1	8.3e-52	69.23	hypothetical protein Csa_6G136580 [Cucumis sativus]	[more]

BLAST of Carg03427 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16490.1	3.0e-19	31.55	myb domain protein 58	[more]
AT2G31180.1	2.4e-16	83.33	myb domain protein 14	[more]
AT1G06180.1	5.3e-16	83.33	myb domain protein 13	[more]
AT1G79180.1	9.0e-16	56.94	myb domain protein 63	[more]
AT2G16720.1	2.6e-15	83.33	myb domain protein 7	[more]

BLAST of Carg03427 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SA47\|MYB58_ARATH	5.4e-18	31.55	Transcription factor MYB58 OS=Arabidopsis thaliana OX=3702 GN=MYB58 PE=2 SV=1	[more]
sp\|Q9SJX8\|MYB14_ARATH	4.3e-15	83.33	Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1	[more]
sp\|Q9LNC9\|MYB13_ARATH	9.5e-15	83.33	Transcription factor MYB13 OS=Arabidopsis thaliana OX=3702 GN=MYB13 PE=2 SV=1	[more]
sp\|Q6R0A6\|MYB63_ARATH	1.6e-14	56.94	Transcription factor MYB63 OS=Arabidopsis thaliana OX=3702 GN=MYB63 PE=2 SV=1	[more]
sp\|Q42379\|MYB7_ARATH	4.7e-14	83.33	Transcription factor MYB7 OS=Arabidopsis thaliana OX=3702 GN=MYB7 PE=1 SV=1	[more]

BLAST of Carg03427 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KD77\|A0A0A0KD77_CUCSA	5.5e-52	69.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136580 PE=4 SV=1	[more]
tr\|A0A1S3C3L5\|A0A1S3C3L5_CUCME	4.7e-43	54.42	myb-related protein Myb4 OS=Cucumis melo OX=3656 GN=LOC103496292 PE=4 SV=1	[more]
tr\|A0A068UZ54\|A0A068UZ54_COFCA	1.2e-17	34.36	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00038580001 PE=4 ...	[more]
tr\|A0A2R6QTC4\|A0A2R6QTC4_ACTCH	5.8e-17	47.91	Myb-related protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]
tr\|A0A2R6QBR3\|A0A2R6QBR3_ACTCH	3.7e-16	49.54	Myb-related protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03427-RA	Carg03427-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 2..24 e-value: 3.0E-5 score: 25.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..97
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 2..44
None	No IPR available	PANTHER	PTHR10641:SF923	SUBFAMILY NOT NAMED	coord: 2..44
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 1..22 score: 11.482
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 5..45

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03427	Cla013461	Watermelon (97103) v1	carwmB0330
Carg03427	Csa6G136580	Cucumber (Chinese Long) v2	carcuB0367
Carg03427	ClCG02G018620	Watermelon (Charleston Gray)	carwcgB0327
Carg03427	CmaCh02G000120	Cucurbita maxima (Rimu)	carcmaB0475
Carg03427	CmaCh20G002790	Cucurbita maxima (Rimu)	carcmaB0473
Carg03427	CmoCh20G003020	Cucurbita moschata (Rifu)	carcmoB0464
Carg03427	CmoCh02G000100	Cucurbita moschata (Rifu)	carcmoB0466
Carg03427	Cp4.1LG16g07120	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03427	Cp4.1LG05g15660	Cucurbita pepo (Zucchini)	carcpeB0479
Carg03427	CsGy6G011280	Cucumber (Gy14) v2	carcgybB0347
Carg03427	MELO3C034877.2	Melon (DHL92) v3.6.1	carmedB0347
Carg03427	Cla97C02G044520	Watermelon (97103) v2	carwmbB0346
Carg03427	Bhi10G000738	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03427	Carg13662	Silver-seed gourd	carcarB030

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03427	Silver-seed gourd	carcarB352
Carg03427	Silver-seed gourd	carcarB358
Carg03427	Cucumber (Gy14) v2	carcgybB0355
Carg03427	Cucumber (Gy14) v1	carcgyB0391
Carg03427	Cucumber (Gy14) v1	carcgyB0399
Carg03427	Cucurbita maxima (Rimu)	carcmaB0466
Carg03427	Cucurbita maxima (Rimu)	carcmaB0471
Carg03427	Cucurbita moschata (Rifu)	carcmoB0457
Carg03427	Cucurbita moschata (Rifu)	carcmoB0463
Carg03427	Cucurbita pepo (Zucchini)	carcpeB0464
Carg03427	Cucurbita pepo (Zucchini)	carcpeB0474
Carg03427	Wild cucumber (PI 183967)	carcpiB0370
Carg03427	Wild cucumber (PI 183967)	carcpiB0379
Carg03427	Cucumber (Chinese Long) v2	carcuB0376
Carg03427	Cucumber (Chinese Long) v3	carcucB0370
Carg03427	Cucumber (Chinese Long) v3	carcucB0380
Carg03427	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03427	Bottle gourd (USVL1VR-Ls)	carlsiB306
Carg03427	Melon (DHL92) v3.5.1	carmeB0339
Carg03427	Melon (DHL92) v3.5.1	carmeB0344
Carg03427	Melon (DHL92) v3.6.1	carmedB0350
Carg03427	Watermelon (Charleston Gray)	carwcgB0322
Carg03427	Watermelon (97103) v1	carwmB0320
Carg03427	Watermelon (97103) v2	carwmbB0355
Carg03427	Wax gourd	carwgoB0417