CsGy6G011280 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G011280
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionmyb-related protein Myb4
LocationChr6 : 9697709 .. 9698707 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGTTGCGTATGATTTGATATCACTTTATAATCACTTTAGCTCCTTGTTCTTTTTTTGTTTTATACCTAAAAAAAAATATATATTTCTTGTAGTTAATAACAAAAACATATTGATCCCAAAGAAGAGACATTTCAAACTCTATATATATATATAAACTAACTAGGGTTAAAACTGTTAAACTTTAGGTGCATGTATAATATTATAGTTTTAAATATTTGATCGACCATTCATTAAACAAATTATACATTTTTACAGGTGGTCTAAAATTGCATCTCGTTTGCCTGGAAGAACGGACAATGAGATCAAGAACGTTTGGAACACACATCTAAAGAAGAGATTATCACCGACAACAAAAGTTATTCTCGACGATTTTGGTGATGAACCAAAAGAGTCATCTTCGACAACTTCTTCCTCCTCTTTCTCCTCTTCCTCCAGTTTAGTCTCCTCCAATCAAACACAAAACATAGAGACAGAACAACTCAACAAGACCAACTCCATTAACAACAATAACAACCTCTTTTGTCTCAAACCAAAAGCAACCAGCTCTCTTTCTACTAACACTTCAAATTCAAATTCAAGTTGGCCTCAAAACCACTCTGATTTTGGAGAAGAAGTGGAGAAGAATAAAGAGAACCAACAATTGGAATTGGAATTGGAGTCAGAATCTCAATCAAACACTATGGAAATTGAAATCCCATTGGAATTTGACAAAGATTTTTGGAACATGTTAGATTTAGACATAGATTTGTTCGAATCTAACGAAGTAGATCAAAATTATTGTCAAGGTTCAAACTTTGGAGCACAAAAAAACCAAGATTTCGAAAATCACATGTGGTTTAAGTATTTGGAGAACGAGTTGGGGTTAAACCGGCCGCCTGAACCTGATGGTCGTGCCGGTGTCGACGACACGACCACAGAGGATCACAGGCTAGAGGATGATGTAGACCCTTGCATGGCTTATTTTGCAGATGGGTTCACTCAACAACTTTAG

mRNA sequence

ATGGATGATGTTGCTTGGCCTCAAAACCACTCTGATTTTGGAGAAGAAGTGGAGAAGAATAAAGAGAACCAACAATTGGAATTGGAATTGGAGTCAGAATCTCAATCAAACACTATGGAAATTGAAATCCCATTGGAATTTGACAAAGATTTTTGGAACATGTTAGATTTAGACATAGATTTGTTCGAATCTAACGAAGTAGATCAAAATTATTGTCAAGGTTCAAACTTTGGAGCACAAAAAAACCAAGATTTCGAAAATCACATGTGGTTTAAGTATTTGGAGAACGAGTTGGGGTTAAACCGGCCGCCTGAACCTGATGGTCGTGCCGGTGTCGACGACACGACCACAGAGGATCACAGGCTAGAGGATGATGTAGACCCTTGCATGGCTTATTTTGCAGATGGGTTCACTCAACAACTTTAG

Coding sequence (CDS)

ATGGATGATGTTGCTTGGCCTCAAAACCACTCTGATTTTGGAGAAGAAGTGGAGAAGAATAAAGAGAACCAACAATTGGAATTGGAATTGGAGTCAGAATCTCAATCAAACACTATGGAAATTGAAATCCCATTGGAATTTGACAAAGATTTTTGGAACATGTTAGATTTAGACATAGATTTGTTCGAATCTAACGAAGTAGATCAAAATTATTGTCAAGGTTCAAACTTTGGAGCACAAAAAAACCAAGATTTCGAAAATCACATGTGGTTTAAGTATTTGGAGAACGAGTTGGGGTTAAACCGGCCGCCTGAACCTGATGGTCGTGCCGGTGTCGACGACACGACCACAGAGGATCACAGGCTAGAGGATGATGTAGACCCTTGCATGGCTTATTTTGCAGATGGGTTCACTCAACAACTTTAG

Protein sequence

MDDVAWPQNHSDFGEEVEKNKENQQLELELESESQSNTMEIEIPLEFDKDFWNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAGVDDTTTEDHRLEDDVDPCMAYFADGFTQQL
Homology
[Close]
BLAST of CsGy6G011280 vs. NCBI nr
Match: XP_004140016.1 (PREDICTED: myb-related protein Myb4-like [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 52  WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG 111
           WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG
Sbjct: 245 WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG 304

Query: 112 VDDTTTEDHRLEDDVDPCMAYFADGFTQQL 142
           VDDTTTEDHRLEDDVDPCMAYFADGFTQQL
Sbjct: 305 VDDTTTEDHRLEDDVDPCMAYFADGFTQQL 334

[Close]
BLAST of CsGy6G011280 vs. NCBI nr
Match: KGN46804.1 (hypothetical protein Csa_6G136580 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 52  WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG 111
           WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG
Sbjct: 185 WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG 244

Query: 112 VDDTTTEDHRLEDDVDPCMAYFADGFTQQL 142
           VDDTTTEDHRLEDDVDPCMAYFADGFTQQL
Sbjct: 245 VDDTTTEDHRLEDDVDPCMAYFADGFTQQL 274

[Close]
BLAST of CsGy6G011280 vs. NCBI nr
Match: XP_008456304.1 (PREDICTED: myb-related protein Myb4 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 6.6e-44
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 52  WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG 111
           WNMLDLDIDLFESNEVDQNYCQGSNFG QKNQDFENH WFKYLENELGLNRPPEPDGRAG
Sbjct: 243 WNMLDLDIDLFESNEVDQNYCQGSNFGVQKNQDFENHKWFKYLENELGLNRPPEPDGRAG 302

Query: 112 VDDTTTEDHRLEDDVDPCMAYFADGFTQQL 142
           VDDTTTED  LED+VDPCMAYFADGFTQQL
Sbjct: 303 VDDTTTEDRLLEDNVDPCMAYFADGFTQQL 332

[Close]
BLAST of CsGy6G011280 vs. NCBI nr
Match: XP_022943493.1 (transcription factor MYB63-like [Cucurbita moschata])

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 101/140 (72.14%), Postives = 106/140 (75.71%), Query Frame = 0 

Query: 3   DVAWPQNHSDFGEEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWNMLDL-DIDL 62
           D  WPQNH DFGEEV  XXXXXXXXXXXXXXXXXXXXXXXXX       WN+LDL DIDL
Sbjct: 193 DKVWPQNHLDFGEEVEKXXXXXXXXXXXXXXXXXXXXXXXXXLEWDKDFWNILDLEDIDL 252

Query: 63  FESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAGVDDTTTEDHR 122
           F SNEVDQ YCQ SNF A+K Q+FEN  WFKYLENELGL    E DG  G+DD T  +  
Sbjct: 253 FGSNEVDQYYCQASNFEAEKRQEFENDKWFKYLENELGL----EADGCTGLDDVTAAERL 312

Query: 123 LEDDVDPCMAYFADGFTQQL 142
           L DDVDPCMAYFADG TQQL
Sbjct: 313 LMDDVDPCMAYFADGLTQQL 328

[Close]
BLAST of CsGy6G011280 vs. NCBI nr
Match: XP_023511898.1 (transcription factor MYB63-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 4.1e-30
Identity = 77/140 (55.00%), Postives = 81/140 (57.86%), Query Frame = 0 

Query: 3   DVAWPQNHSDFGEEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWNMLDL-DIDL 62
           D  WPQNH DFGEEV                                  WN+LDL DIDL
Sbjct: 193 DKFWPQNHLDFGEEV------EKKKENKQIRSESELESIEIPLEWDKDFWNILDLEDIDL 252

Query: 63  FESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAGVDDTTTEDHR 122
           FESNEVDQ YCQ SNFG +K Q+FEN  WFKYLENELGL    E DG  G DD T  +  
Sbjct: 253 FESNEVDQYYCQASNFGTEKKQEFENDKWFKYLENELGL----EADGCTGADDVTAAERL 312

Query: 123 LEDDVDPCMAYFADGFTQQL 142
           L DDVDPCMAYFADG TQQL
Sbjct: 313 LMDDVDPCMAYFADGLTQQL 322

[Close]
BLAST of CsGy6G011280 vs. TrEMBL
Match: tr|A0A0A0KD77|A0A0A0KD77_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136580 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.4e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 52  WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG 111
           WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG
Sbjct: 185 WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG 244

Query: 112 VDDTTTEDHRLEDDVDPCMAYFADGFTQQL 142
           VDDTTTEDHRLEDDVDPCMAYFADGFTQQL
Sbjct: 245 VDDTTTEDHRLEDDVDPCMAYFADGFTQQL 274

[Close]
BLAST of CsGy6G011280 vs. TrEMBL
Match: tr|A0A1S3C3L5|A0A1S3C3L5_CUCME (myb-related protein Myb4 OS=Cucumis melo OX=3656 GN=LOC103496292 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.3e-44
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 52  WNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAG 111
           WNMLDLDIDLFESNEVDQNYCQGSNFG QKNQDFENH WFKYLENELGLNRPPEPDGRAG
Sbjct: 243 WNMLDLDIDLFESNEVDQNYCQGSNFGVQKNQDFENHKWFKYLENELGLNRPPEPDGRAG 302

Query: 112 VDDTTTEDHRLEDDVDPCMAYFADGFTQQL 142
           VDDTTTED  LED+VDPCMAYFADGFTQQL
Sbjct: 303 VDDTTTEDRLLEDNVDPCMAYFADGFTQQL 332

The following BLAST results are available for this feature:
BLAST of CsGy6G011280 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140016.12.2e-47100.00PREDICTED: myb-related protein Myb4-like [Cucumis sativus][more]
KGN46804.12.2e-47100.00hypothetical protein Csa_6G136580 [Cucumis sativus][more]
XP_008456304.16.6e-4494.44PREDICTED: myb-related protein Myb4 [Cucumis melo][more]
XP_022943493.11.9e-3072.14transcription factor MYB63-like [Cucurbita moschata][more]
XP_023511898.14.1e-3055.00transcription factor MYB63-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy6G011280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G011280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G011280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KD77|A0A0A0KD77_CUCSA1.4e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136580 PE=4 SV=1[more]
tr|A0A1S3C3L5|A0A1S3C3L5_CUCME4.3e-4494.44myb-related protein Myb4 OS=Cucumis melo OX=3656 GN=LOC103496292 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G011280.1CsGy6G011280.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 16..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..120

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G011280Cla013461Watermelon (97103) v1cgybwmB489
CsGy6G011280Csa6G136580Cucumber (Chinese Long) v2cgybcuB282
CsGy6G011280MELO3C019641Melon (DHL92) v3.5.1cgybmeB368
CsGy6G011280ClCG02G018620Watermelon (Charleston Gray)cgybwcgB413
CsGy6G011280CSPI06G11150Wild cucumber (PI 183967)cgybcpiB288
CsGy6G011280CmoCh20G003020Cucurbita moschata (Rifu)cgybcmoB778
CsGy6G011280Lsi10G015200Bottle gourd (USVL1VR-Ls)cgyblsiB372
CsGy6G011280Cp4.1LG16g07120Cucurbita pepo (Zucchini)cgybcpeB756
CsGy6G011280MELO3C034877.2Melon (DHL92) v3.6.1cgybmedB383
CsGy6G011280CsaV3_6G013570Cucumber (Chinese Long) v3cgybcucB298
CsGy6G011280Cla97C02G044520Watermelon (97103) v2cgybwmbB419
CsGy6G011280Bhi10G000738Wax gourdcgybwgoB569
CsGy6G011280Carg03427Silver-seed gourdcarcgybB0347
CsGy6G011280Carg13662Silver-seed gourdcarcgybB0031
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G011280Cucumber (Gy14) v2cgybcgybB155
CsGy6G011280Cucurbita maxima (Rimu)cgybcmaB711
CsGy6G011280Cucurbita maxima (Rimu)cgybcmaB783
CsGy6G011280Cucurbita maxima (Rimu)cgybcmaB800
CsGy6G011280Cucurbita moschata (Rifu)cgybcmoB695
CsGy6G011280Cucurbita moschata (Rifu)cgybcmoB762
CsGy6G011280Cucurbita pepo (Zucchini)cgybcpeB750
CsGy6G011280Cucurbita pepo (Zucchini)cgybcpeB843
CsGy6G011280Cucumber (Chinese Long) v2cgybcuB290
CsGy6G011280Bottle gourd (USVL1VR-Ls)cgyblsiB390
CsGy6G011280Melon (DHL92) v3.5.1cgybmeB400
CsGy6G011280Melon (DHL92) v3.6.1cgybmedB399
CsGy6G011280Watermelon (Charleston Gray)cgybwcgB387
CsGy6G011280Watermelon (97103) v1cgybwmB418
CsGy6G011280Wild cucumber (PI 183967)cgybcpiB296
CsGy6G011280Silver-seed gourdcarcgybB0400
CsGy6G011280Silver-seed gourdcarcgybB0537
CsGy6G011280Cucumber (Chinese Long) v3cgybcucB307
CsGy6G011280Watermelon (97103) v2cgybwmbB485
CsGy6G011280Wax gourdcgybwgoB537