Carg03426 (gene) Silver-seed gourd

Overview
NameCarg03426
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionrRNA methyltransferase
LocationCucurbita_argyrosperma_scaffold_005 : 1787870 .. 1789880 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCTTTGAAATTTGGGTACAAATGGGTAGCGGTTGCTGCTGCCTCCGAACCAGTCGTAGGACGTCAAAGACATTTGAGAAATCTTTGCTGCTTATCTAATCGTATTTACTCAAATGGGATATCGTCCGAGTATCAGAGTGATTTCTCTTCACCGTCGTCGTCGTCGTCGTCGTCGAAAGATTTTTCGTCTCTAGAAGGTTACATTTTCATTTTGTTGTGCTTAAATCTCCACATTTTCTTGTTAGATTATCATTTACCAACATAATATTCGTTTTAGGGGTTTTGATTTTGATTATTGTTAATGTTGTTGTTGTTTTTGTAATAATTTCTATTGAAATTTTATGTGCTGTTGTGAAATTGTGCATGATGCGATAATAGGATTGGAGGATGTCATGGTTGGCTACCTTTTTGGGAAGAAGAGAGCGACAGAAGTTGCTCACTCGTATGTATTTGCATCATCAGCTAACTTTTTTTTGTGCATTTTTACATGTGCTGGTATGGCTGTATGTTTTCTATTGTTTTCAGGCCTTTGTTCTTCACTGGCCTCTGTTTTTCAATGCAATGGTCTCTATTGAGCTGTATGATCATTAGGCTCAAACGTATGCCTTGAGACTTTCCAAACTTTGCTTGCTTTCTAGCTGTTGTTCTAGATATTAATTACCTTGTCTTTTATCAATCAGTGTATGGAAACGTGTCATCAGAACAGGGGATACAGTGGTAGATGCTACTTGTGGAAATGGGTATGATACTCTAGCTATGCTCAAAATGGTTGCTGACGAAGCTGGTTCTGCGCGTGTTTATGCAATGGACGTTCAGAAAGAGGCTTTAGAAAGCACTTCTGCGCTACTGGATGAGTCGCTTAGTGAAAAAGAGGTATCCTTTGGTTTATCTCATAACTTGCTCCAATCAGTGGCCTACAGCCTAAAATTGTAATTACGATAGTCTAAAGCTTCTTTTGCATAACAATATATGCTGATTGGATGTGATCCAATTATTTGCGAGTTTGAGGTTGTAGCAACCCAAGCCCACCACTAGTAGATATTGTTTGCTTTGGCCCGTTATGTATCGCCGTCAGCCTCACGGTTTTAAAGCGCATCAGCTAGGGATAGGTTTCCACACCCTTAAAAGAAATGTTTCGTTCTTCTTTCCAACCGATGTAGGATCTCACAATCCACCTCCCTTAGGGCCTGGCTTCCTCGCTGGCACACCACTCAGTGTCTGGCTCTGATACCATTTGTAACAGTTGAAGCCTACCGCTAGTAGATATTGTCCGCTTTGGCCTGTTACGTATCGTCGTGAGCCTCACGGTTTTAAAACGCGTCAGCTGGAGAGATGTTTCCACACCCTTTTAAGGAATGTTTCATTCCCCTCTCCAACGTATGGGGATCTCACAATCCACCCCCTTGGAGGCCCAACGTCCTTGCTAGCACACCGTCTGGTGTCTGGTTTTGTAACACCGGGTGGTGTGGAAAGCTTTTAACGTTTATTTTTGTCAGTTCACTTTCAAAAAATGGGGATCAATCGATGACTTTACCTTCTGATTTGTGTAGTTAATCTTTGAACAATTGTTCAATTGCTTATATTTTCCAGTTTTATGTAGAGAAAACTTGTTAAACTCTCCTCCATTTGCCACAGCAGAATGGAAGATGTCATTCCAGAGGGTTCTCCCGTTAGGTAATGATTCCACATTTTGTGCTTAGTAATGACACATTTGTCATTTTAATTGATACCTATCCTTTTTTGCATTTTTTCGCTACCATATAAGAAAGTTGAAGAACAAGAAAGAATTCAAATAAATTAATTATCTGTGATTAGATATACCAGTTAATGCTGCTCTATTTCTTAGGCTTGTTGCATTTAACCTTGGCTACCTACCTGGTGGTAACAAAGCAATCACTACAAAGTCAGAAACTACATTACAAGCACTTGAAGCTGCCTATAGAATTCTGAAACCTGGAGGGCTCATCAGCCTTGTGGTTTATGTGGGGCATCCTGGTGGACTGTAA

mRNA sequence

ATGTTATCTTTGAAATTTGGGTACAAATGGGTAGCGGTTGCTGCTGCCTCCGAACCAGTCGTAGGACGTCAAAGACATTTGAGAAATCTTTGCTGCTTATCTAATCGTATTTACTCAAATGGGATATCGTCCGAGTATCAGAGTGATTTCTCTTCACCGTCGTCGTCGTCGTCGTCGTCGAAAGATTTTTCGTCTCTAGAAGGATTGGAGGATGTCATGGTTGGCTACCTTTTTGGGAAGAAGAGAGCGACAGAAGTTGCTCACTCGTATGCCTTTGTTCTTCACTGGCCTCTGTTTTTCAATGCAATGGTCTCTATTGAGCTTGTATGGAAACGTGTCATCAGAACAGGGGATACAGTGGTAGATGCTACTTGTGGAAATGGGTATGATACTCTAGCTATGCTCAAAATGGTTGCTGACGAAGCTGGTTCTGCGCGTGTTTATGCAATGGACGTTCAGAAAGAGGCTTTAGAAAGCACTTCTGCGCTACTGGATGAGTCGCTTAGTGAAAAAGAGAGAAAACTTGTTAAACTCTCCTCCATTTGCCACAGCAGAATGGAAGATGTCATTCCAGAGGGTTCTCCCGTTAGGCTTGTTGCATTTAACCTTGGCTACCTACCTGGTGGTAACAAAGCAATCACTACAAAGTCAGAAACTACATTACAAGCACTTGAAGCTGCCTATAGAATTCTGAAACCTGGAGGGCTCATCAGCCTTGTGGTTTATGTGGGGCATCCTGGTGGACTGTAA

Coding sequence (CDS)

ATGTTATCTTTGAAATTTGGGTACAAATGGGTAGCGGTTGCTGCTGCCTCCGAACCAGTCGTAGGACGTCAAAGACATTTGAGAAATCTTTGCTGCTTATCTAATCGTATTTACTCAAATGGGATATCGTCCGAGTATCAGAGTGATTTCTCTTCACCGTCGTCGTCGTCGTCGTCGTCGAAAGATTTTTCGTCTCTAGAAGGATTGGAGGATGTCATGGTTGGCTACCTTTTTGGGAAGAAGAGAGCGACAGAAGTTGCTCACTCGTATGCCTTTGTTCTTCACTGGCCTCTGTTTTTCAATGCAATGGTCTCTATTGAGCTTGTATGGAAACGTGTCATCAGAACAGGGGATACAGTGGTAGATGCTACTTGTGGAAATGGGTATGATACTCTAGCTATGCTCAAAATGGTTGCTGACGAAGCTGGTTCTGCGCGTGTTTATGCAATGGACGTTCAGAAAGAGGCTTTAGAAAGCACTTCTGCGCTACTGGATGAGTCGCTTAGTGAAAAAGAGAGAAAACTTGTTAAACTCTCCTCCATTTGCCACAGCAGAATGGAAGATGTCATTCCAGAGGGTTCTCCCGTTAGGCTTGTTGCATTTAACCTTGGCTACCTACCTGGTGGTAACAAAGCAATCACTACAAAGTCAGAAACTACATTACAAGCACTTGAAGCTGCCTATAGAATTCTGAAACCTGGAGGGCTCATCAGCCTTGTGGTTTATGTGGGGCATCCTGGTGGACTGTAA

Protein sequence

MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCCLSNRIYSNGISSEYQSDFSSPSSSSSSSKDFSSLEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTVVDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSSICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLVVYVGHPGGL
Homology
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BLAST of Carg03426 vs. NCBI nr
Match: XP_022943494.1 (uncharacterized protein LOC111448248 [Cucurbita moschata])

HSP 1 Score: 402.5 bits (1033), Expect = 1.0e-108
Identity = 224/249 (89.96%), Postives = 225/249 (90.36%), Query Frame = 0 

Query: 1   MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCCLSNRIYSNGISSEYQSDXXXXXXXXXXX 60
           MLSLKFGYKWVAVAAASEPVVGRQRHLRN CC SNRI+SNGISSEYQSD XXXXXXXXXX
Sbjct: 1   MLSLKFGYKWVAVAAASEPVVGRQRHLRNFCCFSNRIHSNGISSEYQSDFXXXXXXXXXX 60

Query: 61  XXFSSLEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTV 120
           XXFSSLEGLEDVMVGYLFGKKRATEVAHS                   VWKRVIRTGDTV
Sbjct: 61  XXFSSLEGLEDVMVGYLFGKKRATEVAHS-------------------VWKRVIRTGDTV 120

Query: 121 VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSS 180
           VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALES SALLDESL EKERKLVKLSS
Sbjct: 121 VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESASALLDESLCEKERKLVKLSS 180

Query: 181 ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLV 240
           ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLV
Sbjct: 181 ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLV 230

Query: 241 VYVGHPGGL 250
           VYVGHPGGL
Sbjct: 241 VYVGHPGGL 230

[Close]
BLAST of Carg03426 vs. NCBI nr
Match: XP_022986072.1 (uncharacterized protein LOC111483929 [Cucurbita maxima])

HSP 1 Score: 399.8 bits (1026), Expect = 6.7e-108
Identity = 213/249 (85.54%), Postives = 215/249 (86.35%), Query Frame = 0 

Query: 1   MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCCLSNRIYSNGISSEYQSDXXXXXXXXXXX 60
           MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCC SNRI+SNGISSEYQ+            
Sbjct: 1   MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCCFSNRIHSNGISSEYQT---YFSSPSSSS 60

Query: 61  XXFSSLEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTV 120
             FSSLEGLEDVMVGYLFGKKRATEVAHS                   VWKRVIRTGDTV
Sbjct: 61  KDFSSLEGLEDVMVGYLFGKKRATEVAHS-------------------VWKRVIRTGDTV 120

Query: 121 VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSS 180
           VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSS
Sbjct: 121 VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSS 180

Query: 181 ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLV 240
           ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLV
Sbjct: 181 ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLV 227

Query: 241 VYVGHPGGL 250
           VYVGHPGGL
Sbjct: 241 VYVGHPGGL 227

[Close]
BLAST of Carg03426 vs. NCBI nr
Match: XP_023511899.1 (uncharacterized protein LOC111776775 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.4 bits (1025), Expect = 8.7e-108
Identity = 212/249 (85.14%), Postives = 215/249 (86.35%), Query Frame = 0 

Query: 1   MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCCLSNRIYSNGISSEYQSDXXXXXXXXXXX 60
           MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCC SNRI+SNGISSEYQSD           
Sbjct: 1   MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCCFSNRIHSNGISSEYQSD---FSSPSSSS 60

Query: 61  XXFSSLEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTV 120
             FSSLEGLEDVMVGYLFGKKRATEVAHS                   VWKRVIRTGDTV
Sbjct: 61  KDFSSLEGLEDVMVGYLFGKKRATEVAHS-------------------VWKRVIRTGDTV 120

Query: 121 VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSS 180
           VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESL +KERKLVKLSS
Sbjct: 121 VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLCKKERKLVKLSS 180

Query: 181 ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLV 240
           ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYR+LKPGGLISLV
Sbjct: 181 ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRLLKPGGLISLV 227

Query: 241 VYVGHPGGL 250
           VYVGHPGGL
Sbjct: 241 VYVGHPGGL 227

[Close]
BLAST of Carg03426 vs. NCBI nr
Match: XP_004139901.1 (PREDICTED: uncharacterized protein LOC101214958 isoform X1 [Cucumis sativus] >KGN46802.1 hypothetical protein Csa_6G136560 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 1.4e-92
Identity = 188/249 (75.50%), Postives = 200/249 (80.32%), Query Frame = 0 

Query: 1   MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCCLSNRIYSNGISSEYQSDXXXXXXXXXXX 60
           MLSLKFG KWVAV A SE VVGRQRHLR+LCC SNRI SNG+SS+YQ D           
Sbjct: 1   MLSLKFGSKWVAV-ATSESVVGRQRHLRDLCCFSNRIQSNGLSSQYQIDFNSPLSSKHSL 60

Query: 61  XXFSSLEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTV 120
               SLEGLEDVMVGY FGKKRATEVAHS                   VWK +++ GDTV
Sbjct: 61  ----SLEGLEDVMVGYFFGKKRATEVAHS-------------------VWKCIVKKGDTV 120

Query: 121 VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSS 180
           VDATCGNGYDTLAM+KMVADE+GSARVYAMDVQ EALESTSALLDESLSEKE+KLVKLSS
Sbjct: 121 VDATCGNGYDTLAMVKMVADESGSARVYAMDVQNEALESTSALLDESLSEKEKKLVKLSS 180

Query: 181 ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLV 240
           ICHSRMEDVI E SPV LVAFNLGYLPGGNKAITTKSETT QAL+AA+RILKPGGLISLV
Sbjct: 181 ICHSRMEDVILEDSPVSLVAFNLGYLPGGNKAITTKSETTFQALKAAHRILKPGGLISLV 225

Query: 241 VYVGHPGGL 250
           VYVGHPGG+
Sbjct: 241 VYVGHPGGM 225

[Close]
BLAST of Carg03426 vs. NCBI nr
Match: XP_011656977.1 (PREDICTED: uncharacterized protein LOC101214958 isoform X2 [Cucumis sativus])

HSP 1 Score: 343.6 bits (880), Expect = 5.7e-91
Identity = 188/249 (75.50%), Postives = 199/249 (79.92%), Query Frame = 0 

Query: 1   MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCCLSNRIYSNGISSEYQSDXXXXXXXXXXX 60
           MLSLKFG KWVAV A SE VVGRQRHLR+LCC SNRI SNG+SS+YQ D           
Sbjct: 1   MLSLKFGSKWVAV-ATSESVVGRQRHLRDLCCFSNRIQSNGLSSQYQIDFNSPLSSKHSL 60

Query: 61  XXFSSLEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTV 120
               SLEGLEDVMVGY FGKKRATEVAHS                   VWK +++ GDTV
Sbjct: 61  ----SLEGLEDVMVGYFFGKKRATEVAHS-------------------VWKCIVKKGDTV 120

Query: 121 VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSS 180
           VDATCGNGYDTLAM+KMVADE+GSARVYAMDVQ EALESTSALLDESLSEKE KLVKLSS
Sbjct: 121 VDATCGNGYDTLAMVKMVADESGSARVYAMDVQNEALESTSALLDESLSEKE-KLVKLSS 180

Query: 181 ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLV 240
           ICHSRMEDVI E SPV LVAFNLGYLPGGNKAITTKSETT QAL+AA+RILKPGGLISLV
Sbjct: 181 ICHSRMEDVILEDSPVSLVAFNLGYLPGGNKAITTKSETTFQALKAAHRILKPGGLISLV 224

Query: 241 VYVGHPGGL 250
           VYVGHPGG+
Sbjct: 241 VYVGHPGGM 224

[Close]
BLAST of Carg03426 vs. TAIR10
Match: AT1G16445.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 223.0 bits (567), Expect = 2.0e-58
Identity = 114/185 (61.62%), Postives = 143/185 (77.30%), Query Frame = 0 

Query: 66  LEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTVVDATC 125
           + GLEDV VGYLFG+K+ATEVAH                   +VW++VI+ GDTV+DATC
Sbjct: 66  IRGLEDVFVGYLFGRKKATEVAH-------------------VVWEQVIQKGDTVIDATC 125

Query: 126 GNGYDTLAMLKMVA-DEAG-SARVYAMDVQKEALESTSALLDESLSEKERKLVKLSSICH 185
           GNG DTLAMLKMV  D  G    VYAMD+QK+A+ESTS+LLD+++  KE++ VKL ++CH
Sbjct: 126 GNGNDTLAMLKMVMHDSVGCGGYVYAMDIQKDAIESTSSLLDQAVGSKEKECVKLFNLCH 185

Query: 186 SRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLVVYV 245
           S+M +++PE + VR+VAFNLGYLPGGNK+I T S+TTL AL+AA RILKPGGLISLVVY+
Sbjct: 186 SKMGEIVPENARVRMVAFNLGYLPGGNKSIITLSDTTLSALKAAERILKPGGLISLVVYI 231

Query: 246 GHPGG 249
           GHPGG
Sbjct: 246 GHPGG 231

[Close]
BLAST of Carg03426 vs. Swiss-Prot
Match: sp|O34614|YTQB_BACSU (Putative rRNA methylase YtqB OS=Bacillus subtilis (strain 168) OX=224308 GN=ytqB PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-18
Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 0 

Query: 117 GDTVVDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLV 176
           GD VVDAT GNG+DT  + ++V +   +  VYA D+Q+ A+ +T     E L +  +   
Sbjct: 21  GDIVVDATMGNGHDTQFLAELVGE---NGHVYAFDIQESAVANTK----ERLGDMYQART 80

Query: 177 KLSSICHSRMEDVIPEGSPVRLVA--FNLGYLPGGNKAITTKSETTLQALEAAYRILKPG 236
            L    H ++ + +P  +  ++ A  FNLGYLPGG+K+ITT   +T++A+E    I+K  
Sbjct: 81  TLFHKSHDKIAESLPPETHGKVAAAVFNLGYLPGGDKSITTNGSSTIKAIEQLLSIMKDE 140

Query: 237 GLISLVVYVGHPGG 249
           GLI LVVY GHP G
Sbjct: 141 GLIVLVVYHGHPEG 147

[Close]
BLAST of Carg03426 vs. TrEMBL
Match: tr|A0A0A0KEF8|A0A0A0KEF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136560 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 8.9e-93
Identity = 188/249 (75.50%), Postives = 200/249 (80.32%), Query Frame = 0 

Query: 1   MLSLKFGYKWVAVAAASEPVVGRQRHLRNLCCLSNRIYSNGISSEYQSDXXXXXXXXXXX 60
           MLSLKFG KWVAV A SE VVGRQRHLR+LCC SNRI SNG+SS+YQ D           
Sbjct: 1   MLSLKFGSKWVAV-ATSESVVGRQRHLRDLCCFSNRIQSNGLSSQYQIDFNSPLSSKHSL 60

Query: 61  XXFSSLEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTV 120
               SLEGLEDVMVGY FGKKRATEVAHS                   VWK +++ GDTV
Sbjct: 61  ----SLEGLEDVMVGYFFGKKRATEVAHS-------------------VWKCIVKKGDTV 120

Query: 121 VDATCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSS 180
           VDATCGNGYDTLAM+KMVADE+GSARVYAMDVQ EALESTSALLDESLSEKE+KLVKLSS
Sbjct: 121 VDATCGNGYDTLAMVKMVADESGSARVYAMDVQNEALESTSALLDESLSEKEKKLVKLSS 180

Query: 181 ICHSRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLV 240
           ICHSRMEDVI E SPV LVAFNLGYLPGGNKAITTKSETT QAL+AA+RILKPGGLISLV
Sbjct: 181 ICHSRMEDVILEDSPVSLVAFNLGYLPGGNKAITTKSETTFQALKAAHRILKPGGLISLV 225

Query: 241 VYVGHPGGL 250
           VYVGHPGG+
Sbjct: 241 VYVGHPGGM 225

[Close]
BLAST of Carg03426 vs. TrEMBL
Match: tr|A0A2C9VRS7|A0A2C9VRS7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G175800 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.3e-63
Identity = 124/185 (67.03%), Postives = 151/185 (81.62%), Query Frame = 0 

Query: 64  SSLEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTVVDA 123
           S L GLED +VGY+ GKK+ATEVAH                   LVWK V++ GDTV+DA
Sbjct: 80  SPLTGLEDDLVGYVLGKKKATEVAH-------------------LVWKHVVQKGDTVIDA 139

Query: 124 TCGNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSSICH 183
           TCGNGYDTLAMLKMVADE+G+ARVY MD+Q++ALE+TS+LLDE+++ KE++LVKL SICH
Sbjct: 140 TCGNGYDTLAMLKMVADESGTARVYGMDIQRDALENTSSLLDENVTPKEKQLVKLFSICH 199

Query: 184 SRMEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLVVYV 243
           SR+E++IPE SPVRLVAFNLGYLPGG+KA+TT  ETT+ A+E+A R+L PGGLISLVVYV
Sbjct: 200 SRIEEIIPENSPVRLVAFNLGYLPGGDKALTTVPETTMMAIESAKRVLVPGGLISLVVYV 245

Query: 244 GHPGG 249
           GHPGG
Sbjct: 260 GHPGG 245

[Close]
BLAST of Carg03426 vs. TrEMBL
Match: tr|A0A2K1ZQG7|A0A2K1ZQG7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G069400v3 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.9e-61
Identity = 123/184 (66.85%), Postives = 145/184 (78.80%), Query Frame = 0 

Query: 66  LEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTVVDATC 125
           L G E+ +VGY+FGKK+ATEVAH                   L+WKRV++ GDTV+DATC
Sbjct: 56  LSGAEEDLVGYVFGKKKATEVAH-------------------LIWKRVVQNGDTVIDATC 115

Query: 126 GNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSSICHSR 185
           GNGYDTLAMLKMVADE G  RVY MD+Q +AL+ TS+LLDES++ KE++LVKL SICHSR
Sbjct: 116 GNGYDTLAMLKMVADELGRGRVYGMDIQGDALKRTSSLLDESVTLKEKELVKLFSICHSR 175

Query: 186 MEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLVVYVGH 245
           ME+++P  SPVRLVAFNLGYLPGG+K ITT SETT  ALEAA +IL PGGLISLVVYVGH
Sbjct: 176 MEEIVPANSPVRLVAFNLGYLPGGDKTITTASETTQLALEAAKKILIPGGLISLVVYVGH 220

Query: 246 PGGL 250
           PGG+
Sbjct: 236 PGGM 220

[Close]
BLAST of Carg03426 vs. TrEMBL
Match: tr|A0A2K1ZQF9|A0A2K1ZQF9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G069400v3 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.9e-61
Identity = 123/184 (66.85%), Postives = 145/184 (78.80%), Query Frame = 0 

Query: 66  LEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTVVDATC 125
           L G E+ +VGY+FGKK+ATEVAH                   L+WKRV++ GDTV+DATC
Sbjct: 56  LSGAEEDLVGYVFGKKKATEVAH-------------------LIWKRVVQNGDTVIDATC 115

Query: 126 GNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSSICHSR 185
           GNGYDTLAMLKMVADE G  RVY MD+Q +AL+ TS+LLDES++ KE++LVKL SICHSR
Sbjct: 116 GNGYDTLAMLKMVADELGRGRVYGMDIQGDALKRTSSLLDESVTLKEKELVKLFSICHSR 175

Query: 186 MEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLVVYVGH 245
           ME+++P  SPVRLVAFNLGYLPGG+K ITT SETT  ALEAA +IL PGGLISLVVYVGH
Sbjct: 176 MEEIVPANSPVRLVAFNLGYLPGGDKTITTASETTQLALEAAKKILIPGGLISLVVYVGH 220

Query: 246 PGGL 250
           PGG+
Sbjct: 236 PGGM 220

[Close]
BLAST of Carg03426 vs. TrEMBL
Match: tr|A0A2K1ZQG2|A0A2K1ZQG2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G069400v3 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.9e-61
Identity = 123/184 (66.85%), Postives = 145/184 (78.80%), Query Frame = 0 

Query: 66  LEGLEDVMVGYLFGKKRATEVAHSYAFVLHWPLFFNAMVSIELVWKRVIRTGDTVVDATC 125
           L G E+ +VGY+FGKK+ATEVAH                   L+WKRV++ GDTV+DATC
Sbjct: 56  LSGAEEDLVGYVFGKKKATEVAH-------------------LIWKRVVQNGDTVIDATC 115

Query: 126 GNGYDTLAMLKMVADEAGSARVYAMDVQKEALESTSALLDESLSEKERKLVKLSSICHSR 185
           GNGYDTLAMLKMVADE G  RVY MD+Q +AL+ TS+LLDES++ KE++LVKL SICHSR
Sbjct: 116 GNGYDTLAMLKMVADELGRGRVYGMDIQGDALKRTSSLLDESVTLKEKELVKLFSICHSR 175

Query: 186 MEDVIPEGSPVRLVAFNLGYLPGGNKAITTKSETTLQALEAAYRILKPGGLISLVVYVGH 245
           ME+++P  SPVRLVAFNLGYLPGG+K ITT SETT  ALEAA +IL PGGLISLVVYVGH
Sbjct: 176 MEEIVPANSPVRLVAFNLGYLPGGDKTITTASETTQLALEAAKKILIPGGLISLVVYVGH 220

Query: 246 PGGL 250
           PGG+
Sbjct: 236 PGGM 220

The following BLAST results are available for this feature:
BLAST of Carg03426 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022943494.11.0e-10889.96uncharacterized protein LOC111448248 [Cucurbita moschata][more]
XP_022986072.16.7e-10885.54uncharacterized protein LOC111483929 [Cucurbita maxima][more]
XP_023511899.18.7e-10885.14uncharacterized protein LOC111776775 [Cucurbita pepo subsp. pepo][more]
XP_004139901.11.4e-9275.50PREDICTED: uncharacterized protein LOC101214958 isoform X1 [Cucumis sativus] >KG... [more]
XP_011656977.15.7e-9175.50PREDICTED: uncharacterized protein LOC101214958 isoform X2 [Cucumis sativus][more]
BLAST of Carg03426 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16445.12.0e-5861.62S-adenosyl-L-methionine-dependent methyltransferases superfamily protein[more]
BLAST of Carg03426 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O34614|YTQB_BACSU1.2e-1841.04Putative rRNA methylase YtqB OS=Bacillus subtilis (strain 168) OX=224308 GN=ytqB... [more]
BLAST of Carg03426 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KEF8|A0A0A0KEF8_CUCSA8.9e-9375.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136560 PE=4 SV=1[more]
tr|A0A2C9VRS7|A0A2C9VRS7_MANES4.3e-6367.03Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G175800 PE=4 SV=... [more]
tr|A0A2K1ZQG7|A0A2K1ZQG7_POPTR6.9e-6166.85Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G069400v3 PE=... [more]
tr|A0A2K1ZQF9|A0A2K1ZQF9_POPTR6.9e-6166.85Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G069400v3 PE=... [more]
tr|A0A2K1ZQG2|A0A2K1ZQG2_POPTR6.9e-6166.85Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G069400v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR010719rRNA_methylase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03426-RACarg03426-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.150coord: 101..249
e-value: 1.4E-47
score: 163.5
NoneNo IPR availableCDDcd02440AdoMet_MTasescoord: 119..244
e-value: 2.71893E-5
score: 40.1059
IPR010719Putative rRNA methylasePFAMPF06962rRNA_methylasecoord: 147..248
e-value: 3.0E-33
score: 114.6
IPR010719Putative rRNA methylasePANTHERPTHR35276FAMILY NOT NAMEDcoord: 108..248
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILYSSF53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 112..246

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03426Cla013460Watermelon (97103) v1carwmB0330
Carg03426Csa6G136560Cucumber (Chinese Long) v2carcuB0367
Carg03426MELO3C019639Melon (DHL92) v3.5.1carmeB0339
Carg03426ClCG02G018630Watermelon (Charleston Gray)carwcgB0327
Carg03426CSPI06G11120Wild cucumber (PI 183967)carcpiB0370
Carg03426Cucsa.118480Cucumber (Gy14) v1carcgyB0391
Carg03426CmaCh20G002800Cucurbita maxima (Rimu)carcmaB0473
Carg03426CmoCh20G003030Cucurbita moschata (Rifu)carcmoB0464
Carg03426Lsi10G015180Bottle gourd (USVL1VR-Ls)carlsiB303
Carg03426Cp4.1LG16g07050Cucurbita pepo (Zucchini)carcpeB0465
Carg03426CsGy6G011260Cucumber (Gy14) v2carcgybB0347
Carg03426MELO3C019639.2Melon (DHL92) v3.6.1carmedB0347
Carg03426CsaV3_6G013550Cucumber (Chinese Long) v3carcucB0370
Carg03426Cla97C02G044550Watermelon (97103) v2carwmbB0346
Carg03426Bhi10G000737Wax gourdcarwgoB0419
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg03426Bottle gourd (USVL1VR-Ls)carlsiB306
Carg03426Melon (DHL92) v3.5.1carmeB0344
Carg03426Melon (DHL92) v3.6.1carmedB0350
Carg03426Watermelon (Charleston Gray)carwcgB0322
Carg03426Watermelon (97103) v1carwmB0320
Carg03426Watermelon (97103) v2carwmbB0355
Carg03426Wax gourdcarwgoB0417
Carg03426Silver-seed gourdcarcarB352
Carg03426Silver-seed gourdcarcarB358
Carg03426Cucumber (Gy14) v2carcgybB0355
Carg03426Cucumber (Gy14) v1carcgyB0399
Carg03426Cucurbita maxima (Rimu)carcmaB0466
Carg03426Cucurbita maxima (Rimu)carcmaB0471
Carg03426Cucurbita moschata (Rifu)carcmoB0457
Carg03426Cucurbita moschata (Rifu)carcmoB0463
Carg03426Cucurbita pepo (Zucchini)carcpeB0464
Carg03426Cucurbita pepo (Zucchini)carcpeB0474
Carg03426Wild cucumber (PI 183967)carcpiB0379
Carg03426Cucumber (Chinese Long) v2carcuB0376
Carg03426Cucumber (Chinese Long) v3carcucB0380