Carg23316 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23316
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP-dependent RNA helicase
Location	Cucurbita_argyrosperma_scaffold_188 : 289514 .. 294546 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATCACGGATTTGGACCGGACATTCGTAAGTTTATTGGCCCATTAAAGCATCGTGCCTCGTCACATGATGGCCAAGGATTTCAAACAATATTGATCACTGCAACAATGACAAAGGTATTGGTTTCAATGTGACAGAAGTATTTTGTTTTTCCCTGTTGAGATCATATTTTTCTTTGAATCTGTATGGATTGATAATTTGGATGTTAGAAAATTCGAAGGTAGGCATGTTGAACCTGATGGAACCCTTCTTTATAATTGTTTTTGTGAGATCCTACATTGGTTGGGGAGGAGAACGTAGCACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTATAAACCTTGAGGGGAAGCCTGAAAGGAAAAGCCCAAAGAGGATAATATCTGCTAGCGGTGTGCTTGAGATGTTATAAATGGTATCAGAGCCAGACACCGGACAATGTGCTAGCGAGGAAGTTGAACTCCGGGGATGGACATGAGGCAGTGTGCCAGCATGGACCTTGGGCCCCGAAAGGGGTGGACTAGAGGGTCCCACATCGATTAGAGAAAGGAACGAGTGCCAGCGAGGACGCTAGGCCCCGAAAGGGGTGGATTGTGAGATCTCACATTGGTTGGGGAGGAGAATGAAGCACCCTTTGTAAGGGTTTGGAAACCTCTCCCTAGCAAACGCATTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTATAAATGGAATCAGAGCCAAACACAGGACGATGTGCTAGCAACGAAGTTGAGCCCCGAAGGGGATGGACATGAGGCGGTGTGCCAGCAAGGACCCTGGGCCTCGAAAGGGGGTGGACTGGAGGGTCCCACATCAATTAGAGAAAGGAACGAGTGCCAGCGAGGACATTGGGCCCCGAAAGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGAAGAACGAAACACCCTTTATAAGGGTGTGAAAACCTTTCCCTAGCAGACACATTTTAAAAACCTTGAGAGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCTATTACAGTTTCGGTAGAAGGATGTTAAATGTTCTTTGAATACTTCGACAATCGGTTCTATATGCGAGATCAGTTTCCTTTTCTAGTCAATAGTCATTCGATTTAATTTACAATTTCAGCATTTGTCGTTTCATTATACACTTCGGTTGTTAAAATTCTTCCGCTCATACGTTCTGGCCATCGCTGCAGGCAGTTCAAAAGCTGATTGATGAGGAGTTTCAGGGCATTGTGCATTTACGCACATCAACTTTGCATAAAAAGATCGCATCCGCTCGTCATGATTTCATCAAGCTTTCAGGTTCTGAAAACAAGATGGAAGCTTTATTGCAGGTTTGACTATTGTATTTATTTCTTGGGTACTTCTTAGTCCATTATGAACGCTCTGACATATATTAGCTTAGATTCTTAGACCATTATCTCCTTATTTCCATGAAGTTCGTGGTTTCGTTGTTTCATATCGTCATGGTCATGGCTTGGTCGTTAAAAAGTTCTAGGAGTCTCAATACAAGTAACTTCCAATGCCTGGGCTGTTAAACTGCCAAGCCATGCCATGACCATGAAGTTTTTAACCTCCCACCTGGCAAGGTTTTGAAATTTAACATATGGAACTGAGCTTGTGCATCCATGAGTTTCACCTTTCCTATTTACCATGGGAAGAATTTCAATGATTTCACCTCAAGTAATTACTTCCTTTTGAGTTTGAAAGAAGTATAAGATTGATTCTCAACTATTTTTTGCATTGCCATTTGTCTCAAATCCCTCCCCCTTGTTAAGTTACTAATAGGATAACAGACTGATCTTCCCCGACTACTATTCGTGACTGATTGAACGAGATAAAGCATATGAAATCCTGTAAACTCCTCTCCTTTACTTTATAGTCTATCAGCTTCTTCCTTCCCTTCCTCCTTACGAGAAGTTGTTGTCACGAGAGCTCCAGAACCTTATACTCTATTACCTGACATTCCCTACCTTGACTGCTATCCGAGATTGATTGAACAAGGTAAAGCATATGAAATCCTGTAAACGCCCCTCCTTTACTTAACAGTCTTATCAGCTTCTTCCTTCCATTCCTTCTTACAAGAAGTGGTTGACACGAGAGCTTCTGAACTTTATACTCTAATACCTGACCTTCCCCTATTTACCTTATGAATTAAATCCTGAACCTATTTATTCTTCTTCTTTTGAGGAAGGTTTATGGAAGGAAAGACGAAAGAAAGATTACCCTAATTTTCTTACAAGAATCCCCAACTAAATGATGATAATTCCTTGTTTACGAGATTCAGGAGAGAAATAAGGAATTGGAGAATATGTAAGACCCATAAGTGAAGGAAGGACGTAATCTCAGCCGTGAGAGAAGGGGTTTTCTTAGTTTCCATTTGCTCGACATGTTTGACTTCAGGCCGCAAATGGATTCTATGCACTATGCTTACTTAGAGGCAGAAAAACATTTTTCGTCAATGAAGGACCTATGTAGACGGACATTCATAGTGCATGAAAAAGTACTTTTAAGCACCTAGAAAGTCATTCCAAGCAGACTCTAACTTTCCAAGCGGACTCTAACTTATTGAGACGGAGACAGATAAATCTAGTAGTTGATACACAAAGCAATAAGGAAAGAAATCAACCAGCTAAATCCTTACTAAAAAATGCATGAACCTAAACAGCAGGAAGTCTTAAGCATCACATTATCATCTTTAGATTATTGGACTGTCTATTGGGCTTCATATTTGTTATTTTGTGAGGATGCAGGTTCTTGAACCAAGTTTGGCAAAAGGAAACAGGATAATGGTGTTCTGTAACACTTTAAATTCCAGCCGTGCCGTGGATCATTTTCTCGGTGAAAATCAAATTTCTACGGTCAATTACCACGGAGAGGTGCCTGCTCAGCAGCGGTAAGGATTTTGGTGATAAACTCCGTTTCATTTTTATAAAATTTACTCTACTTAGTGACAATCAATGAAGTTACAAAGAGCTGCAGTGACTCGGATCGAAAAACTGAAAAGAACGAGTAGATACAAAAAGATTGTTGGTTCTAAGTAATCCAAGATTTTGATATATGCGTTTATACTGTCGTTTGAAAATCAGAGTCGAGAATCTCAAGAAGTTCAAGAGTGATGATGCTGATTGTCCGACGTTAGTCTGCACGGACTTGGCCGCTAGGGGCTTGGATTTGGATGTGGATCATGTCATTATGTTTGATTTCCCTTCAAATTCTGTAAGAGTTTTTTTTGCTTTTGAAGAACTTGGCTTGTTATTTTGCACCACCTCTTTTTGTGCTGCACTTTCATGCCTAAATAGCTTATAAATGATATTTTGTTTCGCCTTTTAGATCGATTACCTTCATCGCACGGGAAGAACAGCTCGTATGGGTGCAAAAGGTTCGTCGCTTGCTCTTTGATGTACTTGATGTTTATAACTCTTTATTTCACATGGATTTTATGCTGTCCATTTGTTGGGTAACTAGGAAGGAAAATCCTTGAGCCTAGCATCCTAATTTTCTACTGAAATAGAGCTGCTACCATATACATGACGTGACTTTTTTATGCGGAAACATTCATTTAAAATCATTCATCGTTACATCGAGCATCAGCTGTGGGACCATGGAACATGTTAAGCCTACCTCGTAGGCTAGTTCACAGAATCTATGACTTAGAGCTCTGATACCATATTCATGACGTGACCTTTTTATGCGGAAACATTCATTAAAATCATTTATCCTTACATCGAGCATTATCTGTGAGACCATGGAACATGTTAAGCCTACCTCGTAGGCTAGTCCACATAATCTATAACACCATATGCATGATGTGACTTTTTTATGCGGAAACATTCATTTAAAATCATTTATCGTTACATCAAGCATCAGCTGTGGGACCATGGAACATGTTAAGCCTACCTCGTAGGCTAGTCCACATAATCTATAACACCATATGCATGATGTGACTTTTTTATGCGGAAACATTCATTTAAAATCATTCATCGTTACATCGAGCATCAGCTGTGGGACCATGGAGCATGTTAAGCCTACCTCGTAGGCTAGTCCAGATGATCTATAACCTAGAGCTCTGATACCAACTGTAACAACCTTAATTTTCTACTGGAATAGAGCCGCTACCATATGCATGATGTAATTGTTTTATGAATTATTTTAAATGAATGTTTTTGTATAAGAAGATTACGTCATGCATATGGTAGCGGCTCTATTTCAGTAGAAAATTAAGGTCGTTACAAGAAGTATCCTCATCCAACCATTACTACTTGTAGCTAGCCGTTATTCGTTGATTCACTTACTCACGAACTTGTATCTTAACTCGCAGCTTAGCCTGACTTGTACAAGCTAGGTTGAATTTGATGAAATTGAACTTCCTTGCTGATCCTTCATTATTTGTACATGTATTGGTGTAGGAAATGTGACAAGCCTGGTTACTAAAAAGGATAATATTTTAGCCACTCGCATCGAGGAAGCAATCCGAAAAAACGAGAGCTTAGAATCTCTCACAGCAGATAATGTGCGAAGAGACATAGCACGGGAACGTATGATAACCGAGCAGAAAACGAAAAATGAAAAATTTGTTAAGGTTTCAAAGGAGAGAAACAGAGCTAAATCATCAACATCACCAGCAGCAAAACCTTCAAGTGTCCATTCAAAAGATGAATCTGGAAAAGCATCTCCAGCAAAGACTCAGAAGTCCGGTGTTCGGGTTTCTAAGTCAACAAAACCGTCGAGGAACGTCCCCAGAAAACCGTTGAGGAATGTCCCCAGAAAACCGTCTTCCGAACCCAGGAAACCGTCTTCCGAACCGAAGAAGCAGGTGGCTAGCAGAAGGCAGCCCAGAAATGGCATCAAACCGTCAGGTCAGAAACTAAATGTAGTTGGGTTTAGAGGGAGAAGCAGCCAGTCTGATAAGAGAAGATCAGTATCCGGTTAA

mRNA sequence

ATGTTTGATCACGGATTTGGACCGGACATTCGTAAGTTTATTGGCCCATTAAAGCATCGTGCCTCGTCACATGATGGCCAAGGATTTCAAACAATATTGATCACTGCAACAATGACAAAGGCAGTTCAAAAGCTGATTGATGAGGAGTTTCAGGGCATTGTGCATTTACGCACATCAACTTTGCATAAAAAGATCGCATCCGCTCGTCATGATTTCATCAAGCTTTCAGGTTCTGAAAACAAGATGGAAGCTTTATTGCAGGTTCTTGAACCAAGTTTGGCAAAAGGAAACAGGATAATGGTGTTCTGTAACACTTTAAATTCCAGCCGTGCCGTGGATCATTTTCTCGGTGAAAATCAAATTTCTACGGTCAATTACCACGGAGAGGTGCCTGCTCAGCAGCGAGTCGAGAATCTCAAGAAGTTCAAGAGTGATGATGCTGATTGTCCGACGTTAGTCTGCACGGACTTGGCCGCTAGGGGCTTGGATTTGGATGTGGATCATGTCATTATGTTTGATTTCCCTTCAAATTCTATCGATTACCTTCATCGCACGGGAAGAACAGCTCGTATGGGTGCAAAAGGAAATGTGACAAGCCTGGTTACTAAAAAGGATAATATTTTAGCCACTCGCATCGAGGAAGCAATCCGAAAAAACGAGAGCTTAGAATCTCTCACAGCAGATAATGTGCGAAGAGACATAGCACGGGAACGTATGATAACCGAGCAGAAAACGAAAAATGAAAAATTTGTTAAGGTTTCAAAGGAGAGAAACAGAGCTAAATCATCAACATCACCAGCAGCAAAACCTTCAAGTGTCCATTCAAAAGATGAATCTGGAAAAGCATCTCCAGCAAAGACTCAGAAGTCCGGTGTTCGGGTTTCTAAGTCAACAAAACCGTCGAGGAACGTCCCCAGAAAACCGTTGAGGAATGTCCCCAGAAAACCGTCTTCCGAACCCAGGAAACCGTCTTCCGAACCGAAGAAGCAGGTGGCTAGCAGAAGGCAGCCCAGAAATGGCATCAAACCGTCAGGTCAGAAACTAAATGTAGTTGGGTTTAGAGGGAGAAGCAGCCAGTCTGATAAGAGAAGATCAGTATCCGGTTAA

Coding sequence (CDS)

ATGTTTGATCACGGATTTGGACCGGACATTCGTAAGTTTATTGGCCCATTAAAGCATCGTGCCTCGTCACATGATGGCCAAGGATTTCAAACAATATTGATCACTGCAACAATGACAAAGGCAGTTCAAAAGCTGATTGATGAGGAGTTTCAGGGCATTGTGCATTTACGCACATCAACTTTGCATAAAAAGATCGCATCCGCTCGTCATGATTTCATCAAGCTTTCAGGTTCTGAAAACAAGATGGAAGCTTTATTGCAGGTTCTTGAACCAAGTTTGGCAAAAGGAAACAGGATAATGGTGTTCTGTAACACTTTAAATTCCAGCCGTGCCGTGGATCATTTTCTCGGTGAAAATCAAATTTCTACGGTCAATTACCACGGAGAGGTGCCTGCTCAGCAGCGAGTCGAGAATCTCAAGAAGTTCAAGAGTGATGATGCTGATTGTCCGACGTTAGTCTGCACGGACTTGGCCGCTAGGGGCTTGGATTTGGATGTGGATCATGTCATTATGTTTGATTTCCCTTCAAATTCTATCGATTACCTTCATCGCACGGGAAGAACAGCTCGTATGGGTGCAAAAGGAAATGTGACAAGCCTGGTTACTAAAAAGGATAATATTTTAGCCACTCGCATCGAGGAAGCAATCCGAAAAAACGAGAGCTTAGAATCTCTCACAGCAGATAATGTGCGAAGAGACATAGCACGGGAACGTATGATAACCGAGCAGAAAACGAAAAATGAAAAATTTGTTAAGGTTTCAAAGGAGAGAAACAGAGCTAAATCATCAACATCACCAGCAGCAAAACCTTCAAGTGTCCATTCAAAAGATGAATCTGGAAAAGCATCTCCAGCAAAGACTCAGAAGTCCGGTGTTCGGGTTTCTAAGTCAACAAAACCGTCGAGGAACGTCCCCAGAAAACCGTTGAGGAATGTCCCCAGAAAACCGTCTTCCGAACCCAGGAAACCGTCTTCCGAACCGAAGAAGCAGGTGGCTAGCAGAAGGCAGCCCAGAAATGGCATCAAACCGTCAGGTCAGAAACTAAATGTAGTTGGGTTTAGAGGGAGAAGCAGCCAGTCTGATAAGAGAAGATCAGTATCCGGTTAA

Protein sequence

MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMITEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKPSRNVPRKPLRNVPRKPSSEPRKPSSEPKKQVASRRQPRNGIKPSGQKLNVVGFRGRSSQSDKRRSVSG

Homology

[Close]

BLAST of Carg23316 vs. NCBI nr
Match: XP_022936776.1 (DEAD-box ATP-dependent RNA helicase 39 isoform X1 [Cucurbita moschata])

HSP 1 Score: 644.0 bits (1660), Expect = 3.0e-181
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 275 MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ
Sbjct: 335 LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 395 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI
Sbjct: 455 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 514

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 300
           TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP
Sbjct: 515 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 574

Query: 301 SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 360
           SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS
Sbjct: 575 SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 634

Query: 361 DKRRSVSG 369
           DKRRSVSG
Sbjct: 635 DKRRSVSG 642

[Close]

BLAST of Carg23316 vs. NCBI nr
Match: XP_022936777.1 (DEAD-box ATP-dependent RNA helicase 39 isoform X2 [Cucurbita moschata])

HSP 1 Score: 635.6 bits (1638), Expect = 1.1e-178
Identity = 342/368 (92.93%), Postives = 342/368 (92.93%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 275 MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ
Sbjct: 335 LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 395 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI
Sbjct: 455 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 514

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 300
           TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP
Sbjct: 515 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 574

Query: 301 SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 360
           SRN             SSE             SRRQPRNGIKPSGQKLNVVGFRGRSSQS
Sbjct: 575 SRN--------VPRKPSSE-------PKKQVASRRQPRNGIKPSGQKLNVVGFRGRSSQS 627

Query: 361 DKRRSVSG 369
           DKRRSVSG
Sbjct: 635 DKRRSVSG 627

[Close]

BLAST of Carg23316 vs. NCBI nr
Match: XP_022976914.1 (DEAD-box ATP-dependent RNA helicase 39 [Cucurbita maxima])

HSP 1 Score: 606.7 bits (1563), Expect = 5.3e-170
Identity = 332/369 (89.97%), Postives = 335/369 (90.79%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 275 MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFLGENQ
Sbjct: 335 LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 395 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKGNVTSLVTKKD+ILATRIEEAIRKNESLESLTADNVRRDIAR+RMI
Sbjct: 455 YLHRTGRTARMGAKGNVTSLVTKKDHILATRIEEAIRKNESLESLTADNVRRDIARDRMI 514

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKA-SPAKTQKSGVRVSKSTK 300
           TEQK KNEK VKVSKER RAKSSTS AAKPSSVHSKDESGKA SP KTQKSGVRVSK TK
Sbjct: 515 TEQKMKNEKLVKVSKERTRAKSSTS-AAKPSSVHSKDESGKASSPVKTQKSGVRVSKLTK 574

Query: 301 PSRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQ 360
           PSRN             SSE             SRRQ RNGIKPSGQKLNVVGFRGRSSQ
Sbjct: 575 PSRN--------VPRKPSSE-------PKKQVTSRRQSRNGIKPSGQKLNVVGFRGRSSQ 627

Query: 361 SDKRRSVSG 369
           SDKRRSVSG
Sbjct: 635 SDKRRSVSG 627

[Close]

BLAST of Carg23316 vs. NCBI nr
Match: XP_023536046.1 (DEAD-box ATP-dependent RNA helicase 39 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 547.4 bits (1409), Expect = 3.8e-152
Identity = 323/368 (87.77%), Postives = 329/368 (89.40%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 275 MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFLGENQ
Sbjct: 335 LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 395 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKGNVTSLVTKKD+ILATRIEEAI+KNESLESLTADNVRRDIAR+RMI
Sbjct: 455 YLHRTGRTARMGAKGNVTSLVTKKDHILATRIEEAIQKNESLESLTADNVRRDIARDRMI 514

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 300
           TEQKTKN+KFVKVSKERNRAKSST+                                   
Sbjct: 515 TEQKTKNDKFVKVSKERNRAKSSTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 574

Query: 301 SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 360
              XXXXXXXXXXXXX SEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS
Sbjct: 575 XXXXXXXXXXXXXXXXXSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 634

Query: 361 DKRRSVSG 369
           DKRRSVSG
Sbjct: 635 DKRRSVSG 642

[Close]

BLAST of Carg23316 vs. NCBI nr
Match: XP_008461901.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo])

HSP 1 Score: 531.6 bits (1368), Expect = 2.2e-147
Identity = 298/368 (80.98%), Postives = 314/368 (85.33%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHD QGFQTIL+TATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 283 MFDHGFGPDIRKFIGPLKHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTST 342

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENK+EALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFLGENQ
Sbjct: 343 LHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQ 402

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQ+RVENLKKFKSDD DCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 403 ISTVNYHGEVPAQKRVENLKKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 462

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD+ILATRIEEAI+KNESLESLTAD+VRRDIAR+R I
Sbjct: 463 YLHRTGRTARMGAKGKVTSLVGKKDDILATRIEEAIQKNESLESLTADSVRRDIARDR-I 522

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKAS-PAKTQKSGVRVSKSTK 300
           TE KTKN K +K S   +RAKS+TS A K SSVHSK E+GKAS   +TQK GV VSK  K
Sbjct: 523 TEHKTKNAKLIKAS-TGSRAKSATS-APKSSSVHSKGETGKASYSERTQKPGVPVSKLVK 582

Query: 301 PSRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQ 360
            SRN             SSE             SRR+P + IK SGQKLNVVGFRGRS+Q
Sbjct: 583 SSRN--------IPRKPSSE-------TKKQVASRRRPGSAIKSSGQKLNVVGFRGRSNQ 632

Query: 361 SDKRRSVS 368
            DKRRSVS
Sbjct: 643 FDKRRSVS 632

[Close]

BLAST of Carg23316 vs. TAIR10
Match: AT4G09730.1 (RH39)

HSP 1 Score: 404.8 bits (1039), Expect = 5.6e-113
Identity = 203/259 (78.38%), Postives = 231/259 (89.19%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFD GFGP+IRKF+ PL  RA   + QGFQT+L+TATMT AVQKL+DEEFQGI HLRTST
Sbjct: 275 MFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIA+ARHDFIKLSG E+K+EALLQVLEPSLAKG+++MVFCNTLNSSRAVDH+L ENQ
Sbjct: 335 LHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA+QRVENLKKFK ++ DCPTLVCTDLAARGLDLDVDHV+MFDFP NSID
Sbjct: 395 ISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV++KD +LA RIEEA+R NESLESLT DNVRRD AR   I
Sbjct: 455 YLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTH-I 514

Query: 241 TEQKTKNEKFVK-VSKERN 259
           T++K ++ K ++ VSK+RN
Sbjct: 515 TQEKGRSVKQIREVSKQRN 532

[Close]

BLAST of Carg23316 vs. TAIR10
Match: AT1G59990.1 (DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 99.0 bits (245), Expect = 6.5e-21
Identity = 66/201 (32.84%), Postives = 105/201 (52.24%), Query Frame = 0


Query: 30  QTILITATM----TKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKMEAL 89
           Q I I AT+     K    ++   FQ  V +  + LH+     +  +++++  +++++AL
Sbjct: 354 QYIFIAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVT-VDSQVDAL 413

Query: 90  LQ-VLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQQRVENLKKFKS 149
           ++ V   +     R MVF NT+ +  AV   L +  I    YH      +R   L  F+ 
Sbjct: 414 IEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE 473

Query: 150 DDADCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGNVTSLVTK 209
                   VCTD AARG+D+ +V HVI  DF S+++D+LHR GRTAR G  G VTSL T+
Sbjct: 474 TGG---VFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTE 533

Query: 210 KDNILATRIEEAIRKNESLES 225
            +  L   I EA++  + +E+
Sbjct: 534 ANRDLVEAIREAVKMGQPVET 550

[Close]

BLAST of Carg23316 vs. TAIR10
Match: AT3G58570.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-18
Identity = 65/226 (28.76%), Postives = 106/226 (46.90%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           M D GF P IRK +  +            QT+L +AT  + +Q+L  +     + L    
Sbjct: 310 MLDMGFEPQIRKIVQQMDMPPPGVR----QTMLFSATFPREIQRLASDFLSNYIFLAVGR 369

Query: 61  LHKK--IASARHDFIKLSGSENKMEALLQVLEPSLAKGNR-----IMVFCNTLNSSRAVD 120
           +     +   R +F+      +K   L+ +L      GN+      +VF  T   + +++
Sbjct: 370 VGSSTDLIVQRVEFVH---DSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLE 429

Query: 121 HFLGENQISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMF 180
           ++L  N       HG+   Q+R   L+ FK+     P LV TD+AARGLD+  V HV+ F
Sbjct: 430 NWLCINGFPATTIHGDRSQQEREVALRSFKT--GRTPILVATDVAARGLDIPHVAHVVNF 489

Query: 181 DFPSNSIDYLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRK 219
           D P++  DY+HR GRT R G  G  T+     +  +A  + E +++
Sbjct: 490 DLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQE 526

[Close]

BLAST of Carg23316 vs. TAIR10
Match: AT3G01540.2 (DEAD box RNA helicase 1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-18
Identity = 62/211 (29.38%), Postives = 104/211 (49.29%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           M D GF P IRK +  +  +         QT++ TAT  K V+K+  +       +    
Sbjct: 316 MLDMGFEPQIRKIVKEIPTKR--------QTLMYTATWPKGVRKIAADLLVNPAQVNIGN 375

Query: 61  LHKKIAS---ARH-DFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFL 120
           + + +A+    +H + +     + ++E +L+  EP    G+++++FC+T      +   L
Sbjct: 376 VDELVANKSITQHIEVVAPMEKQRRLEQILRSQEP----GSKVIIFCSTKRMCDQLTRNL 435

Query: 121 GENQISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFP 180
              Q      HG+    +R   L +F+S     P LV TD+AARGLD+ D+  V+ +DFP
Sbjct: 436 -TRQFGAAAIHGDKSQPERDNVLNQFRS--GRTPVLVATDVAARGLDVKDIRAVVNYDFP 495

Query: 181 SNSIDYLHRTGRTARMGAKGNVTSLVTKKDN 207
           +   DY+HR GRT R GA G   +    +D+
Sbjct: 496 NGVEDYVHRIGRTGRAGATGQAFTFFGDQDS 511

[Close]

BLAST of Carg23316 vs. TAIR10
Match: AT3G06480.1 (DEAD box RNA helicase family protein)

HSP 1 Score: 89.4 bits (220), Expect = 5.2e-18
Identity = 66/209 (31.58%), Postives = 104/209 (49.76%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           M D GF P IRK +  +  R         QT++ TAT  K V+K+  +     V +    
Sbjct: 593 MLDMGFEPQIRKIVNEIPPRR--------QTLMYTATWPKEVRKIASDLLVNPVQVNIGR 652

Query: 61  LHKKIAS-ARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGE- 120
           + +  A+ A   ++++     K   L Q+L  S  +G+++++FC+T    R  DH     
Sbjct: 653 VDELAANKAITQYVEVVPQMEKERRLEQILR-SQERGSKVIIFCST---KRLCDHLARSV 712

Query: 121 -NQISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFPS 180
                 V  HG+    +R   L +F+S  + C  L+ TD+AARGLD+ D+  VI +DFP+
Sbjct: 713 GRHFGAVVIHGDKTQGERDWVLNQFRSGKS-C-VLIATDVAARGLDIKDIRVVINYDFPT 772

Query: 181 NSIDYLHRTGRTARMGAKGNVTSLVTKKD 206
              DY+HR GRT    A G   +  T++D
Sbjct: 773 GVEDYVHRIGRTGXXXATGVAFTFFTEQD 787

[Close]

BLAST of Carg23316 vs. Swiss-Prot
Match: sp|Q56X76|RH39_ARATH (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2)

HSP 1 Score: 404.8 bits (1039), Expect = 1.0e-111
Identity = 203/259 (78.38%), Postives = 231/259 (89.19%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFD GFGP+IRKF+ PL  RA   + QGFQT+L+TATMT AVQKL+DEEFQGI HLRTST
Sbjct: 275 MFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIA+ARHDFIKLSG E+K+EALLQVLEPSLAKG+++MVFCNTLNSSRAVDH+L ENQ
Sbjct: 335 LHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA+QRVENLKKFK ++ DCPTLVCTDLAARGLDLDVDHV+MFDFP NSID
Sbjct: 395 ISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV++KD +LA RIEEA+R NESLESLT DNVRRD AR   I
Sbjct: 455 YLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTH-I 514

Query: 241 TEQKTKNEKFVK-VSKERN 259
           T++K ++ K ++ VSK+RN
Sbjct: 515 TQEKGRSVKQIREVSKQRN 532

[Close]

BLAST of Carg23316 vs. Swiss-Prot
Match: sp|Q5VRY0|RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 5.2e-108
Identity = 244/378 (64.55%), Postives = 280/378 (74.07%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFD GFGPDIRKF+ PLK+RA+    QGFQT+L+TATMTKAVQKLIDEEF+GIVHLRT+T
Sbjct: 273 MFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTT 332

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
             K++A+ARHDFIKLSGSENK+EALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQ
Sbjct: 333 FQKRVATARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQ 392

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA++RVENL KF++++ DCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 393 ISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 452

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD  LATRIEEA++KNESLE+LT +NVRR     +  
Sbjct: 453 YLHRTGRTARMGAKGKVTSLVAKKDVTLATRIEEAMKKNESLEALTTNNVRRAAVNPQY- 512

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 300
                                  TS   +PS++   ++ G+   A   KS  R+ K T  
Sbjct: 513 -----------------------TSTKGRPSALKVVNQKGRRGVALQTKSS-RIVKDTTS 572

Query: 301 SR---------NXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPR----NGIKPSGQK 360
           SR           XXXXXXXXXXXX   XXXXXXXXXX   SR +P     + +   G K
Sbjct: 573 SRRRSPIRSQPRSXXXXXXXXXXXXXXXXXXXXXXXXXVAKSRPRPEGRKGDALNKLGSK 625

Query: 361 LNVVGFRGRSSQSDKRRS 366
           L+VVGFRGRSS    + S
Sbjct: 633 LSVVGFRGRSSGKSAQAS 625

[Close]

BLAST of Carg23316 vs. Swiss-Prot
Match: sp|Q9VHP0|DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster OX=7227 GN=bel PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.2e-21
Identity = 74/235 (31.49%), Postives = 115/235 (48.94%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           M D GF P IR+ +  L    +   GQ  QT++ +AT  K +Q+L  +     + L    
Sbjct: 464 MLDMGFEPQIRRIVEQLNMPPT---GQR-QTLMFSATFPKQIQELASDFLSNYIFLAVGR 523

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLE-----PSLAKGNRIMVFCNTLNSSRAVDHF 120
           +     +     + +    +K   LL +L      P   K +  ++F  T   + +++ F
Sbjct: 524 VGSTSENITQTILWVY-EPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEF 583

Query: 121 LGENQISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMFDF 180
           L +      + HG+   ++R E L+ F+S   DCP LV T +AARGLD+  V HVI FD 
Sbjct: 584 LYQCNHPVTSIHGDRTQKEREEALRCFRS--GDCPILVATAVAARGLDIPHVKHVINFDL 643

Query: 181 PSNSIDYLHRTGRTARMGAKGNVTSLVTKKD-NILATRIEEAIRKNESLESLTAD 229
           PS+  +Y+HR GRT RMG  G  TS   +K+ NI +  +E  I   + + S   D
Sbjct: 644 PSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFMED 691

[Close]

BLAST of Carg23316 vs. Swiss-Prot
Match: sp|Q9CWX9|DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-20
Identity = 72/225 (32.00%), Postives = 118/225 (52.44%), Query Frame = 0


Query: 30  QTILITATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKMEALLQVL 89
           +T L +ATMTK VQKL     +  V    S+ ++ +   +  ++ +  S+ K   L+ +L
Sbjct: 200 KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIP-SKFKDTYLVYIL 259

Query: 90  EPSLAKGNRIMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQQRVENLKKFKSDDADC 149
                 GN  M+FC+T N+++     L     + +  HG++   +R+ +L KFK+     
Sbjct: 260 NE--LAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS- 319

Query: 150 PTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGNVTSLVTKKDNIL 209
             L+ TD+A+RGLD+  VD V+ FD P++S DY+HR GRTAR G  G   + VT+ D  L
Sbjct: 320 -ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 379

Query: 210 ATRIEEAIRKNESLESLTADNVRRDIARERMITEQKTKNEKFVKV 254
             RIE  I K   +     + V        M+TE+  + ++F ++
Sbjct: 380 FQRIEHLIGKKLPVFPTQDEEV-------MMLTERVNEAQRFARM 412

[Close]

BLAST of Carg23316 vs. Swiss-Prot
Match: sp|P34580|DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.0e-20
Identity = 72/214 (33.64%), Postives = 110/214 (51.40%), Query Frame = 0


Query: 30  QTILITATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKMEALLQVL 89
           +T L +ATMTK V KL     +    +  S+ +K + + +  +I +    NK +    V 
Sbjct: 220 RTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFV---PNKYKETYLVY 279

Query: 90  EPSLAKGNRIMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQQRVENLKKFKSDDADC 149
             +   GN  +VFC T  ++  +   L +  +  V  HG++  ++R+ +L KFKS   + 
Sbjct: 280 LLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKARE- 339

Query: 150 PTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGNVTSLVTKKDNIL 209
             LVCTD+AARGLD+  VD VI +D PS S DY+HR GRTAR G  G   ++VT+ D   
Sbjct: 340 -ILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEA 399

Query: 210 ATRIEEAIRKNESLESLTADNVRRDIARERMITE 243
             +IE  + K         + V   + R +  TE
Sbjct: 400 YQKIEANLGKKLDEYKCVENEVMVLVERTQEATE 428

[Close]

BLAST of Carg23316 vs. TrEMBL
Match: tr|A0A1S3CFM7|A0A1S3CFM7_CUCME (DEAD-box ATP-dependent RNA helicase 39 OS=Cucumis melo OX=3656 GN=LOC103500395 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 1.4e-147
Identity = 298/368 (80.98%), Postives = 314/368 (85.33%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHD QGFQTIL+TATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 283 MFDHGFGPDIRKFIGPLKHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTST 342

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENK+EALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFLGENQ
Sbjct: 343 LHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQ 402

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQ+RVENLKKFKSDD DCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 403 ISTVNYHGEVPAQKRVENLKKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 462

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD+ILATRIEEAI+KNESLESLTAD+VRRDIAR+R I
Sbjct: 463 YLHRTGRTARMGAKGKVTSLVGKKDDILATRIEEAIQKNESLESLTADSVRRDIARDR-I 522

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKAS-PAKTQKSGVRVSKSTK 300
           TE KTKN K +K S   +RAKS+TS A K SSVHSK E+GKAS   +TQK GV VSK  K
Sbjct: 523 TEHKTKNAKLIKAS-TGSRAKSATS-APKSSSVHSKGETGKASYSERTQKPGVPVSKLVK 582

Query: 301 PSRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQ 360
            SRN             SSE             SRR+P + IK SGQKLNVVGFRGRS+Q
Sbjct: 583 SSRN--------IPRKPSSE-------TKKQVASRRRPGSAIKSSGQKLNVVGFRGRSNQ 632

Query: 361 SDKRRSVS 368
            DKRRSVS
Sbjct: 643 FDKRRSVS 632

[Close]

BLAST of Carg23316 vs. TrEMBL
Match: tr|A0A2P5FER6|A0A2P5FER6_9ROSA (DEAD-box ATP-dependent RNA helicase OS=Trema orientalis OX=63057 GN=TorRG33x02_078740 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.1e-128
Identity = 257/363 (70.80%), Postives = 286/363 (78.79%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKF+ PLKHRAS  DGQGFQT+L+TATMTKAVQKLIDEEFQGI HLRTST
Sbjct: 287 MFDHGFGPDIRKFLAPLKHRASKPDGQGFQTVLVTATMTKAVQKLIDEEFQGIEHLRTST 346

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKK+ASARHDFIKLSGSENKMEALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQ
Sbjct: 347 LHKKVASARHDFIKLSGSENKMEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLSENQ 406

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA+QRVENL KFK+DD DCPTLVCTDLAARGLDLDVDHVIMFDFP NSID
Sbjct: 407 ISTVNYHGEVPAEQRVENLNKFKTDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSID 466

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD +LATRIEEA+RKNESLESL+ ++VRRDIAR R I
Sbjct: 467 YLHRTGRTARMGAKGKVTSLVAKKDAVLATRIEEAMRKNESLESLSVNSVRRDIARAR-I 526

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 300
           TEQK ++EK  KV+K+R++ K++ S   K +          + PAK+ K G++VSKS KP
Sbjct: 527 TEQKGRHEKLFKVAKQRSKIKAADS--VKTTQTQGLKSKRASVPAKSAKPGIKVSKSVKP 586

Query: 301 SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 360
           S               SSE                  R+    S  KLNVVGFRGRSS S
Sbjct: 587 S------SASGPRKPSSSERKQLG-----------SKRSSAVKSTSKLNVVGFRGRSSWS 629

Query: 361 DKR 364
           +K+
Sbjct: 647 NKK 629

[Close]

BLAST of Carg23316 vs. TrEMBL
Match: tr|A0A1R3HGC8|A0A1R3HGC8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_29111 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 1.9e-123
Identity = 253/369 (68.56%), Postives = 282/369 (76.42%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFD GFGPDIRKF+GPLK+RAS   GQGFQTIL+TATMTKAVQKLIDEEFQGI HLRTST
Sbjct: 281 MFDRGFGPDIRKFLGPLKNRASK-PGQGFQTILVTATMTKAVQKLIDEEFQGIQHLRTST 340

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENK+EALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFL ENQ
Sbjct: 341 LHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQ 400

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA+QRVENL KFKSD+ DCPTLVCTDLAARGLDLDVDHVIMFDFP NSID
Sbjct: 401 ISTVNYHGEVPAEQRVENLNKFKSDNGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSID 460

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD+ LA RIEEAIRKNESLESLT DNVRRD+AR R I
Sbjct: 461 YLHRTGRTARMGAKGKVTSLVAKKDSFLAERIEEAIRKNESLESLTVDNVRRDVARAR-I 520

Query: 241 TEQKTKNEKFVKVSKERNRAKS-STSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTK 300
           T+QK K+ K +KVS ++ ++K  S   + K SS+    +S   +PAK     V+ SK+ K
Sbjct: 521 TQQKEKSAKLIKVSNQKTKSKPVSDHTSGKKSSIAKSVKS--PTPAKPSNKMVKESKNIK 580

Query: 301 PSRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQ 360
            ++                               ++   N +  +G KLNVVGFRGR+S 
Sbjct: 581 SAK--------------------------AFPVGKKNRSNKVNSTGMKLNVVGFRGRASS 619

Query: 361 SDKRRSVSG 369
           S K    SG
Sbjct: 641 SKKESFRSG 619

[Close]

BLAST of Carg23316 vs. TrEMBL
Match: tr|W9R456|W9R456_9ROSA (DEAD-box ATP-dependent RNA helicase 39 OS=Morus notabilis OX=981085 GN=L484_002724 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 2.7e-122
Identity = 235/297 (79.12%), Postives = 262/297 (88.22%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKF+GPLK+RAS  DGQGFQT+L+ ATMTKAVQ LIDEEFQGIVHLRTST
Sbjct: 291 MFDHGFGPDIRKFLGPLKNRASKPDGQGFQTVLVAATMTKAVQNLIDEEFQGIVHLRTST 350

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKK+ASARHDFIKLSGSENK+EALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQ
Sbjct: 351 LHKKVASARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLSENQ 410

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
            STVNYHGEVPA+QRVENLKKFK++D DCPTLVC+DLAARGLDLDVDHVIMFDFP NSID
Sbjct: 411 TSTVNYHGEVPAEQRVENLKKFKTEDGDCPTLVCSDLAARGLDLDVDHVIMFDFPLNSID 470

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD  LATRIEEA+RKNESLESL+ ++VRRDIAR R I
Sbjct: 471 YLHRTGRTARMGAKGKVTSLVAKKDVALATRIEEAMRKNESLESLSVNSVRRDIARAR-I 530

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKS 298
           TEQK KNEK +KV+K+R+R    ++ + +   V SK  SG   PAK  K+ V+VSK+
Sbjct: 531 TEQKGKNEKLIKVAKQRSR---DSAKSYQDQGVKSKKASG---PAKFAKASVKVSKT 580

[Close]

BLAST of Carg23316 vs. TrEMBL
Match: tr|A0A2N9ILN9|A0A2N9ILN9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53270 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 2.7e-122
Identity = 231/280 (82.50%), Postives = 248/280 (88.57%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFD GFGPDIRKF+GPLK+R S   G+GFQT+L+TATMT+AVQKLIDEEFQGIVHLRTST
Sbjct: 268 MFDRGFGPDIRKFLGPLKNRVSKPGGEGFQTVLVTATMTQAVQKLIDEEFQGIVHLRTST 327

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENK+EALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFL ENQ
Sbjct: 328 LHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLDENQ 387

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA+QRVENLK+FKSDD DCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 388 ISTVNYHGEVPAEQRVENLKRFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 447

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSL+ KKD ILATRIEEAIRKNESLESLT DNVRRDIAR R I
Sbjct: 448 YLHRTGRTARMGAKGKVTSLIAKKDLILATRIEEAIRKNESLESLTVDNVRRDIARSR-I 507

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESG 281
           TEQK  N K VK+S E+N+       A+ P+    +  SG
Sbjct: 508 TEQKRINVKSVKISNEKNKITRKAKEASAPAKSSKRASSG 546

The following BLAST results are available for this feature:

BLAST of Carg23316 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936776.1	3.0e-181	100.00	DEAD-box ATP-dependent RNA helicase 39 isoform X1 [Cucurbita moschata]	[more]
XP_022936777.1	1.1e-178	92.93	DEAD-box ATP-dependent RNA helicase 39 isoform X2 [Cucurbita moschata]	[more]
XP_022976914.1	5.3e-170	89.97	DEAD-box ATP-dependent RNA helicase 39 [Cucurbita maxima]	[more]
XP_023536046.1	3.8e-152	87.77	DEAD-box ATP-dependent RNA helicase 39 [Cucurbita pepo subsp. pepo]	[more]
XP_008461901.1	2.2e-147	80.98	PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo]	[more]

BLAST of Carg23316 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09730.1	5.6e-113	78.38	RH39	[more]
AT1G59990.1	6.5e-21	32.84	DEA(D/H)-box RNA helicase family protein	[more]
AT3G58570.1	1.0e-18	28.76	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G01540.2	1.4e-18	29.38	DEAD box RNA helicase 1	[more]
AT3G06480.1	5.2e-18	31.58	DEAD box RNA helicase family protein	[more]

BLAST of Carg23316 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q56X76\|RH39_ARATH	1.0e-111	78.38	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 P...	[more]
sp\|Q5VRY0\|RH39_ORYSJ	5.2e-108	64.55	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q9VHP0\|DDX3_DROME	8.2e-21	31.49	ATP-dependent RNA helicase bel OS=Drosophila melanogaster OX=7227 GN=bel PE=1 SV...	[more]
sp\|Q9CWX9\|DDX47_MOUSE	1.8e-20	32.00	Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2...	[more]
sp\|P34580\|DDX47_CAEEL	4.0e-20	33.64	Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans OX=6239 G...	[more]

BLAST of Carg23316 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFM7\|A0A1S3CFM7_CUCME	1.4e-147	80.98	DEAD-box ATP-dependent RNA helicase 39 OS=Cucumis melo OX=3656 GN=LOC103500395 P...	[more]
tr\|A0A2P5FER6\|A0A2P5FER6_9ROSA	1.1e-128	70.80	DEAD-box ATP-dependent RNA helicase OS=Trema orientalis OX=63057 GN=TorRG33x02_0...	[more]
tr\|A0A1R3HGC8\|A0A1R3HGC8_9ROSI	1.9e-123	68.56	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_29111 PE=4 SV=1	[more]
tr\|W9R456\|W9R456_9ROSA	2.7e-122	79.12	DEAD-box ATP-dependent RNA helicase 39 OS=Morus notabilis OX=981085 GN=L484_0027...	[more]
tr\|A0A2N9ILN9\|A0A2N9ILN9_FAGSY	2.7e-122	82.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53270 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23316-RA	Carg23316-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 110..192 e-value: 4.3E-25 score: 99.4
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 81..192 e-value: 7.6E-25 score: 87.4
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 81..231 score: 16.658
IPR001650	Helicase, C-terminal	CDD	cd00079	HELICc	coord: 78..200 e-value: 6.50833E-34 score: 122.346
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 66..298 e-value: 2.8E-41 score: 143.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 284..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..368
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 312..333
None	No IPR available	PANTHER	PTHR24031:SF247	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	coord: 1..302
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 1..302
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 1..56 score: 6.504
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..216

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23316	Cla016385	Watermelon (97103) v1	carwmB0266
Carg23316	Csa7G291700	Cucumber (Chinese Long) v2	carcuB0303
Carg23316	MELO3C024058	Melon (DHL92) v3.5.1	carmeB0276
Carg23316	ClCG09G010260	Watermelon (Charleston Gray)	carwcgB0267
Carg23316	CSPI07G12410	Wild cucumber (PI 183967)	carcpiB0307
Carg23316	Cucsa.079780	Cucumber (Gy14) v1	carcgyB0324
Carg23316	CmaCh09G011260	Cucurbita maxima (Rimu)	carcmaB0382
Carg23316	CmoCh09G011360	Cucurbita moschata (Rifu)	carcmoB0380
Carg23316	CsGy7G011550	Cucumber (Gy14) v2	carcgybB0291
Carg23316	MELO3C024058.2	Melon (DHL92) v3.6.1	carmedB0288
Carg23316	CsaV3_7G024430	Cucumber (Chinese Long) v3	carcucB0306
Carg23316	Cla97C09G172980	Watermelon (97103) v2	carwmbB0284
Carg23316	Bhi09G001299	Wax gourd	carwgoB0360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None