Carg23316-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23316-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP-dependent RNA helicase
Location	Cucurbita_argyrosperma_scaffold_188 : 289514 .. 294546 (-)
Sequence length	1107

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATCACGGATTTGGACCGGACATTCGTAAGTTTATTGGCCCATTAAAGCATCGTGCCTCGTCACATGATGGCCAAGGATTTCAAACAATATTGATCACTGCAACAATGACAAAGGTATTGGTTTCAATGTGACAGAAGTATTTTGTTTTTCCCTGTTGAGATCATATTTTTCTTTGAATCTGTATGGATTGATAATTTGGATGTTAGAAAATTCGAAGGTAGGCATGTTGAACCTGATGGAACCCTTCTTTATAATTGTTTTTGTGAGATCCTACATTGGTTGGGGAGGAGAACGTAGCACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTATAAACCTTGAGGGGAAGCCTGAAAGGAAAAGCCCAAAGAGGATAATATCTGCTAGCGGTGTGCTTGAGATGTTATAAATGGTATCAGAGCCAGACACCGGACAATGTGCTAGCGAGGAAGTTGAACTCCGGGGATGGACATGAGGCAGTGTGCCAGCATGGACCTTGGGCCCCGAAAGGGGTGGACTAGAGGGTCCCACATCGATTAGAGAAAGGAACGAGTGCCAGCGAGGACGCTAGGCCCCGAAAGGGGTGGATTGTGAGATCTCACATTGGTTGGGGAGGAGAATGAAGCACCCTTTGTAAGGGTTTGGAAACCTCTCCCTAGCAAACGCATTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTATAAATGGAATCAGAGCCAAACACAGGACGATGTGCTAGCAACGAAGTTGAGCCCCGAAGGGGATGGACATGAGGCGGTGTGCCAGCAAGGACCCTGGGCCTCGAAAGGGGGTGGACTGGAGGGTCCCACATCAATTAGAGAAAGGAACGAGTGCCAGCGAGGACATTGGGCCCCGAAAGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGAAGAACGAAACACCCTTTATAAGGGTGTGAAAACCTTTCCCTAGCAGACACATTTTAAAAACCTTGAGAGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCTATTACAGTTTCGGTAGAAGGATGTTAAATGTTCTTTGAATACTTCGACAATCGGTTCTATATGCGAGATCAGTTTCCTTTTCTAGTCAATAGTCATTCGATTTAATTTACAATTTCAGCATTTGTCGTTTCATTATACACTTCGGTTGTTAAAATTCTTCCGCTCATACGTTCTGGCCATCGCTGCAGGCAGTTCAAAAGCTGATTGATGAGGAGTTTCAGGGCATTGTGCATTTACGCACATCAACTTTGCATAAAAAGATCGCATCCGCTCGTCATGATTTCATCAAGCTTTCAGGTTCTGAAAACAAGATGGAAGCTTTATTGCAGGTTTGACTATTGTATTTATTTCTTGGGTACTTCTTAGTCCATTATGAACGCTCTGACATATATTAGCTTAGATTCTTAGACCATTATCTCCTTATTTCCATGAAGTTCGTGGTTTCGTTGTTTCATATCGTCATGGTCATGGCTTGGTCGTTAAAAAGTTCTAGGAGTCTCAATACAAGTAACTTCCAATGCCTGGGCTGTTAAACTGCCAAGCCATGCCATGACCATGAAGTTTTTAACCTCCCACCTGGCAAGGTTTTGAAATTTAACATATGGAACTGAGCTTGTGCATCCATGAGTTTCACCTTTCCTATTTACCATGGGAAGAATTTCAATGATTTCACCTCAAGTAATTACTTCCTTTTGAGTTTGAAAGAAGTATAAGATTGATTCTCAACTATTTTTTGCATTGCCATTTGTCTCAAATCCCTCCCCCTTGTTAAGTTACTAATAGGATAACAGACTGATCTTCCCCGACTACTATTCGTGACTGATTGAACGAGATAAAGCATATGAAATCCTGTAAACTCCTCTCCTTTACTTTATAGTCTATCAGCTTCTTCCTTCCCTTCCTCCTTACGAGAAGTTGTTGTCACGAGAGCTCCAGAACCTTATACTCTATTACCTGACATTCCCTACCTTGACTGCTATCCGAGATTGATTGAACAAGGTAAAGCATATGAAATCCTGTAAACGCCCCTCCTTTACTTAACAGTCTTATCAGCTTCTTCCTTCCATTCCTTCTTACAAGAAGTGGTTGACACGAGAGCTTCTGAACTTTATACTCTAATACCTGACCTTCCCCTATTTACCTTATGAATTAAATCCTGAACCTATTTATTCTTCTTCTTTTGAGGAAGGTTTATGGAAGGAAAGACGAAAGAAAGATTACCCTAATTTTCTTACAAGAATCCCCAACTAAATGATGATAATTCCTTGTTTACGAGATTCAGGAGAGAAATAAGGAATTGGAGAATATGTAAGACCCATAAGTGAAGGAAGGACGTAATCTCAGCCGTGAGAGAAGGGGTTTTCTTAGTTTCCATTTGCTCGACATGTTTGACTTCAGGCCGCAAATGGATTCTATGCACTATGCTTACTTAGAGGCAGAAAAACATTTTTCGTCAATGAAGGACCTATGTAGACGGACATTCATAGTGCATGAAAAAGTACTTTTAAGCACCTAGAAAGTCATTCCAAGCAGACTCTAACTTTCCAAGCGGACTCTAACTTATTGAGACGGAGACAGATAAATCTAGTAGTTGATACACAAAGCAATAAGGAAAGAAATCAACCAGCTAAATCCTTACTAAAAAATGCATGAACCTAAACAGCAGGAAGTCTTAAGCATCACATTATCATCTTTAGATTATTGGACTGTCTATTGGGCTTCATATTTGTTATTTTGTGAGGATGCAGGTTCTTGAACCAAGTTTGGCAAAAGGAAACAGGATAATGGTGTTCTGTAACACTTTAAATTCCAGCCGTGCCGTGGATCATTTTCTCGGTGAAAATCAAATTTCTACGGTCAATTACCACGGAGAGGTGCCTGCTCAGCAGCGGTAAGGATTTTGGTGATAAACTCCGTTTCATTTTTATAAAATTTACTCTACTTAGTGACAATCAATGAAGTTACAAAGAGCTGCAGTGACTCGGATCGAAAAACTGAAAAGAACGAGTAGATACAAAAAGATTGTTGGTTCTAAGTAATCCAAGATTTTGATATATGCGTTTATACTGTCGTTTGAAAATCAGAGTCGAGAATCTCAAGAAGTTCAAGAGTGATGATGCTGATTGTCCGACGTTAGTCTGCACGGACTTGGCCGCTAGGGGCTTGGATTTGGATGTGGATCATGTCATTATGTTTGATTTCCCTTCAAATTCTGTAAGAGTTTTTTTTGCTTTTGAAGAACTTGGCTTGTTATTTTGCACCACCTCTTTTTGTGCTGCACTTTCATGCCTAAATAGCTTATAAATGATATTTTGTTTCGCCTTTTAGATCGATTACCTTCATCGCACGGGAAGAACAGCTCGTATGGGTGCAAAAGGTTCGTCGCTTGCTCTTTGATGTACTTGATGTTTATAACTCTTTATTTCACATGGATTTTATGCTGTCCATTTGTTGGGTAACTAGGAAGGAAAATCCTTGAGCCTAGCATCCTAATTTTCTACTGAAATAGAGCTGCTACCATATACATGACGTGACTTTTTTATGCGGAAACATTCATTTAAAATCATTCATCGTTACATCGAGCATCAGCTGTGGGACCATGGAACATGTTAAGCCTACCTCGTAGGCTAGTTCACAGAATCTATGACTTAGAGCTCTGATACCATATTCATGACGTGACCTTTTTATGCGGAAACATTCATTAAAATCATTTATCCTTACATCGAGCATTATCTGTGAGACCATGGAACATGTTAAGCCTACCTCGTAGGCTAGTCCACATAATCTATAACACCATATGCATGATGTGACTTTTTTATGCGGAAACATTCATTTAAAATCATTTATCGTTACATCAAGCATCAGCTGTGGGACCATGGAACATGTTAAGCCTACCTCGTAGGCTAGTCCACATAATCTATAACACCATATGCATGATGTGACTTTTTTATGCGGAAACATTCATTTAAAATCATTCATCGTTACATCGAGCATCAGCTGTGGGACCATGGAGCATGTTAAGCCTACCTCGTAGGCTAGTCCAGATGATCTATAACCTAGAGCTCTGATACCAACTGTAACAACCTTAATTTTCTACTGGAATAGAGCCGCTACCATATGCATGATGTAATTGTTTTATGAATTATTTTAAATGAATGTTTTTGTATAAGAAGATTACGTCATGCATATGGTAGCGGCTCTATTTCAGTAGAAAATTAAGGTCGTTACAAGAAGTATCCTCATCCAACCATTACTACTTGTAGCTAGCCGTTATTCGTTGATTCACTTACTCACGAACTTGTATCTTAACTCGCAGCTTAGCCTGACTTGTACAAGCTAGGTTGAATTTGATGAAATTGAACTTCCTTGCTGATCCTTCATTATTTGTACATGTATTGGTGTAGGAAATGTGACAAGCCTGGTTACTAAAAAGGATAATATTTTAGCCACTCGCATCGAGGAAGCAATCCGAAAAAACGAGAGCTTAGAATCTCTCACAGCAGATAATGTGCGAAGAGACATAGCACGGGAACGTATGATAACCGAGCAGAAAACGAAAAATGAAAAATTTGTTAAGGTTTCAAAGGAGAGAAACAGAGCTAAATCATCAACATCACCAGCAGCAAAACCTTCAAGTGTCCATTCAAAAGATGAATCTGGAAAAGCATCTCCAGCAAAGACTCAGAAGTCCGGTGTTCGGGTTTCTAAGTCAACAAAACCGTCGAGGAACGTCCCCAGAAAACCGTTGAGGAATGTCCCCAGAAAACCGTCTTCCGAACCCAGGAAACCGTCTTCCGAACCGAAGAAGCAGGTGGCTAGCAGAAGGCAGCCCAGAAATGGCATCAAACCGTCAGGTCAGAAACTAAATGTAGTTGGGTTTAGAGGGAGAAGCAGCCAGTCTGATAAGAGAAGATCAGTATCCGGTTAA

mRNA sequence

ATGTTTGATCACGGATTTGGACCGGACATTCGTAAGTTTATTGGCCCATTAAAGCATCGTGCCTCGTCACATGATGGCCAAGGATTTCAAACAATATTGATCACTGCAACAATGACAAAGGCAGTTCAAAAGCTGATTGATGAGGAGTTTCAGGGCATTGTGCATTTACGCACATCAACTTTGCATAAAAAGATCGCATCCGCTCGTCATGATTTCATCAAGCTTTCAGGTTCTGAAAACAAGATGGAAGCTTTATTGCAGGTTCTTGAACCAAGTTTGGCAAAAGGAAACAGGATAATGGTGTTCTGTAACACTTTAAATTCCAGCCGTGCCGTGGATCATTTTCTCGGTGAAAATCAAATTTCTACGGTCAATTACCACGGAGAGGTGCCTGCTCAGCAGCGAGTCGAGAATCTCAAGAAGTTCAAGAGTGATGATGCTGATTGTCCGACGTTAGTCTGCACGGACTTGGCCGCTAGGGGCTTGGATTTGGATGTGGATCATGTCATTATGTTTGATTTCCCTTCAAATTCTATCGATTACCTTCATCGCACGGGAAGAACAGCTCGTATGGGTGCAAAAGGAAATGTGACAAGCCTGGTTACTAAAAAGGATAATATTTTAGCCACTCGCATCGAGGAAGCAATCCGAAAAAACGAGAGCTTAGAATCTCTCACAGCAGATAATGTGCGAAGAGACATAGCACGGGAACGTATGATAACCGAGCAGAAAACGAAAAATGAAAAATTTGTTAAGGTTTCAAAGGAGAGAAACAGAGCTAAATCATCAACATCACCAGCAGCAAAACCTTCAAGTGTCCATTCAAAAGATGAATCTGGAAAAGCATCTCCAGCAAAGACTCAGAAGTCCGGTGTTCGGGTTTCTAAGTCAACAAAACCGTCGAGGAACGTCCCCAGAAAACCGTTGAGGAATGTCCCCAGAAAACCGTCTTCCGAACCCAGGAAACCGTCTTCCGAACCGAAGAAGCAGGTGGCTAGCAGAAGGCAGCCCAGAAATGGCATCAAACCGTCAGGTCAGAAACTAAATGTAGTTGGGTTTAGAGGGAGAAGCAGCCAGTCTGATAAGAGAAGATCAGTATCCGGTTAA

Coding sequence (CDS)

ATGTTTGATCACGGATTTGGACCGGACATTCGTAAGTTTATTGGCCCATTAAAGCATCGTGCCTCGTCACATGATGGCCAAGGATTTCAAACAATATTGATCACTGCAACAATGACAAAGGCAGTTCAAAAGCTGATTGATGAGGAGTTTCAGGGCATTGTGCATTTACGCACATCAACTTTGCATAAAAAGATCGCATCCGCTCGTCATGATTTCATCAAGCTTTCAGGTTCTGAAAACAAGATGGAAGCTTTATTGCAGGTTCTTGAACCAAGTTTGGCAAAAGGAAACAGGATAATGGTGTTCTGTAACACTTTAAATTCCAGCCGTGCCGTGGATCATTTTCTCGGTGAAAATCAAATTTCTACGGTCAATTACCACGGAGAGGTGCCTGCTCAGCAGCGAGTCGAGAATCTCAAGAAGTTCAAGAGTGATGATGCTGATTGTCCGACGTTAGTCTGCACGGACTTGGCCGCTAGGGGCTTGGATTTGGATGTGGATCATGTCATTATGTTTGATTTCCCTTCAAATTCTATCGATTACCTTCATCGCACGGGAAGAACAGCTCGTATGGGTGCAAAAGGAAATGTGACAAGCCTGGTTACTAAAAAGGATAATATTTTAGCCACTCGCATCGAGGAAGCAATCCGAAAAAACGAGAGCTTAGAATCTCTCACAGCAGATAATGTGCGAAGAGACATAGCACGGGAACGTATGATAACCGAGCAGAAAACGAAAAATGAAAAATTTGTTAAGGTTTCAAAGGAGAGAAACAGAGCTAAATCATCAACATCACCAGCAGCAAAACCTTCAAGTGTCCATTCAAAAGATGAATCTGGAAAAGCATCTCCAGCAAAGACTCAGAAGTCCGGTGTTCGGGTTTCTAAGTCAACAAAACCGTCGAGGAACGTCCCCAGAAAACCGTTGAGGAATGTCCCCAGAAAACCGTCTTCCGAACCCAGGAAACCGTCTTCCGAACCGAAGAAGCAGGTGGCTAGCAGAAGGCAGCCCAGAAATGGCATCAAACCGTCAGGTCAGAAACTAAATGTAGTTGGGTTTAGAGGGAGAAGCAGCCAGTCTGATAAGAGAAGATCAGTATCCGGTTAA

Protein sequence

MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMITEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKPSRNVPRKPLRNVPRKPSSEPRKPSSEPKKQVASRRQPRNGIKPSGQKLNVVGFRGRSSQSDKRRSVSG

Homology

[Close]

BLAST of Carg23316-RA vs. NCBI nr
Match: XP_022936776.1 (DEAD-box ATP-dependent RNA helicase 39 isoform X1 [Cucurbita moschata])

HSP 1 Score: 644.0 bits (1660), Expect = 3.0e-181
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 275 MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ
Sbjct: 335 LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 395 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI
Sbjct: 455 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 514

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 300
           TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP
Sbjct: 515 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 574

Query: 301 SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 360
           SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS
Sbjct: 575 SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 634

Query: 361 DKRRSVSG 369
           DKRRSVSG
Sbjct: 635 DKRRSVSG 642

[Close]

BLAST of Carg23316-RA vs. NCBI nr
Match: XP_022936777.1 (DEAD-box ATP-dependent RNA helicase 39 isoform X2 [Cucurbita moschata])

HSP 1 Score: 635.6 bits (1638), Expect = 1.1e-178
Identity = 342/368 (92.93%), Postives = 342/368 (92.93%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 275 MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ
Sbjct: 335 LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 395 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI
Sbjct: 455 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 514

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 300
           TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP
Sbjct: 515 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 574

Query: 301 SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 360
           SRN             SSE             SRRQPRNGIKPSGQKLNVVGFRGRSSQS
Sbjct: 575 SRN--------VPRKPSSE-------PKKQVASRRQPRNGIKPSGQKLNVVGFRGRSSQS 627

Query: 361 DKRRSVSG 369
           DKRRSVSG
Sbjct: 635 DKRRSVSG 627

[Close]

BLAST of Carg23316-RA vs. NCBI nr
Match: XP_022976914.1 (DEAD-box ATP-dependent RNA helicase 39 [Cucurbita maxima])

HSP 1 Score: 606.7 bits (1563), Expect = 5.3e-170
Identity = 332/369 (89.97%), Postives = 335/369 (90.79%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 275 MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFLGENQ
Sbjct: 335 LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 395 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKGNVTSLVTKKD+ILATRIEEAIRKNESLESLTADNVRRDIAR+RMI
Sbjct: 455 YLHRTGRTARMGAKGNVTSLVTKKDHILATRIEEAIRKNESLESLTADNVRRDIARDRMI 514

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKA-SPAKTQKSGVRVSKSTK 300
           TEQK KNEK VKVSKER RAKSSTS AAKPSSVHSKDESGKA SP KTQKSGVRVSK TK
Sbjct: 515 TEQKMKNEKLVKVSKERTRAKSSTS-AAKPSSVHSKDESGKASSPVKTQKSGVRVSKLTK 574

Query: 301 PSRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQ 360
           PSRN             SSE             SRRQ RNGIKPSGQKLNVVGFRGRSSQ
Sbjct: 575 PSRN--------VPRKPSSE-------PKKQVTSRRQSRNGIKPSGQKLNVVGFRGRSSQ 627

Query: 361 SDKRRSVSG 369
           SDKRRSVSG
Sbjct: 635 SDKRRSVSG 627

[Close]

BLAST of Carg23316-RA vs. NCBI nr
Match: XP_023536046.1 (DEAD-box ATP-dependent RNA helicase 39 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 547.4 bits (1409), Expect = 3.8e-152
Identity = 323/368 (87.77%), Postives = 329/368 (89.40%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 275 MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFLGENQ
Sbjct: 335 LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 395 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKGNVTSLVTKKD+ILATRIEEAI+KNESLESLTADNVRRDIAR+RMI
Sbjct: 455 YLHRTGRTARMGAKGNVTSLVTKKDHILATRIEEAIQKNESLESLTADNVRRDIARDRMI 514

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 300
           TEQKTKN+KFVKVSKERNRAKSST+                                   
Sbjct: 515 TEQKTKNDKFVKVSKERNRAKSSTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 574

Query: 301 SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 360
              XXXXXXXXXXXXX SEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS
Sbjct: 575 XXXXXXXXXXXXXXXXXSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 634

Query: 361 DKRRSVSG 369
           DKRRSVSG
Sbjct: 635 DKRRSVSG 642

[Close]

BLAST of Carg23316-RA vs. NCBI nr
Match: XP_008461901.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo])

HSP 1 Score: 531.6 bits (1368), Expect = 2.2e-147
Identity = 298/368 (80.98%), Postives = 314/368 (85.33%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHD QGFQTIL+TATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 283 MFDHGFGPDIRKFIGPLKHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTST 342

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENK+EALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFLGENQ
Sbjct: 343 LHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQ 402

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQ+RVENLKKFKSDD DCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 403 ISTVNYHGEVPAQKRVENLKKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 462

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD+ILATRIEEAI+KNESLESLTAD+VRRDIAR+R I
Sbjct: 463 YLHRTGRTARMGAKGKVTSLVGKKDDILATRIEEAIQKNESLESLTADSVRRDIARDR-I 522

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKAS-PAKTQKSGVRVSKSTK 300
           TE KTKN K +K S   +RAKS+TS A K SSVHSK E+GKAS   +TQK GV VSK  K
Sbjct: 523 TEHKTKNAKLIKAS-TGSRAKSATS-APKSSSVHSKGETGKASYSERTQKPGVPVSKLVK 582

Query: 301 PSRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQ 360
            SRN             SSE             SRR+P + IK SGQKLNVVGFRGRS+Q
Sbjct: 583 SSRN--------IPRKPSSE-------TKKQVASRRRPGSAIKSSGQKLNVVGFRGRSNQ 632

Query: 361 SDKRRSVS 368
            DKRRSVS
Sbjct: 643 FDKRRSVS 632

[Close]

BLAST of Carg23316-RA vs. TAIR10
Match: AT4G09730.1 (RH39)

HSP 1 Score: 404.8 bits (1039), Expect = 5.6e-113
Identity = 203/259 (78.38%), Postives = 231/259 (89.19%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFD GFGP+IRKF+ PL  RA   + QGFQT+L+TATMT AVQKL+DEEFQGI HLRTST
Sbjct: 275 MFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIA+ARHDFIKLSG E+K+EALLQVLEPSLAKG+++MVFCNTLNSSRAVDH+L ENQ
Sbjct: 335 LHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA+QRVENLKKFK ++ DCPTLVCTDLAARGLDLDVDHV+MFDFP NSID
Sbjct: 395 ISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV++KD +LA RIEEA+R NESLESLT DNVRRD AR   I
Sbjct: 455 YLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTH-I 514

Query: 241 TEQKTKNEKFVK-VSKERN 259
           T++K ++ K ++ VSK+RN
Sbjct: 515 TQEKGRSVKQIREVSKQRN 532

[Close]

BLAST of Carg23316-RA vs. TAIR10
Match: AT1G59990.1 (DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 99.0 bits (245), Expect = 6.5e-21
Identity = 66/201 (32.84%), Postives = 105/201 (52.24%), Query Frame = 0


Query: 30  QTILITATM----TKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKMEAL 89
           Q I I AT+     K    ++   FQ  V +  + LH+     +  +++++  +++++AL
Sbjct: 354 QYIFIAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVT-VDSQVDAL 413

Query: 90  LQ-VLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQQRVENLKKFKS 149
           ++ V   +     R MVF NT+ +  AV   L +  I    YH      +R   L  F+ 
Sbjct: 414 IEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE 473

Query: 150 DDADCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGNVTSLVTK 209
                   VCTD AARG+D+ +V HVI  DF S+++D+LHR GRTAR G  G VTSL T+
Sbjct: 474 TGG---VFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTE 533

Query: 210 KDNILATRIEEAIRKNESLES 225
            +  L   I EA++  + +E+
Sbjct: 534 ANRDLVEAIREAVKMGQPVET 550

[Close]

BLAST of Carg23316-RA vs. TAIR10
Match: AT3G58570.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-18
Identity = 65/226 (28.76%), Postives = 106/226 (46.90%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           M D GF P IRK +  +            QT+L +AT  + +Q+L  +     + L    
Sbjct: 310 MLDMGFEPQIRKIVQQMDMPPPGVR----QTMLFSATFPREIQRLASDFLSNYIFLAVGR 369

Query: 61  LHKK--IASARHDFIKLSGSENKMEALLQVLEPSLAKGNR-----IMVFCNTLNSSRAVD 120
           +     +   R +F+      +K   L+ +L      GN+      +VF  T   + +++
Sbjct: 370 VGSSTDLIVQRVEFVH---DSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLE 429

Query: 121 HFLGENQISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMF 180
           ++L  N       HG+   Q+R   L+ FK+     P LV TD+AARGLD+  V HV+ F
Sbjct: 430 NWLCINGFPATTIHGDRSQQEREVALRSFKT--GRTPILVATDVAARGLDIPHVAHVVNF 489

Query: 181 DFPSNSIDYLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRK 219
           D P++  DY+HR GRT R G  G  T+     +  +A  + E +++
Sbjct: 490 DLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQE 526

[Close]

BLAST of Carg23316-RA vs. TAIR10
Match: AT3G01540.2 (DEAD box RNA helicase 1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-18
Identity = 62/211 (29.38%), Postives = 104/211 (49.29%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           M D GF P IRK +  +  +         QT++ TAT  K V+K+  +       +    
Sbjct: 316 MLDMGFEPQIRKIVKEIPTKR--------QTLMYTATWPKGVRKIAADLLVNPAQVNIGN 375

Query: 61  LHKKIAS---ARH-DFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFL 120
           + + +A+    +H + +     + ++E +L+  EP    G+++++FC+T      +   L
Sbjct: 376 VDELVANKSITQHIEVVAPMEKQRRLEQILRSQEP----GSKVIIFCSTKRMCDQLTRNL 435

Query: 121 GENQISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFP 180
              Q      HG+    +R   L +F+S     P LV TD+AARGLD+ D+  V+ +DFP
Sbjct: 436 -TRQFGAAAIHGDKSQPERDNVLNQFRS--GRTPVLVATDVAARGLDVKDIRAVVNYDFP 495

Query: 181 SNSIDYLHRTGRTARMGAKGNVTSLVTKKDN 207
           +   DY+HR GRT R GA G   +    +D+
Sbjct: 496 NGVEDYVHRIGRTGRAGATGQAFTFFGDQDS 511

[Close]

BLAST of Carg23316-RA vs. TAIR10
Match: AT3G06480.1 (DEAD box RNA helicase family protein)

HSP 1 Score: 89.4 bits (220), Expect = 5.2e-18
Identity = 66/209 (31.58%), Postives = 104/209 (49.76%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           M D GF P IRK +  +  R         QT++ TAT  K V+K+  +     V +    
Sbjct: 593 MLDMGFEPQIRKIVNEIPPRR--------QTLMYTATWPKEVRKIASDLLVNPVQVNIGR 652

Query: 61  LHKKIAS-ARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGE- 120
           + +  A+ A   ++++     K   L Q+L  S  +G+++++FC+T    R  DH     
Sbjct: 653 VDELAANKAITQYVEVVPQMEKERRLEQILR-SQERGSKVIIFCST---KRLCDHLARSV 712

Query: 121 -NQISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFPS 180
                 V  HG+    +R   L +F+S  + C  L+ TD+AARGLD+ D+  VI +DFP+
Sbjct: 713 GRHFGAVVIHGDKTQGERDWVLNQFRSGKS-C-VLIATDVAARGLDIKDIRVVINYDFPT 772

Query: 181 NSIDYLHRTGRTARMGAKGNVTSLVTKKD 206
              DY+HR GRT    A G   +  T++D
Sbjct: 773 GVEDYVHRIGRTGXXXATGVAFTFFTEQD 787

[Close]

BLAST of Carg23316-RA vs. Swiss-Prot
Match: sp|Q56X76|RH39_ARATH (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2)

HSP 1 Score: 404.8 bits (1039), Expect = 1.0e-111
Identity = 203/259 (78.38%), Postives = 231/259 (89.19%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFD GFGP+IRKF+ PL  RA   + QGFQT+L+TATMT AVQKL+DEEFQGI HLRTST
Sbjct: 275 MFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTST 334

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIA+ARHDFIKLSG E+K+EALLQVLEPSLAKG+++MVFCNTLNSSRAVDH+L ENQ
Sbjct: 335 LHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQ 394

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA+QRVENLKKFK ++ DCPTLVCTDLAARGLDLDVDHV+MFDFP NSID
Sbjct: 395 ISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSID 454

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV++KD +LA RIEEA+R NESLESLT DNVRRD AR   I
Sbjct: 455 YLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTH-I 514

Query: 241 TEQKTKNEKFVK-VSKERN 259
           T++K ++ K ++ VSK+RN
Sbjct: 515 TQEKGRSVKQIREVSKQRN 532

[Close]

BLAST of Carg23316-RA vs. Swiss-Prot
Match: sp|Q5VRY0|RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 5.2e-108
Identity = 244/378 (64.55%), Postives = 280/378 (74.07%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFD GFGPDIRKF+ PLK+RA+    QGFQT+L+TATMTKAVQKLIDEEF+GIVHLRT+T
Sbjct: 273 MFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTT 332

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
             K++A+ARHDFIKLSGSENK+EALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQ
Sbjct: 333 FQKRVATARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQ 392

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA++RVENL KF++++ DCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 393 ISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 452

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD  LATRIEEA++KNESLE+LT +NVRR     +  
Sbjct: 453 YLHRTGRTARMGAKGKVTSLVAKKDVTLATRIEEAMKKNESLEALTTNNVRRAAVNPQY- 512

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 300
                                  TS   +PS++   ++ G+   A   KS  R+ K T  
Sbjct: 513 -----------------------TSTKGRPSALKVVNQKGRRGVALQTKSS-RIVKDTTS 572

Query: 301 SR---------NXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPR----NGIKPSGQK 360
           SR           XXXXXXXXXXXX   XXXXXXXXXX   SR +P     + +   G K
Sbjct: 573 SRRRSPIRSQPRSXXXXXXXXXXXXXXXXXXXXXXXXXVAKSRPRPEGRKGDALNKLGSK 625

Query: 361 LNVVGFRGRSSQSDKRRS 366
           L+VVGFRGRSS    + S
Sbjct: 633 LSVVGFRGRSSGKSAQAS 625

[Close]

BLAST of Carg23316-RA vs. Swiss-Prot
Match: sp|Q9VHP0|DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster OX=7227 GN=bel PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.2e-21
Identity = 74/235 (31.49%), Postives = 115/235 (48.94%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           M D GF P IR+ +  L    +   GQ  QT++ +AT  K +Q+L  +     + L    
Sbjct: 464 MLDMGFEPQIRRIVEQLNMPPT---GQR-QTLMFSATFPKQIQELASDFLSNYIFLAVGR 523

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLE-----PSLAKGNRIMVFCNTLNSSRAVDHF 120
           +     +     + +    +K   LL +L      P   K +  ++F  T   + +++ F
Sbjct: 524 VGSTSENITQTILWVY-EPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEF 583

Query: 121 LGENQISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMFDF 180
           L +      + HG+   ++R E L+ F+S   DCP LV T +AARGLD+  V HVI FD 
Sbjct: 584 LYQCNHPVTSIHGDRTQKEREEALRCFRS--GDCPILVATAVAARGLDIPHVKHVINFDL 643

Query: 181 PSNSIDYLHRTGRTARMGAKGNVTSLVTKKD-NILATRIEEAIRKNESLESLTAD 229
           PS+  +Y+HR GRT RMG  G  TS   +K+ NI +  +E  I   + + S   D
Sbjct: 644 PSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFMED 691

[Close]

BLAST of Carg23316-RA vs. Swiss-Prot
Match: sp|Q9CWX9|DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-20
Identity = 72/225 (32.00%), Postives = 118/225 (52.44%), Query Frame = 0


Query: 30  QTILITATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKMEALLQVL 89
           +T L +ATMTK VQKL     +  V    S+ ++ +   +  ++ +  S+ K   L+ +L
Sbjct: 200 KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIP-SKFKDTYLVYIL 259

Query: 90  EPSLAKGNRIMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQQRVENLKKFKSDDADC 149
                 GN  M+FC+T N+++     L     + +  HG++   +R+ +L KFK+     
Sbjct: 260 NE--LAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS- 319

Query: 150 PTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGNVTSLVTKKDNIL 209
             L+ TD+A+RGLD+  VD V+ FD P++S DY+HR GRTAR G  G   + VT+ D  L
Sbjct: 320 -ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 379

Query: 210 ATRIEEAIRKNESLESLTADNVRRDIARERMITEQKTKNEKFVKV 254
             RIE  I K   +     + V        M+TE+  + ++F ++
Sbjct: 380 FQRIEHLIGKKLPVFPTQDEEV-------MMLTERVNEAQRFARM 412

[Close]

BLAST of Carg23316-RA vs. Swiss-Prot
Match: sp|P34580|DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.0e-20
Identity = 72/214 (33.64%), Postives = 110/214 (51.40%), Query Frame = 0


Query: 30  QTILITATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKMEALLQVL 89
           +T L +ATMTK V KL     +    +  S+ +K + + +  +I +    NK +    V 
Sbjct: 220 RTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFV---PNKYKETYLVY 279

Query: 90  EPSLAKGNRIMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQQRVENLKKFKSDDADC 149
             +   GN  +VFC T  ++  +   L +  +  V  HG++  ++R+ +L KFKS   + 
Sbjct: 280 LLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKARE- 339

Query: 150 PTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGNVTSLVTKKDNIL 209
             LVCTD+AARGLD+  VD VI +D PS S DY+HR GRTAR G  G   ++VT+ D   
Sbjct: 340 -ILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEA 399

Query: 210 ATRIEEAIRKNESLESLTADNVRRDIARERMITE 243
             +IE  + K         + V   + R +  TE
Sbjct: 400 YQKIEANLGKKLDEYKCVENEVMVLVERTQEATE 428

[Close]

BLAST of Carg23316-RA vs. TrEMBL
Match: tr|A0A1S3CFM7|A0A1S3CFM7_CUCME (DEAD-box ATP-dependent RNA helicase 39 OS=Cucumis melo OX=3656 GN=LOC103500395 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 1.4e-147
Identity = 298/368 (80.98%), Postives = 314/368 (85.33%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKFIGPLKHRASSHD QGFQTIL+TATMTKAVQKLIDEEFQGIVHLRTST
Sbjct: 283 MFDHGFGPDIRKFIGPLKHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTST 342

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENK+EALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFLGENQ
Sbjct: 343 LHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQ 402

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPAQ+RVENLKKFKSDD DCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 403 ISTVNYHGEVPAQKRVENLKKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 462

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD+ILATRIEEAI+KNESLESLTAD+VRRDIAR+R I
Sbjct: 463 YLHRTGRTARMGAKGKVTSLVGKKDDILATRIEEAIQKNESLESLTADSVRRDIARDR-I 522

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKAS-PAKTQKSGVRVSKSTK 300
           TE KTKN K +K S   +RAKS+TS A K SSVHSK E+GKAS   +TQK GV VSK  K
Sbjct: 523 TEHKTKNAKLIKAS-TGSRAKSATS-APKSSSVHSKGETGKASYSERTQKPGVPVSKLVK 582

Query: 301 PSRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQ 360
            SRN             SSE             SRR+P + IK SGQKLNVVGFRGRS+Q
Sbjct: 583 SSRN--------IPRKPSSE-------TKKQVASRRRPGSAIKSSGQKLNVVGFRGRSNQ 632

Query: 361 SDKRRSVS 368
            DKRRSVS
Sbjct: 643 FDKRRSVS 632

[Close]

BLAST of Carg23316-RA vs. TrEMBL
Match: tr|A0A2P5FER6|A0A2P5FER6_9ROSA (DEAD-box ATP-dependent RNA helicase OS=Trema orientalis OX=63057 GN=TorRG33x02_078740 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.1e-128
Identity = 257/363 (70.80%), Postives = 286/363 (78.79%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKF+ PLKHRAS  DGQGFQT+L+TATMTKAVQKLIDEEFQGI HLRTST
Sbjct: 287 MFDHGFGPDIRKFLAPLKHRASKPDGQGFQTVLVTATMTKAVQKLIDEEFQGIEHLRTST 346

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKK+ASARHDFIKLSGSENKMEALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQ
Sbjct: 347 LHKKVASARHDFIKLSGSENKMEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLSENQ 406

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA+QRVENL KFK+DD DCPTLVCTDLAARGLDLDVDHVIMFDFP NSID
Sbjct: 407 ISTVNYHGEVPAEQRVENLNKFKTDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSID 466

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD +LATRIEEA+RKNESLESL+ ++VRRDIAR R I
Sbjct: 467 YLHRTGRTARMGAKGKVTSLVAKKDAVLATRIEEAMRKNESLESLSVNSVRRDIARAR-I 526

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTKP 300
           TEQK ++EK  KV+K+R++ K++ S   K +          + PAK+ K G++VSKS KP
Sbjct: 527 TEQKGRHEKLFKVAKQRSKIKAADS--VKTTQTQGLKSKRASVPAKSAKPGIKVSKSVKP 586

Query: 301 SRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQS 360
           S               SSE                  R+    S  KLNVVGFRGRSS S
Sbjct: 587 S------SASGPRKPSSSERKQLG-----------SKRSSAVKSTSKLNVVGFRGRSSWS 629

Query: 361 DKR 364
           +K+
Sbjct: 647 NKK 629

[Close]

BLAST of Carg23316-RA vs. TrEMBL
Match: tr|A0A1R3HGC8|A0A1R3HGC8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_29111 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 1.9e-123
Identity = 253/369 (68.56%), Postives = 282/369 (76.42%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFD GFGPDIRKF+GPLK+RAS   GQGFQTIL+TATMTKAVQKLIDEEFQGI HLRTST
Sbjct: 281 MFDRGFGPDIRKFLGPLKNRASK-PGQGFQTILVTATMTKAVQKLIDEEFQGIQHLRTST 340

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENK+EALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFL ENQ
Sbjct: 341 LHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQ 400

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA+QRVENL KFKSD+ DCPTLVCTDLAARGLDLDVDHVIMFDFP NSID
Sbjct: 401 ISTVNYHGEVPAEQRVENLNKFKSDNGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSID 460

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD+ LA RIEEAIRKNESLESLT DNVRRD+AR R I
Sbjct: 461 YLHRTGRTARMGAKGKVTSLVAKKDSFLAERIEEAIRKNESLESLTVDNVRRDVARAR-I 520

Query: 241 TEQKTKNEKFVKVSKERNRAKS-STSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKSTK 300
           T+QK K+ K +KVS ++ ++K  S   + K SS+    +S   +PAK     V+ SK+ K
Sbjct: 521 TQQKEKSAKLIKVSNQKTKSKPVSDHTSGKKSSIAKSVKS--PTPAKPSNKMVKESKNIK 580

Query: 301 PSRNXXXXXXXXXXXXXSSEXXXXXXXXXXXXXSRRQPRNGIKPSGQKLNVVGFRGRSSQ 360
            ++                               ++   N +  +G KLNVVGFRGR+S 
Sbjct: 581 SAK--------------------------AFPVGKKNRSNKVNSTGMKLNVVGFRGRASS 619

Query: 361 SDKRRSVSG 369
           S K    SG
Sbjct: 641 SKKESFRSG 619

[Close]

BLAST of Carg23316-RA vs. TrEMBL
Match: tr|W9R456|W9R456_9ROSA (DEAD-box ATP-dependent RNA helicase 39 OS=Morus notabilis OX=981085 GN=L484_002724 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 2.7e-122
Identity = 235/297 (79.12%), Postives = 262/297 (88.22%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFDHGFGPDIRKF+GPLK+RAS  DGQGFQT+L+ ATMTKAVQ LIDEEFQGIVHLRTST
Sbjct: 291 MFDHGFGPDIRKFLGPLKNRASKPDGQGFQTVLVAATMTKAVQNLIDEEFQGIVHLRTST 350

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKK+ASARHDFIKLSGSENK+EALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQ
Sbjct: 351 LHKKVASARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLSENQ 410

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
            STVNYHGEVPA+QRVENLKKFK++D DCPTLVC+DLAARGLDLDVDHVIMFDFP NSID
Sbjct: 411 TSTVNYHGEVPAEQRVENLKKFKTEDGDCPTLVCSDLAARGLDLDVDHVIMFDFPLNSID 470

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSLV KKD  LATRIEEA+RKNESLESL+ ++VRRDIAR R I
Sbjct: 471 YLHRTGRTARMGAKGKVTSLVAKKDVALATRIEEAMRKNESLESLSVNSVRRDIARAR-I 530

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESGKASPAKTQKSGVRVSKS 298
           TEQK KNEK +KV+K+R+R    ++ + +   V SK  SG   PAK  K+ V+VSK+
Sbjct: 531 TEQKGKNEKLIKVAKQRSR---DSAKSYQDQGVKSKKASG---PAKFAKASVKVSKT 580

[Close]

BLAST of Carg23316-RA vs. TrEMBL
Match: tr|A0A2N9ILN9|A0A2N9ILN9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53270 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 2.7e-122
Identity = 231/280 (82.50%), Postives = 248/280 (88.57%), Query Frame = 0


Query: 1   MFDHGFGPDIRKFIGPLKHRASSHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTST 60
           MFD GFGPDIRKF+GPLK+R S   G+GFQT+L+TATMT+AVQKLIDEEFQGIVHLRTST
Sbjct: 268 MFDRGFGPDIRKFLGPLKNRVSKPGGEGFQTVLVTATMTQAVQKLIDEEFQGIVHLRTST 327

Query: 61  LHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQ 120
           LHKKIASARHDFIKLSGSENK+EALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFL ENQ
Sbjct: 328 LHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLDENQ 387

Query: 121 ISTVNYHGEVPAQQRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 180
           ISTVNYHGEVPA+QRVENLK+FKSDD DCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID
Sbjct: 388 ISTVNYHGEVPAEQRVENLKRFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSID 447

Query: 181 YLHRTGRTARMGAKGNVTSLVTKKDNILATRIEEAIRKNESLESLTADNVRRDIARERMI 240
           YLHRTGRTARMGAKG VTSL+ KKD ILATRIEEAIRKNESLESLT DNVRRDIAR R I
Sbjct: 448 YLHRTGRTARMGAKGKVTSLIAKKDLILATRIEEAIRKNESLESLTVDNVRRDIARSR-I 507

Query: 241 TEQKTKNEKFVKVSKERNRAKSSTSPAAKPSSVHSKDESG 281
           TEQK  N K VK+S E+N+       A+ P+    +  SG
Sbjct: 508 TEQKRINVKSVKISNEKNKITRKAKEASAPAKSSKRASSG 546

The following BLAST results are available for this feature:

BLAST of Carg23316-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936776.1	3.0e-181	100.00	DEAD-box ATP-dependent RNA helicase 39 isoform X1 [Cucurbita moschata]	[more]
XP_022936777.1	1.1e-178	92.93	DEAD-box ATP-dependent RNA helicase 39 isoform X2 [Cucurbita moschata]	[more]
XP_022976914.1	5.3e-170	89.97	DEAD-box ATP-dependent RNA helicase 39 [Cucurbita maxima]	[more]
XP_023536046.1	3.8e-152	87.77	DEAD-box ATP-dependent RNA helicase 39 [Cucurbita pepo subsp. pepo]	[more]
XP_008461901.1	2.2e-147	80.98	PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo]	[more]

BLAST of Carg23316-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09730.1	5.6e-113	78.38	RH39	[more]
AT1G59990.1	6.5e-21	32.84	DEA(D/H)-box RNA helicase family protein	[more]
AT3G58570.1	1.0e-18	28.76	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G01540.2	1.4e-18	29.38	DEAD box RNA helicase 1	[more]
AT3G06480.1	5.2e-18	31.58	DEAD box RNA helicase family protein	[more]

BLAST of Carg23316-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q56X76\|RH39_ARATH	1.0e-111	78.38	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 P...	[more]
sp\|Q5VRY0\|RH39_ORYSJ	5.2e-108	64.55	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q9VHP0\|DDX3_DROME	8.2e-21	31.49	ATP-dependent RNA helicase bel OS=Drosophila melanogaster OX=7227 GN=bel PE=1 SV...	[more]
sp\|Q9CWX9\|DDX47_MOUSE	1.8e-20	32.00	Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2...	[more]
sp\|P34580\|DDX47_CAEEL	4.0e-20	33.64	Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans OX=6239 G...	[more]

BLAST of Carg23316-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFM7\|A0A1S3CFM7_CUCME	1.4e-147	80.98	DEAD-box ATP-dependent RNA helicase 39 OS=Cucumis melo OX=3656 GN=LOC103500395 P...	[more]
tr\|A0A2P5FER6\|A0A2P5FER6_9ROSA	1.1e-128	70.80	DEAD-box ATP-dependent RNA helicase OS=Trema orientalis OX=63057 GN=TorRG33x02_0...	[more]
tr\|A0A1R3HGC8\|A0A1R3HGC8_9ROSI	1.9e-123	68.56	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_29111 PE=4 SV=1	[more]
tr\|W9R456\|W9R456_9ROSA	2.7e-122	79.12	DEAD-box ATP-dependent RNA helicase 39 OS=Morus notabilis OX=981085 GN=L484_0027...	[more]
tr\|A0A2N9ILN9\|A0A2N9ILN9_FAGSY	2.7e-122	82.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53270 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg23316	Carg23316	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg23316-RA	Carg23316-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23316-RA.CDS.6	Carg23316-RA.CDS.6	CDS
Carg23316-RA.CDS.5	Carg23316-RA.CDS.5	CDS
Carg23316-RA.CDS.4	Carg23316-RA.CDS.4	CDS
Carg23316-RA.CDS.3	Carg23316-RA.CDS.3	CDS
Carg23316-RA.CDS.2	Carg23316-RA.CDS.2	CDS
Carg23316-RA.CDS.1	Carg23316-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23316-RA.exon.6	Carg23316-RA.exon.6	exon
Carg23316-RA.exon.5	Carg23316-RA.exon.5	exon
Carg23316-RA.exon.4	Carg23316-RA.exon.4	exon
Carg23316-RA.exon.3	Carg23316-RA.exon.3	exon
Carg23316-RA.exon.2	Carg23316-RA.exon.2	exon
Carg23316-RA.exon.1	Carg23316-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 110..192 e-value: 4.3E-25 score: 99.4
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 81..192 e-value: 7.6E-25 score: 87.4
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 81..231 score: 16.658
IPR001650	Helicase, C-terminal	CDD	cd00079	HELICc	coord: 78..200 e-value: 6.50833E-34 score: 122.346
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 66..298 e-value: 2.8E-41 score: 143.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 284..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..368
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 312..333
None	No IPR available	PANTHER	PTHR24031:SF247	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	coord: 1..302
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 1..302
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 1..56 score: 6.504
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..216