Carg17474-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCACCTTGTTCTTCTGCGTGTTCGATCGTCATTTTTGAGCTTGTTTTCCATGGCTATGGAGTTGGAGGGCGTTGGCTGCTGCGTGGATGATAGGTCTCTGTGGCTTCGCTCTGTTTTGGAAGCGCTGATGGTGGAGTCTGTTTTGACTGCTGTGAACTCTCTCGCTTGGATTCTCACCACGGTGAGTGTTTTGTTTTGGCTTTTTCTTTGATGCGTTTCGCTTGTTGTGGATTCTACTGGTTTCTGGTTCTGATTTTTGCTCGTTGGAGCTTGAATTCTATGGCTCTCTTCATTTCTTCGCTATGTTCGCAGCTTACAAGCTTTCTCCTTCGTTGTTTGAAGTTATTTACTCATTCGTGAGTTATAATTGCTACAGGCGGGAAGTTTTAGCTGGAAATTTTGAGCATTGACTAGTCTGTGTGTGTGTGGAGAGAAGTATTTGTTCTAGTCTCTAGTGGTTAATTTAGAACTGGTTTTCGAACTGTGACAACGATTAAGCTTTCTTCCTCAGGCTTTGACCATTCCTTATTTAGATCGTATCCGAAATTCCTTGTGAAGATCTTTACATTCTGTGGAAACTTTGTTTGAATTCGGCAAATCCCGCCTGTTTTGGAGGTGGTAGTTAGAAACGGGACAGAATTTGCCCTTACTGTGGAATGGCTACTGTTTCATATGGTTCTTTTGAAATTTGTGTGTACTTTATTTAACTTTATCTATCTCTTTAGCTATCCTTGGGGCTTGGTGGTGTTTGTTGAAGCTTCATTATAGAATTTAGTGTCTGATGAACACAGCTTATTCTTTCTGATTGCTTGTGGACAGTTTCCTTTTTTGTTGTTGTAATCAATGGAAGTAATCTACAGTTATGTCAGAATCCTTAAGATCTTCCTATGTGCAAGGGAAGTAATTTAGAGTCGGAATCCTTAAGATCTTCTCCTTCCTAGGTAAGAGTTCAGATCCATTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTCCAAATCCACCACTAGCCGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCCTCTTTGGGCTTTCCCTTCTAGATCCACCACTAGCCGATATTGCCCTCTTTGGGCTTTCCCTTTTGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTACTAGGGGAAGGTTTCCACACCTTAGCAGATATTGTCCTCTTTAGGCTTTCCCTTTCGAGCTTCCGCCCAAGGCTAGGGGAAGGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCTCCAACCAATGTGGGACATCACAATCCACCCCCCATTCGGGGCACAGCGTCCTCGCTGGCACTCTTTCCTTCCTCCAATCGATGAGGGACCGTTCCAAAATCCACCCCTCTTTGGGGCCCAGCGTCCATACTGACACACCACCTCGTGTCTACCCCCATTCGGGAAATAGCGAGAAGGCTGGCACATCGTCCAGTGTCTGGCTCTAATACCATTTGTAACAGCCTAGATCCACCGCCAGTAGATATTGTCTTCTTAGGGCTTTCCCTTTCGGGCTTTCCCTTTCGGGCTTTCCCTCAAGGCTTCAAAACGCGTCTACTCGGAGAAGGTTTCCACGCCCTTATAAATTGTGATTTGTTCTCCTCCCCAACCAATGGGGGACATCACATCCTAACTCATCTTTCTTAAATCTTTCTTAAATTTTGTCTTACAACACTGTATAATGATTGTACTCTTTGATGAACCATACTTGGAATTTGTTACTATATCTGATACCTGCAGGCTTGTAATTTTGTTGATGAACACTTTGAATCTCAATTCACCTTCCAGGTAGGAGATCTGTTAAATGATGTCAATGCTCAACCAGGAATAGCTGCAATTGGGGAAAAGTAATGAAAGTTCCATTTCATTTATATTGCTTACTTTCTATTCTTCGTTCCGAGATAACTGATTTATACTACTTTCTTAGATTTCCTTTCGAAGAACTTCACGCTAAGAGGAATCCCGATGAGGAAAATGTCGATGGCAGTGAAACAGAGGATGATAAAGATGGAGATGATGTCGATGATGTCGATGATGATGCGAATAACCAGGATGGTGGGGAAGGTGGGGAAGGTGGTGAAGATTACTCGGCCGAAGAAGGGGATGACGGTGATCTGGAGGATGACCCGGCAGCAACTGGCAACGGAAGGGCTGGAGGTAATGAGGAAGGTGACGGAGGAGAAGAAGATGACGACGACGATGTGAATGACGAAGATGAAGACGACGACGACGATGAAGATTTCTCGGCAGAAGAAGGTGACGAGAGTGATCAGGAGGATGACCCAGAAGTAAGTGGTAATGGAAGAATTGAAGATGGTGGAGAGGATGAAGATGAAGACGACGATGACGGAGATGAGGATGATGACGACACCGACGAAGAAGATGAGGATGAGGACGAAGACGAGGACGAGGAAACACTTGAACCACCAGCTAAGAGAAGAAAGTGA CCACCTTGTTCTTCTGCGTGTTCGATCGTCATTTTTGAGCTTGTTTTCCATGGCTATGGAGTTGGAGGGCGTTGGCTGCTGCGTGGATGATAGGTCTCTGTGGCTTCGCTCTGTTTTGGAAGCGCTGATGGTGGAGTCTGTTTTGACTGCTGTGAACTCTCTCGCTTGGATTCTCACCACGGTAGGAGATCTGTTAAATGATGTCAATGCTCAACCAGGAATAGCTGCAATTGGGGAAAAATTTCCTTTCGAAGAACTTCACGCTAAGAGGAATCCCGATGAGGAAAATGTCGATGGCAGTGAAACAGAGGATGATAAAGATGGAGATGATGTCGATGATGTCGATGATGATGCGAATAACCAGGATGGTGGGGAAGGTGGGGAAGGTGGTGAAGATTACTCGGCCGAAGAAGGGGATGACGGTGATCTGGAGGATGACCCGGCAGCAACTGGCAACGGAAGGGCTGGAGGTAATGAGGAAGGTGACGGAGGAGAAGAAGATGACGACGACGATGTGAATGACGAAGATGAAGACGACGACGACGATGAAGATTTCTCGGCAGAAGAAGGTGACGAGAGTGATCAGGAGGATGACCCAGAAGTAAGTGGTAATGGAAGAATTGAAGATGGTGGAGAGGATGAAGATGAAGACGACGATGACGGAGATGAGGATGATGACGACACCGACGAAGAAGATGAGGATGAGGACGAAGACGAGGACGAGGAAACACTTGAACCACCAGCTAAGAGAAGAAAGTGA ATGGCTATGGAGTTGGAGGGCGTTGGCTGCTGCGTGGATGATAGGTCTCTGTGGCTTCGCTCTGTTTTGGAAGCGCTGATGGTGGAGTCTGTTTTGACTGCTGTGAACTCTCTCGCTTGGATTCTCACCACGGTAGGAGATCTGTTAAATGATGTCAATGCTCAACCAGGAATAGCTGCAATTGGGGAAAAATTTCCTTTCGAAGAACTTCACGCTAAGAGGAATCCCGATGAGGAAAATGTCGATGGCAGTGAAACAGAGGATGATAAAGATGGAGATGATGTCGATGATGTCGATGATGATGCGAATAACCAGGATGGTGGGGAAGGTGGGGAAGGTGGTGAAGATTACTCGGCCGAAGAAGGGGATGACGGTGATCTGGAGGATGACCCGGCAGCAACTGGCAACGGAAGGGCTGGAGGTAATGAGGAAGGTGACGGAGGAGAAGAAGATGACGACGACGATGTGAATGACGAAGATGAAGACGACGACGACGATGAAGATTTCTCGGCAGAAGAAGGTGACGAGAGTGATCAGGAGGATGACCCAGAAGTAAGTGGTAATGGAAGAATTGAAGATGGTGGAGAGGATGAAGATGAAGACGACGATGACGGAGATGAGGATGATGACGACACCGACGAAGAAGATGAGGATGAGGACGAAGACGAGGACGAGGAAACACTTGAACCACCAGCTAAGAGAAGAAAGTGA MAMELEGVGCCVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAAIGEKFPFEELHAKRNPDEENVDGSETEDDKDGDDVDDVDDDANNQDGGEGGEGGEDYSAEEGDDGDLEDDPAATGNGRAGGNEEGDGGEEDDDDDVNDEDEDDDDDEDFSAEEGDESDQEDDPEVSGNGRIEDGGEDEDEDDDDGDEDDDDTDEEDEDEDEDEDEETLEPPAKRRK
BLAST of Carg17474-RA vs. NCBI nr
Match: XP_022938177.1 (prostatic spermine-binding protein-like [Cucurbita moschata]) HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37 Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0
BLAST of Carg17474-RA vs. NCBI nr
Match: XP_023536814.1 (prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37 Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0
BLAST of Carg17474-RA vs. NCBI nr
Match: XP_022965909.1 (prostatic spermine-binding protein-like [Cucurbita maxima]) HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33 Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0
BLAST of Carg17474-RA vs. NCBI nr
Match: XP_022999302.1 (nucleolin-like [Cucurbita maxima]) HSP 1 Score: 135.2 bits (339), Expect = 2.9e-28 Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 0
BLAST of Carg17474-RA vs. NCBI nr
Match: XP_023547167.1 (nucleolin-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 134.0 bits (336), Expect = 6.5e-28 Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0
BLAST of Carg17474-RA vs. TrEMBL
Match: tr|A0A0A0LJ21|A0A0A0LJ21_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008670 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 5.8e-25 Identity = 61/83 (73.49%), Postives = 66/83 (79.52%), Query Frame = 0
BLAST of Carg17474-RA vs. TrEMBL
Match: tr|A0A1S3C4Q0|A0A1S3C4Q0_CUCME (prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103497007 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24 Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 0
BLAST of Carg17474-RA vs. TrEMBL
Match: tr|A0A1S3C539|A0A1S3C539_CUCME (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC103496993 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 3.6e-11 Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 0
BLAST of Carg17474-RA vs. TrEMBL
Match: tr|A0A2P5FU69|A0A2P5FU69_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_030880 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 8.1e-11 Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 0
BLAST of Carg17474-RA vs. TrEMBL
Match: tr|A0A2P5D5P1|A0A2P5D5P1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_095090 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 8.1e-11 Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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