Carg17474 (gene) Silver-seed gourd

NameCarg17474
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprostatic spermine-binding protein-like
LocationCucurbita_argyrosperma_scaffold_084 : 339276 .. 341765 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCTTGTTCTTCTGCGTGTTCGATCGTCATTTTTGAGCTTGTTTTCCATGGCTATGGAGTTGGAGGGCGTTGGCTGCTGCGTGGATGATAGGTCTCTGTGGCTTCGCTCTGTTTTGGAAGCGCTGATGGTGGAGTCTGTTTTGACTGCTGTGAACTCTCTCGCTTGGATTCTCACCACGGTGAGTGTTTTGTTTTGGCTTTTTCTTTGATGCGTTTCGCTTGTTGTGGATTCTACTGGTTTCTGGTTCTGATTTTTGCTCGTTGGAGCTTGAATTCTATGGCTCTCTTCATTTCTTCGCTATGTTCGCAGCTTACAAGCTTTCTCCTTCGTTGTTTGAAGTTATTTACTCATTCGTGAGTTATAATTGCTACAGGCGGGAAGTTTTAGCTGGAAATTTTGAGCATTGACTAGTCTGTGTGTGTGTGGAGAGAAGTATTTGTTCTAGTCTCTAGTGGTTAATTTAGAACTGGTTTTCGAACTGTGACAACGATTAAGCTTTCTTCCTCAGGCTTTGACCATTCCTTATTTAGATCGTATCCGAAATTCCTTGTGAAGATCTTTACATTCTGTGGAAACTTTGTTTGAATTCGGCAAATCCCGCCTGTTTTGGAGGTGGTAGTTAGAAACGGGACAGAATTTGCCCTTACTGTGGAATGGCTACTGTTTCATATGGTTCTTTTGAAATTTGTGTGTACTTTATTTAACTTTATCTATCTCTTTAGCTATCCTTGGGGCTTGGTGGTGTTTGTTGAAGCTTCATTATAGAATTTAGTGTCTGATGAACACAGCTTATTCTTTCTGATTGCTTGTGGACAGTTTCCTTTTTTGTTGTTGTAATCAATGGAAGTAATCTACAGTTATGTCAGAATCCTTAAGATCTTCCTATGTGCAAGGGAAGTAATTTAGAGTCGGAATCCTTAAGATCTTCTCCTTCCTAGGTAAGAGTTCAGATCCATTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTCCAAATCCACCACTAGCCGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCCTCTTTGGGCTTTCCCTTCTAGATCCACCACTAGCCGATATTGCCCTCTTTGGGCTTTCCCTTTTGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTACTAGGGGAAGGTTTCCACACCTTAGCAGATATTGTCCTCTTTAGGCTTTCCCTTTCGAGCTTCCGCCCAAGGCTAGGGGAAGGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCTCCAACCAATGTGGGACATCACAATCCACCCCCCATTCGGGGCACAGCGTCCTCGCTGGCACTCTTTCCTTCCTCCAATCGATGAGGGACCGTTCCAAAATCCACCCCTCTTTGGGGCCCAGCGTCCATACTGACACACCACCTCGTGTCTACCCCCATTCGGGAAATAGCGAGAAGGCTGGCACATCGTCCAGTGTCTGGCTCTAATACCATTTGTAACAGCCTAGATCCACCGCCAGTAGATATTGTCTTCTTAGGGCTTTCCCTTTCGGGCTTTCCCTTTCGGGCTTTCCCTCAAGGCTTCAAAACGCGTCTACTCGGAGAAGGTTTCCACGCCCTTATAAATTGTGATTTGTTCTCCTCCCCAACCAATGGGGGACATCACATCCTAACTCATCTTTCTTAAATCTTTCTTAAATTTTGTCTTACAACACTGTATAATGATTGTACTCTTTGATGAACCATACTTGGAATTTGTTACTATATCTGATACCTGCAGGCTTGTAATTTTGTTGATGAACACTTTGAATCTCAATTCACCTTCCAGGTAGGAGATCTGTTAAATGATGTCAATGCTCAACCAGGAATAGCTGCAATTGGGGAAAAGTAATGAAAGTTCCATTTCATTTATATTGCTTACTTTCTATTCTTCGTTCCGAGATAACTGATTTATACTACTTTCTTAGATTTCCTTTCGAAGAACTTCACGCTAAGAGGAATCCCGATGAGGAAAATGTCGATGGCAGTGAAACAGAGGATGATAAAGATGGAGATGATGTCGATGATGTCGATGATGATGCGAATAACCAGGATGGTGGGGAAGGTGGGGAAGGTGGTGAAGATTACTCGGCCGAAGAAGGGGATGACGGTGATCTGGAGGATGACCCGGCAGCAACTGGCAACGGAAGGGCTGGAGGTAATGAGGAAGGTGACGGAGGAGAAGAAGATGACGACGACGATGTGAATGACGAAGATGAAGACGACGACGACGATGAAGATTTCTCGGCAGAAGAAGGTGACGAGAGTGATCAGGAGGATGACCCAGAAGTAAGTGGTAATGGAAGAATTGAAGATGGTGGAGAGGATGAAGATGAAGACGACGATGACGGAGATGAGGATGATGACGACACCGACGAAGAAGATGAGGATGAGGACGAAGACGAGGACGAGGAAACACTTGAACCACCAGCTAAGAGAAGAAAGTGA

mRNA sequence

CCACCTTGTTCTTCTGCGTGTTCGATCGTCATTTTTGAGCTTGTTTTCCATGGCTATGGAGTTGGAGGGCGTTGGCTGCTGCGTGGATGATAGGTCTCTGTGGCTTCGCTCTGTTTTGGAAGCGCTGATGGTGGAGTCTGTTTTGACTGCTGTGAACTCTCTCGCTTGGATTCTCACCACGGTAGGAGATCTGTTAAATGATGTCAATGCTCAACCAGGAATAGCTGCAATTGGGGAAAAATTTCCTTTCGAAGAACTTCACGCTAAGAGGAATCCCGATGAGGAAAATGTCGATGGCAGTGAAACAGAGGATGATAAAGATGGAGATGATGTCGATGATGTCGATGATGATGCGAATAACCAGGATGGTGGGGAAGGTGGGGAAGGTGGTGAAGATTACTCGGCCGAAGAAGGGGATGACGGTGATCTGGAGGATGACCCGGCAGCAACTGGCAACGGAAGGGCTGGAGGTAATGAGGAAGGTGACGGAGGAGAAGAAGATGACGACGACGATGTGAATGACGAAGATGAAGACGACGACGACGATGAAGATTTCTCGGCAGAAGAAGGTGACGAGAGTGATCAGGAGGATGACCCAGAAGTAAGTGGTAATGGAAGAATTGAAGATGGTGGAGAGGATGAAGATGAAGACGACGATGACGGAGATGAGGATGATGACGACACCGACGAAGAAGATGAGGATGAGGACGAAGACGAGGACGAGGAAACACTTGAACCACCAGCTAAGAGAAGAAAGTGA

Coding sequence (CDS)

ATGGCTATGGAGTTGGAGGGCGTTGGCTGCTGCGTGGATGATAGGTCTCTGTGGCTTCGCTCTGTTTTGGAAGCGCTGATGGTGGAGTCTGTTTTGACTGCTGTGAACTCTCTCGCTTGGATTCTCACCACGGTAGGAGATCTGTTAAATGATGTCAATGCTCAACCAGGAATAGCTGCAATTGGGGAAAAATTTCCTTTCGAAGAACTTCACGCTAAGAGGAATCCCGATGAGGAAAATGTCGATGGCAGTGAAACAGAGGATGATAAAGATGGAGATGATGTCGATGATGTCGATGATGATGCGAATAACCAGGATGGTGGGGAAGGTGGGGAAGGTGGTGAAGATTACTCGGCCGAAGAAGGGGATGACGGTGATCTGGAGGATGACCCGGCAGCAACTGGCAACGGAAGGGCTGGAGGTAATGAGGAAGGTGACGGAGGAGAAGAAGATGACGACGACGATGTGAATGACGAAGATGAAGACGACGACGACGATGAAGATTTCTCGGCAGAAGAAGGTGACGAGAGTGATCAGGAGGATGACCCAGAAGTAAGTGGTAATGGAAGAATTGAAGATGGTGGAGAGGATGAAGATGAAGACGACGATGACGGAGATGAGGATGATGACGACACCGACGAAGAAGATGAGGATGAGGACGAAGACGAGGACGAGGAAACACTTGAACCACCAGCTAAGAGAAGAAAGTGA

Protein sequence

MAMELEGVGCCVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAAIGEKFPFEELHAKRNPDEENVDGSETEDDKDGDDVDDVDDDANNQDGGEGGEGGEDYSAEEGDDGDLEDDPAATGNGRAGGNEEGDGGEEDDDDDVNDEDEDDDDDEDFSAEEGDESDQEDDPEVSGNGRIEDGGEDEDEDDDDGDEDDDDTDEEDEDEDEDEDEETLEPPAKRRK
BLAST of Carg17474 vs. NCBI nr
Match: XP_022938177.1 (prostatic spermine-binding protein-like [Cucurbita moschata])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0

Query: 1  MAMELEGVGCCVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAA 60
          MAMELEGVGCCVDDRSLWLR+VLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAA
Sbjct: 1  MAMELEGVGCCVDDRSLWLRTVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAA 60

Query: 61 IGEKFPFEELHAKRNPDEENVDGS 85
          IGEKFPFEELHAK NPDEEN+DGS
Sbjct: 61 IGEKFPFEELHAKSNPDEENIDGS 84

BLAST of Carg17474 vs. NCBI nr
Match: XP_023536814.1 (prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 1  MAMELEGVGCCVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAA 60
          MAMELEGVGCCVDDRSLWLRSVLEAL VESVLTAVNSLAWILTTVGDLLNDVNAQPGIAA
Sbjct: 1  MAMELEGVGCCVDDRSLWLRSVLEALTVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAA 60

Query: 61 IGEKFPFEELHAKRNPDEENVDGS 85
          IGEKFPFEELHAK NPDEEN+DGS
Sbjct: 61 IGEKFPFEELHAKSNPDEENIDGS 84

BLAST of Carg17474 vs. NCBI nr
Match: XP_022965909.1 (prostatic spermine-binding protein-like [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 1  MAMELEGVGCCVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAA 60
          MAMELEGVG CVDDRSLWL SVLEALMVESVLTAVNSLAWILTT GDLLN+VNA  G+AA
Sbjct: 1  MAMELEGVGYCVDDRSLWLCSVLEALMVESVLTAVNSLAWILTTAGDLLNNVNAPTGLAA 60

Query: 61 IGEKFPFEELHAKRNPDEENVDGSE 86
          +GEKFPFEELHAK NPDEENVDGSE
Sbjct: 61 VGEKFPFEELHAKSNPDEENVDGSE 85

BLAST of Carg17474 vs. NCBI nr
Match: XP_022999302.1 (nucleolin-like [Cucurbita maxima])

HSP 1 Score: 135.2 bits (339), Expect = 2.9e-28
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 0

Query: 3  MELEGVGCCVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAAIG 62
          MELEGVG CVDD SLW RSVLEAL VE+VLTA NSLAW L T G LLNDVNA PG AAIG
Sbjct: 1  MELEGVGYCVDDTSLWFRSVLEALTVETVLTAANSLAWFLATAGALLNDVNAPPGFAAIG 60

Query: 63 EKFPFEELHAKRNPDEENVDG 84
          +KFPFEELHAK NPD+ENVDG
Sbjct: 61 KKFPFEELHAKNNPDKENVDG 81

BLAST of Carg17474 vs. NCBI nr
Match: XP_023547167.1 (nucleolin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 6.5e-28
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0

Query: 3  MELEGVGCCVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAAIG 62
          MELEGVG CVDD SLW RSVLEAL VE+VLTA NSL+W L T G LLNDVNA PG AAIG
Sbjct: 1  MELEGVGYCVDDTSLWFRSVLEALTVETVLTAANSLSWFLATAGALLNDVNAPPGFAAIG 60

Query: 63 EKFPFEELHAKRNPDEENVDG 84
          +KFPFEELHAK NPD+ENVDG
Sbjct: 61 KKFPFEELHAKNNPDKENVDG 81

BLAST of Carg17474 vs. TrEMBL
Match: tr|A0A0A0LJ21|A0A0A0LJ21_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008670 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.8e-25
Identity = 61/83 (73.49%), Postives = 66/83 (79.52%), Query Frame = 0

Query: 3  MELEGVGCCVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAAIG 62
          MEL+ VG  +DD SLW  SVLEAL VE++LTA NSLAW LTT G LLNDVNA PG  AIG
Sbjct: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60

Query: 63 EKFPFEELHAKRNPDEENVDGSE 86
          + FPFEELHAK NPD ENVDGSE
Sbjct: 61 KNFPFEELHAKNNPDRENVDGSE 83

BLAST of Carg17474 vs. TrEMBL
Match: tr|A0A1S3C4Q0|A0A1S3C4Q0_CUCME (prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103497007 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 0

Query: 3  MELEGVGCCVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAAIG 62
          MEL+ VG  +DD SLW  SVLEAL VE++LTA NSLAW LTT G LLNDVNA PG  AIG
Sbjct: 1  MELDKVGYSLDDSSLWFPSVLEALTVETLLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60

Query: 63 EKFPFEELHAKRNPDEENVDGSE 86
          + FPF+ELHAK NPD ENVDGSE
Sbjct: 61 KNFPFKELHAKNNPDRENVDGSE 83

BLAST of Carg17474 vs. TrEMBL
Match: tr|A0A1S3C539|A0A1S3C539_CUCME (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC103496993 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.6e-11
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 3  MELEGVGCCVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAAIG 62
          MEL+ V     +R++W RSVLEA+ VE+V T  NSLA +L   G +LN  N  PG+AAI 
Sbjct: 1  MELDCVSFV--ERTMWERSVLEAMAVETVFTTANSLACLLAVAGAMLNIANGTPGLAAIE 60

Query: 63 EKFPFEELHAKRNPDE 79
          E+FPF ELH K  PD+
Sbjct: 61 ERFPFSELHKKERPDQ 74

BLAST of Carg17474 vs. TrEMBL
Match: tr|A0A2P5FU69|A0A2P5FU69_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_030880 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.1e-11
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 11 CVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAAIGEKFPFEEL 70
          C  +RS+ LRSV+EA++VE+VLTA  SLA +L T G LLNDVN    + AI E+FPF+EL
Sbjct: 7  CPKERSIGLRSVMEAMVVETVLTAGKSLALLLFTTGSLLNDVNMLSKLVAIDERFPFDEL 66

Query: 71 HAKRNPDEEN 81
          H  + P +EN
Sbjct: 67 HKIKRPVQEN 76

BLAST of Carg17474 vs. TrEMBL
Match: tr|A0A2P5D5P1|A0A2P5D5P1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_095090 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.1e-11
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 11 CVDDRSLWLRSVLEALMVESVLTAVNSLAWILTTVGDLLNDVNAQPGIAAIGEKFPFEEL 70
          C  +RS+ LRSV+EA++VE+VLTA  SLA +L T G LLNDVN    + AI E+FPF+EL
Sbjct: 7  CPKERSIGLRSVMEAMVVETVLTAGKSLALLLFTTGSLLNDVNMLSKLVAIDERFPFDEL 66

Query: 71 HAKRNPDEEN 81
            K+ P +EN
Sbjct: 67 RQKKRPVQEN 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022938177.11.2e-3796.43prostatic spermine-binding protein-like [Cucurbita moschata][more]
XP_023536814.12.6e-3796.43prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo][more]
XP_022965909.11.8e-3389.41prostatic spermine-binding protein-like [Cucurbita maxima][more]
XP_022999302.12.9e-2881.48nucleolin-like [Cucurbita maxima][more]
XP_023547167.16.5e-2880.25nucleolin-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LJ21|A0A0A0LJ21_CUCSA5.8e-2573.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008670 PE=4 SV=1[more]
tr|A0A1S3C4Q0|A0A1S3C4Q0_CUCME1.7e-2472.29prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103497007 ... [more]
tr|A0A1S3C539|A0A1S3C539_CUCME3.6e-1152.63phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3... [more]
tr|A0A2P5FU69|A0A2P5FU69_9ROSA8.1e-1155.71Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_030880 PE=4 S... [more]
tr|A0A2P5D5P1|A0A2P5D5P1_PARAD8.1e-1155.71Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_095090 PE... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17474-RACarg17474-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..182
NoneNo IPR availablePANTHERPTHR35711FAMILY NOT NAMEDcoord: 146..236
coord: 3..167