Carg10225-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCTCTCTCTCTCTCAAATTTTACTTGGAAGGAAAATTTCCCAGTTTGTTTAGCTCTGATCCTGGAACACAGAGTTTCAATGCCTTCTGTTTCTGGGAAAGTTGGAAATTAGAAGAAATATCTTATTCGATCGTGTTTTTATGTTTTTTCGCAGCTTATAAACTTGAATTTCTGTGTCGTTGTCTATCCATAAAAATCGATTGTTTTCTGAATTTGAGCAAACTCTTGAGTTCGTGAATTCTGTGTATTAATGAGGTATCGTGATACTGATGTTGGGGAATATTTCTCTTGAGCTGGCTCAAGGGAAGAAAAGATCGACTATTGGATATAATTGTTAGTGTTTAGTTGTCAATAATTCAAAATCTGCACCTATTTCAGGATATTGGGACCAAAACTATAGTTTTGCTTGAATATCCAGTTGCTTCACTGCCTCCATATTGTTTTCATTCTGGTTTTGTTCGTTTATTACCATTGTTTTTGAAGCATATGCCAGTTTGTAAATTACACTCCGTTGTTCTTTCGTTAGATTATATATACATTGGAACTCGATAACCTGTTCTTTATCATATTCAACTTTTATTTGTGTTCGGTGGAACTCTTTGGCTGGATTGTACCATTTATAATTGCATATGTTGTTTCAACAATTCATCAGTGTGTTGTTTACAGTGCTTGCAGATTTTGACTCCATCAGTACCCTCTATATTTCCTCATCCCCACCAAAGCCAAAAAAGAAGGAAAATAAATAATGTGGCAGTATCTTGAATAGCCTTTTTCTGCAATATTAGAAATTATCCTTCCATATGCTTCTAGGTTGCATTTTTATTGCGTCTTTTATGACTGTAAAAGGTGAAACGGAAAAGATATCGATGCAGTATGTCATTCTTTAGGCTTTATTTTTTCAGCTAGTGTTTATATGTTAAACATGACAGTAATATTAACTTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGAGAAGATCCACGATGTCCGCGTTGATCCTGAAAATGGAGCGGGAACGGTAAATTAAAACTTTTCAACAATTTAATGAAAGATCGAGTCAATATCAGATTCATATTTTCATGCTTCATTCCTCTGTTTATCAAGCAAAAGTCTAATGCTTTCTTTCAAAACGGTTCTCAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTGTAAGTTGTAAAAGAAATATCTCATTAGTTTATCAATTTTCTTTTTTAAAGATTGTGAATGAGAGGATGAACGTGAAAGTGGGTGAAGAATTGTGATGGTTTCAAATGTGGTTCCTGCAGAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAACTCAGTAAGGAATATGGCTTTTCCAGCTTGTAGCTACGTGATTGTTGTCTGAGATAATGTGGCATTTTAACCTTAAAAATACGTATTGTTTGTTATCCTAAACTATACAAAGAATAATCCTGATCAGAGTTTGCTCTGAGGCTTGTGAAATCATCTTGTTGGGGTGGATGTTCATGTTCAATGACTGAATAAAGTAGAAGAAAGGCTATATTCATAGGCATTTCAATTCATGTTCATGTTCATGTTCTGTTGTATAAGAAGTTCGAAAAGGTATTTTAAATATTTCTTTTCAACATGTCAGACACAGAAATATATTGAGACAACCATAGAAGTTTTCTTTAAGGTTGAAGCATTGAAGTAACGGTGACTGATTTTCAATACCAAAAATCTTGATGCGGAGTTCCATCTTTCGGAATGAAAATAAAAGTCAAAGTCGAAGAAACTGGAATAATGAATGAACAACTATATTGACCAGAAAATCGAAACAGTAAAAATAGTCCCAAGTCCTAAGTTTACGCAGCAGCATTTGTTCTAATAAAACACTTTCGGTATTATAATTCTCCAAGAAGAAATTCTTTAAAAGAAAAAAAAATGTAATAAGGAAAAACAAAAGCAAAGATAATAGAGAGTTGGGAAAAAGAAAGGGTATTGTTTTTAGGCCTTTTGCTTCCCTTTTCTAATTCTATCAAGCTCAGCTTCAGCATCGTTCAACTGCTGTTTCAACGTTGATATTTTCCTCTCCAAGTCTTCCACCGAGTCTCTGCTAGTCGCTGGTTCATATGGCCTCACAAACTTACCTGAAAAGTCCTTCAGAGCTTCAACCCCAGTCACCTGCAATACAGTGCACAACAAGTTTGGAAATCAAAGCTCTTCCCAATCTTTTTCTTTTGCTTCTTTCTGTTTTCAAATCAAAGCTCTTGCTTGGCATCTTCAACTTTGGTGTTTTATCCACTAAGTTACGTTCATACTAACTAAAAATAAGATTGATATAACAGAACACGATATGTATAAAAGAGTTAGCAACTTGTCTCAGACGGTACAACAAATCGGTACTCACTACTATAAGACTAGGATCGGGTGAATAGGCACCTATTGCCATTTCTACCTTCCTTCTCCTCTCAAGGTCTACCAAACTTCAATAATTATATAGGAGAGAATGATAAGTTTAAAAAACAAAATATAATTCAAGACTTGGAACAAAACCCAATGGCAGACATGAAGGAAAAAGCATTTATGGAGTAGATGATAAAAGAAAACAGAATGAATCTCGATATATTGAGACAAATATGTGCAGAGAAAGCAGTACCTCTTGAGGCAGTAATGGCAA CTCTCTCTCTCTCTCAAATTTTACTTGGAAGGAAAATTTCCCAGTTTGTTTAGCTCTGATCCTGGAACACAGAGTTTCAATGCCTTCTGTTTCTGGGAAAGTTGGAAATTAGAAGAAATATCTTATTCGATCGTGTTTTTATGTTTTTTCGCAGCTTATAAACTTGAATTTCTGTGTCGTTGTCTATCCATAAAAATCGATTGTTTTCTGAATTTGAGCAAACTCTTGAGTTCGTGAATTCTGTGTATTAATGAGGTATCGTGATACTGATGTTGGGGAATATTTCTCTTGAGCTGGCTCAAGGGAAGAAAAGATCGACTATTGGATATAATTGTTAGTGTTTAGTTGTCAATAATTCAAAATCTGCACCTATTTCAGGATATTGGGACCAAAACTATAGTTTTGCTTGAATATCCAGTTGCTTCACTGCCTCCATATTGTTTTCATTCTGGTTTTGTTCGTTTATTACCATTGTTTTTGAAGCATATGCCAGTTTGTAAATTACACTCCGTTGTTCTTTCGTTAGATTATATATACATTGGAACTCGATAACCTGTTCTTTATCATATTCAACTTTTATTTGTGTTCGGTGGAACTCTTTGGCTGGATTGTACCATTTATAATTGCATATGTTGTTTCAACAATTCATCAGTGTGTTGTTTACAGTGCTTGCAGATTTTGACTCCATCAGTACCCTCTATATTTCCTCATCCCCACCAAAGCCAAAAAAGAAGGAAAATAAATAATGTGGCAGTATCTTGAATAGCCTTTTTCTGCAATATTAGAAATTATCCTTCCATATGCTTCTAGGTTGCATTTTTATTGCGTCTTTTATGACTGTAAAAGGTGAAACGGAAAAGATATCGATGCAGTATGTCATTCTTTAGGCTTTATTTTTTCAGCTAGTGTTTATATGTTAAACATGACAGTAATATTAACTTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGAGAAGATCCACGATGTCCGCGTTGATCCTGAAAATGGAGCGGGAACGCAAAAGTCTAATGCTTTCTTTCAAAACGGTTCTCAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAACTCAGTAAGGAATATGGCTTTTCCAGCTTGTAGCTACGTGATTGTTGTCTGAGATAATGTGGCATTTTAACCTTAAAAATACGTATTGTTTGTTATCCTAAACTATACAAAGAATAATCCTGATCAGAGTTTGCTCTGAGGCTTGTGAAATCATCTTGTTGGGGTGGATGTTCATGTTCAATGACTGAATAAAGTAGAAGAAAGGCTATATTCATAGGCATTTCAATTCATGTTCATGTTCATGTTCTGTTGTATAAGAAGTTCGAAAAGGTATTTTAAATATTTCTTTTCAACATGTCAGACACAGAAATATATTGAGACAACCATAGAAGTTTTCTTTAAGGTTGAAGCATTGAAGTAACGGTGACTGATTTTCAATACCAAAAATCTTGATGCGGAGTTCCATCTTTCGGAATGAAAATAAAAGTCAAAGTCGAAGAAACTGGAATAATGAATGAACAACTATATTGACCAGAAAATCGAAACAGTAAAAATAGTCCCAAGTCCTAAGTTTACGCAGCAGCATTTGTTCTAATAAAACACTTTCGGTATTATAATTCTCCAAGAAGAAATTCTTTAAAAGAAAAAAAAATGTAATAAGGAAAAACAAAAGCAAAGATAATAGAGAGTTGGGAAAAAGAAAGGGTATTGTTTTTAGGCCTTTTGCTTCCCTTTTCTAATTCTATCAAGCTCAGCTTCAGCATCGTTCAACTGCTGTTTCAACGTTGATATTTTCCTCTCCAAGTCTTCCACCGAGTCTCTGCTAGTCGCTGGTTCATATGGCCTCACAAACTTACCTGAAAAGTCCTTCAGAGCTTCAACCCCAGTCACCTGCAATACAGTGCACAACAAGTTTGGAAATCAAAGCTCTTCCCAATCTTTTTCTTTTGCTTCTTTCTGTTTTCAAATCAAAGCTCTTGCTTGGCATCTTCAACTTTGGTGTTTTATCCACTAAGTTACGTTCATACTAACTAAAAATAAGATTGATATAACAGAACACGATATGTATAAAAGAGTTAGCAACTTGTCTCAGACGGTACAACAAATCGGTACTCACTACTATAAGACTAGGATCGGGTGAATAGGCACCTATTGCCATTTCTACCTTCCTTCTCCTCTCAAGGTCTACCAAACTTCAATAATTATATAGGAGAGAATGATAAGTTTAAAAAACAAAATATAATTCAAGACTTGGAACAAAACCCAATGGCAGACATGAAGGAAAAAGCATTTATGGAGTAGATGATAAAAGAAAACAGAATGAATCTCGATATATTGAGACAAATATGTGCAGAGAAAGCAGTACCTCTTGAGGCAGTAATGGCAA ATGTTAAACATGACAGTAATATTAACTTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGAGAAGATCCACGATGTCCGCGTTGATCCTGAAAATGGAGCGGGAACGCAAAAGTCTAATGCTTTCTTTCAAAACGGTTCTCAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAA MLNMTVILTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
BLAST of Carg10225-RA vs. NCBI nr
Match: XP_022145475.1 (ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia]) HSP 1 Score: 191.0 bits (484), Expect = 2.2e-45 Identity = 91/115 (79.13%), Postives = 100/115 (86.96%), Query Frame = 0
BLAST of Carg10225-RA vs. NCBI nr
Match: KGN46212.1 (hypothetical protein Csa_6G075130 [Cucumis sativus]) HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43 Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 0
BLAST of Carg10225-RA vs. NCBI nr
Match: XP_022959205.1 (ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita moschata] >XP_023006240.1 ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita maxima] >XP_023547849.1 ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43 Identity = 91/109 (83.49%), Postives = 92/109 (84.40%), Query Frame = 0
BLAST of Carg10225-RA vs. NCBI nr
Match: XP_022959206.1 (ubiquitin-related modifier 1 homolog 2-like isoform X2 [Cucurbita moschata] >XP_023006241.1 ubiquitin-related modifier 1 homolog 2-like isoform X2 [Cucurbita maxima] >XP_023547850.1 ubiquitin-related modifier 1 homolog 2-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42 Identity = 90/104 (86.54%), Postives = 90/104 (86.54%), Query Frame = 0
BLAST of Carg10225-RA vs. NCBI nr
Match: XP_022145476.1 (ubiquitin-related modifier 1 homolog 2 isoform X2 [Momordica charantia]) HSP 1 Score: 176.4 bits (446), Expect = 5.6e-41 Identity = 86/109 (78.90%), Postives = 92/109 (84.40%), Query Frame = 0
BLAST of Carg10225-RA vs. TAIR10
Match: AT2G45695.1 (Ubiquitin related modifier 1) HSP 1 Score: 161.8 bits (408), Expect = 2.6e-40 Identity = 80/109 (73.39%), Postives = 85/109 (77.98%), Query Frame = 0
BLAST of Carg10225-RA vs. TAIR10
Match: AT3G61113.1 (Ubiquitin related modifier 1) HSP 1 Score: 153.7 bits (387), Expect = 7.0e-38 Identity = 75/108 (69.44%), Postives = 82/108 (75.93%), Query Frame = 0
BLAST of Carg10225-RA vs. Swiss-Prot
Match: sp|A0MDQ1|URM11_ARATH (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1 PE=3 SV=2) HSP 1 Score: 161.8 bits (408), Expect = 4.7e-39 Identity = 80/109 (73.39%), Postives = 85/109 (77.98%), Query Frame = 0
BLAST of Carg10225-RA vs. Swiss-Prot
Match: sp|B3H7G2|URM12_ARATH (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2 PE=3 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 1.3e-36 Identity = 75/108 (69.44%), Postives = 82/108 (75.93%), Query Frame = 0
BLAST of Carg10225-RA vs. Swiss-Prot
Match: sp|Q7GBC8|URM1_ORYSI (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=URM1 PE=3 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 1.9e-32 Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 0
BLAST of Carg10225-RA vs. Swiss-Prot
Match: sp|Q0D6M1|URM1_ORYSJ (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=URM1 PE=3 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 1.9e-32 Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 0
BLAST of Carg10225-RA vs. Swiss-Prot
Match: sp|B6SXH2|URM1_MAIZE (Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 3.0e-30 Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 0
BLAST of Carg10225-RA vs. TrEMBL
Match: tr|A0A0A0KCT7|A0A0A0KCT7_CUCSA (Ubiquitin-related modifier 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G075130 PE=3 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 8.0e-44 Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 0
BLAST of Carg10225-RA vs. TrEMBL
Match: tr|A0A1S3CCC7|A0A1S3CCC7_CUCME (Ubiquitin-related modifier 1 homolog OS=Cucumis melo OX=3656 GN=LOC103499050 PE=3 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 9.1e-40 Identity = 84/109 (77.06%), Postives = 90/109 (82.57%), Query Frame = 0
BLAST of Carg10225-RA vs. TrEMBL
Match: tr|A0A1Q3C8W7|A0A1Q3C8W7_CEPFO (Ubiquitin-related modifier 1 homolog OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_20153 PE=3 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 5.9e-39 Identity = 81/109 (74.31%), Postives = 91/109 (83.49%), Query Frame = 0
BLAST of Carg10225-RA vs. TrEMBL
Match: tr|A0A0S3SXY8|A0A0S3SXY8_PHAAN (Ubiquitin-related modifier 1 homolog OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G141900 PE=3 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38 Identity = 82/109 (75.23%), Postives = 89/109 (81.65%), Query Frame = 0
BLAST of Carg10225-RA vs. TrEMBL
Match: tr|B9RDI8|B9RDI8_RICCO (Ubiquitin-related modifier 1 homolog OS=Ricinus communis OX=3988 GN=RCOM_1613470 PE=3 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 2.2e-38 Identity = 81/109 (74.31%), Postives = 89/109 (81.65%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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