Carg25091-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGGGCGGTGTGGGTGGAGAAAGGCAGCATGAAGGCGTCGGAATTGGAATGCCTCCTCCAGGTCCAAGAGAAACGACAAGTCGTCCTGCTGCAGTTACCACACTCTTTACTCCCGTCGATAACTCTGCTGATACCTCAAACACGACCATGTCTCTGTCTCCAAGTAAGTTGGAGGAGGATCCTCACGCGCCTAAGGGCAAAACCCACCTTCACCCTCGTAATTCCGAGGTCAAAGTTCACGATCCCGCAAGCACAGGTAACTAATTTTACATTAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTAATCTGTCCGTTTTCATTTTGAACTAGGGAGCGAAGAAGCAGGGGAATCGCAGATTTTGGATTCATTTGCAAAAATGAAAGTAAACGACGAACAGAATCAAAGCAGAGATCAGGTCAGTTACGCTCAGAAGATCTCAGCTGTGGGTTCAGCCGTGAGTGGAAAAGCAGTGGCAGCGAAGGATTTTGTGGCATCGAAGATAGCTTTAACAGTGACAGAGAAGCTGAAGCCAGGGGAGGAGGACAGAGCCCTGTCGGAAGTGATTTCGGAAGCTTTGAATAGAAGGAAGCAGGAGGTGGTGAAAGTTGGAGAAAGTGCATTTAGGGAGCCGCCGAAAGGGAGTGCAACGGAGTCGGGGAGGAGTGTGGTGGGTATGGTGAAAGACACGGTGGGGTCGTGGCTGGGGAAAGCGGGTGACCAATCGGCGGGGCAAGGGAGGCCGGGGAAGGACCACGGTGGGACGGAGGCGGAGGTGCGGATACTGCAGGAATCGGCGAATTGA ATGAGGGGCGGTGTGGGTGGAGAAAGGCAGCATGAAGGCGTCGGAATTGGAATGCCTCCTCCAGGTCCAAGAGAAACGACAAGTCGTCCTGCTGCAGTTACCACACTCTTTACTCCCGTCGATAACTCTGCTGATACCTCAAACACGACCATGTCTCTGTCTCCAAGTAAGTTGGAGGAGGATCCTCACGCGCCTAAGGGCAAAACCCACCTTCACCCTCGTAATTCCGAGGTCAAAGTTCACGATCCCGCAAGCACAGGGAGCGAAGAAGCAGGGGAATCGCAGATTTTGGATTCATTTGCAAAAATGAAAGTAAACGACGAACAGAATCAAAGCAGAGATCAGGTCAGTTACGCTCAGAAGATCTCAGCTGTGGGTTCAGCCGTGAGTGGAAAAGCAGTGGCAGCGAAGGATTTTGTGGCATCGAAGATAGCTTTAACAGTGACAGAGAAGCTGAAGCCAGGGGAGGAGGACAGAGCCCTGTCGGAAGTGATTTCGGAAGCTTTGAATAGAAGGAAGCAGGAGGTGGTGAAAGTTGGAGAAAGTGCATTTAGGGAGCCGCCGAAAGGGAGTGCAACGGAGTCGGGGAGGAGTGTGGTGGGTATGGTGAAAGACACGGTGGGGTCGTGGCTGGGGAAAGCGGGTGACCAATCGGCGGGGCAAGGGAGGCCGGGGAAGGACCACGGTGGGACGGAGGCGGAGGTGCGGATACTGCAGGAATCGGCGAATTGA ATGAGGGGCGGTGTGGGTGGAGAAAGGCAGCATGAAGGCGTCGGAATTGGAATGCCTCCTCCAGGTCCAAGAGAAACGACAAGTCGTCCTGCTGCAGTTACCACACTCTTTACTCCCGTCGATAACTCTGCTGATACCTCAAACACGACCATGTCTCTGTCTCCAAGTAAGTTGGAGGAGGATCCTCACGCGCCTAAGGGCAAAACCCACCTTCACCCTCGTAATTCCGAGGTCAAAGTTCACGATCCCGCAAGCACAGGGAGCGAAGAAGCAGGGGAATCGCAGATTTTGGATTCATTTGCAAAAATGAAAGTAAACGACGAACAGAATCAAAGCAGAGATCAGGTCAGTTACGCTCAGAAGATCTCAGCTGTGGGTTCAGCCGTGAGTGGAAAAGCAGTGGCAGCGAAGGATTTTGTGGCATCGAAGATAGCTTTAACAGTGACAGAGAAGCTGAAGCCAGGGGAGGAGGACAGAGCCCTGTCGGAAGTGATTTCGGAAGCTTTGAATAGAAGGAAGCAGGAGGTGGTGAAAGTTGGAGAAAGTGCATTTAGGGAGCCGCCGAAAGGGAGTGCAACGGAGTCGGGGAGGAGTGTGGTGGGTATGGTGAAAGACACGGTGGGGTCGTGGCTGGGGAAAGCGGGTGACCAATCGGCGGGGCAAGGGAGGCCGGGGAAGGACCACGGTGGGACGGAGGCGGAGGTGCGGATACTGCAGGAATCGGCGAATTGA MRGGVGGERQHEGVGIGMPPPGPRETTSRPAAVTTLFTPVDNSADTSNTTMSLSPSKLEEDPHAPKGKTHLHPRNSEVKVHDPASTGSEEAGESQILDSFAKMKVNDEQNQSRDQVSYAQKISAVGSAVSGKAVAAKDFVASKIALTVTEKLKPGEEDRALSEVISEALNRRKQEVVKVGESAFREPPKGSATESGRSVVGMVKDTVGSWLGKAGDQSAGQGRPGKDHGGTEAEVRILQESAN
BLAST of Carg25091-RA vs. NCBI nr
Match: XP_022952678.1 (low-temperature-induced 78 kDa protein-like [Cucurbita moschata]) HSP 1 Score: 450.7 bits (1158), Expect = 3.2e-123 Identity = 241/243 (99.18%), Postives = 241/243 (99.18%), Query Frame = 0
BLAST of Carg25091-RA vs. NCBI nr
Match: XP_023554181.1 (low-temperature-induced 65 kDa protein-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 441.4 bits (1134), Expect = 2.0e-120 Identity = 236/243 (97.12%), Postives = 238/243 (97.94%), Query Frame = 0
BLAST of Carg25091-RA vs. NCBI nr
Match: XP_022971843.1 (low-temperature-induced 65 kDa protein-like [Cucurbita maxima]) HSP 1 Score: 436.0 bits (1120), Expect = 8.2e-119 Identity = 234/243 (96.30%), Postives = 235/243 (96.71%), Query Frame = 0
BLAST of Carg25091-RA vs. NCBI nr
Match: XP_008465872.2 (PREDICTED: low-temperature-induced 65 kDa protein [Cucumis melo]) HSP 1 Score: 243.8 bits (621), Expect = 6.0e-61 Identity = 181/348 (52.01%), Postives = 199/348 (57.18%), Query Frame = 0
BLAST of Carg25091-RA vs. NCBI nr
Match: XP_011652891.1 (PREDICTED: low-temperature-induced 65 kDa protein [Cucumis sativus]) HSP 1 Score: 233.8 bits (595), Expect = 6.2e-58 Identity = 176/347 (50.72%), Postives = 192/347 (55.33%), Query Frame = 0
BLAST of Carg25091-RA vs. TAIR10
Match: AT5G52300.1 (CAP160 protein) HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04 Identity = 35/99 (35.35%), Postives = 46/99 (46.46%), Query Frame = 0
BLAST of Carg25091-RA vs. TrEMBL
Match: tr|A0A1S3CPX7|A0A1S3CPX7_CUCME (low-temperature-induced 65 kDa protein OS=Cucumis melo OX=3656 GN=LOC103503460 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 4.0e-61 Identity = 181/348 (52.01%), Postives = 199/348 (57.18%), Query Frame = 0
BLAST of Carg25091-RA vs. TrEMBL
Match: tr|A0A0A0LIE7|A0A0A0LIE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G914030 PE=4 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 4.1e-58 Identity = 176/347 (50.72%), Postives = 192/347 (55.33%), Query Frame = 0
BLAST of Carg25091-RA vs. TrEMBL
Match: tr|A0A218X3M2|A0A218X3M2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr022945 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 2.7e-09 Identity = 52/127 (40.94%), Postives = 70/127 (55.12%), Query Frame = 0
BLAST of Carg25091-RA vs. TrEMBL
Match: tr|A0A2I0J3A2|A0A2I0J3A2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_028853 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 2.7e-09 Identity = 52/127 (40.94%), Postives = 70/127 (55.12%), Query Frame = 0
BLAST of Carg25091-RA vs. TrEMBL
Match: tr|A0A1S4CK52|A0A1S4CK52_TOBAC (low-temperature-induced 65 kDa protein-like OS=Nicotiana tabacum OX=4097 GN=LOC107819933 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 3.5e-09 Identity = 59/189 (31.22%), Postives = 86/189 (45.50%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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