Carg25443 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25443
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Small nuclear ribonucleoprotein family protein
Location	Cucurbita_argyrosperma_scaffold_256 : 18941 .. 19279 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

mRNA sequence

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

Coding sequence (CDS)

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

Protein sequence

MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV

Homology

[Close]

BLAST of Carg25443 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.3 bits (573), Expect = 1.0e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 223.4 bits (568), Expect = 3.9e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQVG NVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. NCBI nr
Match: XP_023001494.1 (uncharacterized protein LOC111495614 [Cucurbita maxima])

HSP 1 Score: 220.3 bits (560), Expect = 3.3e-54
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           M+QESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRML+GIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. NCBI nr
Match: XP_011649337.1 (PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_1G025880 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 6.1e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 4.4e-51
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSN ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. TAIR10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 152.5 bits (384), Expect = 1.5e-37
Identity = 74/112 (66.07%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQ +  S   V S  E +    D + ++RKLLFR+ML+GIKDGRFFLG+F+C+DKQGNI
Sbjct: 1   MEQAAERSSTIVASTSEGS--DFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Sbjct: 61  ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

[Close]

BLAST of Carg25443 vs. Swiss-Prot
Match: sp|Q55A45|RSMB_DICDI (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.8e-06
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 23  LDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQ- 82
           + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ 
Sbjct: 4   MPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEK 63

Query: 83  RCLGLILIPNSCRVSCHVDSTIDEQLAL 110
           R LG+ILI     VS  V++   E+  L
Sbjct: 64  RTLGMILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of Carg25443 vs. Swiss-Prot
Match: sp|A4IGZ4|LSMD1_XENTR (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 29/73 (39.73%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI 87
           K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL 
Sbjct: 32  KLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFP-VREPRVLGLA 91

Query: 88  LIPNSCRVSCHVD 101
           ++P    VS  V+
Sbjct: 92  MVPGHHIVSIQVE 103

[Close]

BLAST of Carg25443 vs. Swiss-Prot
Match: sp|Q17QN3|RSMN_BOVIN (Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 26  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 85
           VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHVD 101
           E+R LGL+L+     VS  V+
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

[Close]

BLAST of Carg25443 vs. Swiss-Prot
Match: sp|P63162|RSMN_HUMAN (Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 26  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 85
           VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHVD 101
           E+R LGL+L+     VS  V+
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

[Close]

BLAST of Carg25443 vs. Swiss-Prot
Match: sp|Q60HD3|RSMN_MACFA (Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9541 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 26  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 85
           VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHVD 101
           E+R LGL+L+     VS  V+
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

[Close]

BLAST of Carg25443 vs. TrEMBL
Match: tr|A0A0A0LSZ5|A0A0A0LSZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.1e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. TrEMBL
Match: tr|A0A1S3BAH4|A0A1S3BAH4_CUCME (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.9e-51
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSN ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. TrEMBL
Match: tr|A0A061GCV7|A0A061GCV7_THECC (Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_029454 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.3e-40
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQE G S++Q+GS+ + N  S D V +VRKLLFRRML+GIKDGRFFLG+F+C+DKQGNI
Sbjct: 29  MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCIDKQGNI 88

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD++EYRSTR SSPSPMEQRCLGLILIP SCR SCHVD +I+EQL+LL V
Sbjct: 89  ILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLLKV 140

[Close]

BLAST of Carg25443 vs. TrEMBL
Match: tr|A0A0D2RE93|A0A0D2RE93_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G045800 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.9e-40
Identity = 81/112 (72.32%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQE G S++Q+G++  SN  S D V +VRKLLFRRML+GIKDGRFFLG+F+C+DKQGNI
Sbjct: 1   MEQEVGESLIQLGNSDGSNSSSSDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCLDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD +EYRSTRRSSPSPMEQRCLGL+LIP+SC+ SCHVD +++EQL+LL V
Sbjct: 61  ILQDTIEYRSTRRSSPSPMEQRCLGLVLIPSSCQNSCHVDCSVEEQLSLLKV 112

[Close]

BLAST of Carg25443 vs. TrEMBL
Match: tr|A0A061GKU0|A0A061GKU0_THECC (Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_029454 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.2e-40
Identity = 82/110 (74.55%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQE G S++Q+GS+ + N  S D V +VRKLLFRRML+GIKDGRFFLG+F+C+DKQGNI
Sbjct: 1   MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL 111
           ILQD++EYRSTR SSPSPMEQRCLGLILIP SCR SCHVD +I+EQL+LL
Sbjct: 61  ILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLL 110

The following BLAST results are available for this feature:

BLAST of Carg25443 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520042.1	1.0e-55	100.00	uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]	[more]
XP_022927243.1	3.9e-55	99.11	uncharacterized protein LOC111434149 [Cucurbita moschata]	[more]
XP_023001494.1	3.3e-54	97.32	uncharacterized protein LOC111495614 [Cucurbita maxima]	[more]
XP_011649337.1	6.1e-53	94.64	PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hy...	[more]
XP_008444477.1	4.4e-51	92.86	PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]	[more]

BLAST of Carg25443 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18372.1	1.5e-37	66.07	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Carg25443 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q55A45\|RSMB_DICDI	3.8e-06	32.95	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
sp\|A4IGZ4\|LSMD1_XENTR	2.5e-05	39.73	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
sp\|Q17QN3\|RSMN_BOVIN	3.3e-05	38.27	Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SN...	[more]
sp\|P63162\|RSMN_HUMAN	3.3e-05	38.27	Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=...	[more]
sp\|Q60HD3\|RSMN_MACFA	3.3e-05	38.27	Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9...	[more]

BLAST of Carg25443 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSZ5\|A0A0A0LSZ5_CUCSA	4.1e-53	94.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1	[more]
tr\|A0A1S3BAH4\|A0A1S3BAH4_CUCME	2.9e-51	92.86	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]
tr\|A0A061GCV7\|A0A061GCV7_THECC	2.3e-40	74.11	Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao OX=3...	[more]
tr\|A0A0D2RE93\|A0A0D2RE93_GOSRA	3.9e-40	72.32	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G045800 PE=4 ...	[more]
tr\|A0A061GKU0\|A0A061GKU0_THECC	5.2e-40	74.55	Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao OX=3...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0031417	NatC complex

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR034110	LSMD1
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0031417	NatC complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25443-RA	Carg25443-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 30..89 e-value: 2.7E-7 score: 30.1
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 22..106 e-value: 1.8E-17 score: 64.9
None	No IPR available	PANTHER	PTHR10701:SF9	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN	coord: 19..111
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 19..111
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 28..100 e-value: 1.20834E-24 score: 89.1533
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 26..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25443	Cla019570	Watermelon (97103) v1	carwmB0196
Carg25443	MELO3C002751	Melon (DHL92) v3.5.1	carmeB0212
Carg25443	ClCG03G006700	Watermelon (Charleston Gray)	carwcgB0202
Carg25443	CmaCh13G005240	Cucurbita maxima (Rimu)	carcmaB0285
Carg25443	CmoCh13G005530	Cucurbita moschata (Rifu)	carcmoB0290
Carg25443	Lsi02G009030	Bottle gourd (USVL1VR-Ls)	carlsiB184
Carg25443	Cp4.1LG20g05410	Cucurbita pepo (Zucchini)	carcpeB0294
Carg25443	Cla97C03G057970	Watermelon (97103) v2	carwmbB0210
Carg25443	Bhi08G001673	Wax gourd	carwgoB0257

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25443	Melon (DHL92) v3.6.1	carmedB0217