Carg09359-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09359-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CCR4-NOT transcription complex subunit 7
Location	Cucurbita_argyrosperma_scaffold_018 : 860000 .. 866809 (-)
Sequence length	2004

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATTGGCTTTTCTTTACCGTTCTTACTCTGGCGCTGGTTTTCCGACGCCCCATCTGTTTCTTCTCAGATCCCGAGCCCTGTTCGTCGTCTATTTTTTGTTCTCTCACTTAGGGTTTTGTCGTTTTGTCGCTCTTATCGAGTTCACCTTGGAGGGATGTCGATTTTACCGAAAGGCGATTCCATTCAAATCCGTGAGGTTTGGAACGATAATTTGGAGGAGGAGTTTGCGCTAATCCGTGAGATTGTTGATAAATTTAACTACATAGCCATGGATACTGAGTTTCCTGGAGTGGTGCTTCGCCCGTTGGGTGCCTTCAAGAATATCAATGATTACAACTACCAGACTCTTAAGGATAATGTTGACATGTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGACGAGAATGGAAATCTCCCGACTTGTGGAACCGATAGCTTTTGTATTTGGCAGTTCAATTTCCGCGAGTTCAATATTGTTAGTGATATTTTTGCTAGTGATTCAATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGCAGATGTGAACTGGGTTACCTTCCACAGTGGGTATGATTTCGGTTACTTGCTGAAATTGCTCACTTGCCGAGGCTTACCAGAAAAGCAGGACGGATTCTTTGACCTGATCAATGTCTATTTCCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTCTGCAACAGTCTTCATGGTGGGCTGAACAAGCTTGCGGAGTTATTAGAAGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTCTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGATCTATACAGAAATACGCAGGTGTTTTGTATGGTCTCGGTGTTGAAAATGGACAGCGTACTAATTGAAATTGAAGAGAATTACCAAGTATTTGTAGAAGTGTGAGACTTTTAGTTACTTCTGTACAATTTGGCTAAAGCATTGATGATGATTGTAACTGTTTTCCGCTTTCCTTCCCTGTAATAGAAACCTCCGACTGTTTTTCGCAGCTTGTGGTTTCTTGTAAATTATGGCAGTTAGTGTTTCAATAAGAATCTTAATGACGTTTCTTTGAATGGGTTTTCACTTGTTTTGTGAGCTTACGTTCTTACATAGTCCTTTGGGTTATTAATTATGCAAGGCTCCAAAGCTACTTGGATTGATACACATTGTTGCCAATTGATCATATTTCTTTAACAACCAACTCGGTGATGGGAATTTTCAAGTCTTTCAACTGTTTTCTCCTGCTCTGATGATGTGACTGATTAGCTTTGTCTCCGGTGATGCCATTAGGATAGATATTGATTAGCTTTGTCTCCATGGATTAGATTGGAATCTGCTAGGAACTAACCGCCTGTCTCGCCCGTTAAGTTAGATCAGTTTTCTGTCATATTGGACACTTTTTTGGTTTCAGTAGTTGTTTGTATCTGATGATCCTTCAAGGCCCTCTCTATTCTTTGATTGTTATCTGTTTGATTGTCTTGATGTTAATGGCTTATTTTCTTCCACTTCCTATTGAACATTTGCAGACTCTATTAATACGTATGTTTTGAGGTATCTTTGTAGCTAATGTTTCATTTGCTGGTATGATTATAGAGTTAAACTGTTCTTTATATGGTACTGTCTTAGCACACGATATAGCATTGGTTACATTATCTTTTCTGATTTTAATCATGCACGAAACTCAGACGTATCTCTGGCTTGGAAATTCAGAATCGAACGAACGAGCCATGGAGATAGATCGATTCCTCTGCACATCAGGTGAGCATTGTATATAAGCTTTAGTTTGAAATTCTCACTTTGTAGCCATGTCTGATGAGATTCAATGCATTTCCCAACAATTTTAAGAGAGATGCATCCTATTACGGTTGCATATTAGTTTCAGCTGTCAAATCTCAAATCATATTTCTCAGCTTGACTTCTAACCAATTGCTCATTTGATCTGGTGGGGCAGTGGAATCATGATAGTTTTAGTGAAATTTCTGCCACAGTGATCTTAAAACTCTGAAATCTGAGAGAATTTACACATCTAAAACTGTTCATATTTGTACTGTCTTGTTTTGGTATTGCAGACATGGCCTGGAGCCTAAGCAAGTTGGAAACCAAGGAAACTGAACCAACCTCGGGTATACACAAAACCTTTTGACCATTTTTTAATCTCATGTTACCTCTACAATTCACTGCACTCTGCTGTTCATAAGGATTTGGATTTGATATGAAGCACATCTTCTTTGTTATTATTGTTGGATCCAGATTTTGTGGTGATATTAGTATATGACATTGGGTGGCTTCAGATTCTGTAGAGATAATTGTACCTAATCTTTTTGTTTGAGAGAAAGAGAGGCACAGAAATGGGTTGCACATGCATATGCCTACTAATCATATGGGCACAGAATATCTTTAAGAAACCCTTTGAGATTAGCCTACCTCTTACTTTATTCCCATCCTAGTCGAATTCAGCAAATTATGTTCACTTATGTCTAAGAATCTTCACTTCGATCGACATCCCGTGCAGCTCAATTATACGTTCCCAAATCCTTTTAGATTTTTTGTAACAGCCCAAACCCACCACCGTTAACATATATTGTCCTATTTGGATTTTAAAACGCGTTTGCTAGGAGAGGTTTTCACATCCTTGTAAGGAATGCTTCATTTACCTCTCTAATCGATGTGAGATCTCACAATTTACTCCTGTTGGGGGCCTAGCGTCCTCGCTAGCACATCTCACAATCTACTCCTATTGGGAGCCTAGTCTGGTGTCTGGCGTCTAGGGCCTCTGTCTGGTTTCCTTTAAGCTCATTGCATATTGTCCTCTTTGGGCTTTCCTTTAAGGTTTGCCTCTACTAGGGAGAGATTTCCATACTCTTGTAAGGAACGCTTCGATCCCTTCTCCAACCGAACCGATGTGAGATTTTTCTCACTTTTCTTTTTCAAAAGAGGATAATATGATCCCTTCTCCAACCGATGTGAGATTTTTCTCACTTTTCTTTTTCAAAAGAGGATAATATGGCGGAGATTTAAATCACTTGAGTACTAGATTTGGTTGGATTTTAATTGATAGGATTCAAGTTTAGACTCTTATTATTATTATTTTTTTAAAAATTAAAATTAAAAATATTACTGTTAGTTTTTATATTTTGTTATCCACCTTCTGCTTTTAAAAATTTAACCCTAGATTTAAAAAGTTTATTTATTTATTTTTTAAATAGTTCTAAAAATTTTATTTTTATTTTTAAAATTTAATTAAGAATTTAAATGACTAAATTTAAATATATGGTTAGTTATTTAATTTAAAGGCTAATCATTGATTAGAAGTGATTATGTCTAAATCATGGGCCCCAAATTGAGTGATTAAAGACGTGGGACGCATATAGGCTCCATTTCAGGATTTCTTTTTTAATTTCTTTCTTTTTTAAAAAAAAAAATTGATTAAAGTTTTTCAGAAAACAATAATATGGTATTTTCCAAACGGGTTTTGGTGGACTTGGGCCTATCATGAAGCCCACGGTTAAATTTATGAAAGCCCAATTGTATTAATGGGCTTGTTTAGCAGCTAAATTTTAATGTAAAAATACGCACCTATTTATTGGGTTTGAGAAACTTATTAAATAATAACAATAATACGCAACAAAAACAATCAAATTTCTAGGAATTATTTCTTACAAACTTCAAGATTCGTCATCTTGGACTAAGCTCACAAAATCACTACACTTCTCTGCTTCAAGATCGCTCTGTTTCAGCCATTAATCTTTGCTTTTCAAGGTCAGATTATCCGATTTCGCCACTCTGAGGAGTTTTCCCCTTTTGCTCAATCGCTTCTTTATCTACGGTTCGATCCTCACTCTGTTTTTCTGGTTCTTGCTTCACTCTGGGGTTTTTGTCTCCGAGATCTTCAAGATCTTGGAAGATTTCATAAGTGCCTTCTTCTTTAATTGAACGGCCGTACATCAGGTTTTTAGGGCTGAAGGTTTTTTTCCCCGGATTTTTGGCGGTAGGGTTTTTCCGTTTTTGCCATTTTTGTTGGGTCAGTTAGAGAATCAAGGTATGTCGACGTTTCCGAAAGCTGAGTCGATTTATATCCGTGAGGTGTGGAACCATAATTTGGAGGAAGAGTTCGCTTTAATACGCGAAGTCGTCGACCAATTCAACTACATAGCGATGGATACCGAATTCCCCGGCGTGGTTCTGCGCCCTGTGGGTACTTTTAAGAATATCAACGAGTTTAACTACCGAACCCTCAAAGACAATGTCGACATTTTGAATTTGATTCAGTTGGGTCTTACCTTTTCCGAAGAGAATGGGAATCTTCCAACATGTGGTACCGATAAGTATTGCATTTGGCAATTCAATTTCCGCGAGTTCAACATTACTGAAGATATTTATGCAACTGATTCGATTCAGCTTTTGCGCGACTCTGGTATTGATTTCAAGAAGAACAAAGAAGAAGGTATTGATGTCAGACGCTTCAGTGAGCTTCTCATGTCATCCGGGATTGTCTTAAACGATAGTGTTTACTGGGTGACGTTCCACAGCGGGTATGATTTTGGGTACTTGCTGAAATTGTTGACTTGCCAAATCTTACCAGACACCCAGGAGGAGTTTTTTTATTTGATCCGTACGTATTTCCCAATGGTTTATGATGTCAAGCATTTGTTGAAGTTTTGCAACAGTATCTATGGTGGGCTCAGCAAGGTTGCAGAAACATTAGAAATTGAGAGGGTTGGAGTTTGCCATCAAGCAGGATCAGATAGCCTCCTTACTGCCTGTACTTTCAGGAAGTTAAGGGATACATTTTTCAGTGGATCTACACAGAAATATGCCGGTGTTTTATATGGTCTCGGTGTCGAAAATGAACCGACTACTGATTGAAGACACTTACCAAGTATTTGTAGCATTGATGGGTGTCTCTGTATGATGTTGTAAATTAGTGCAGGTAGCAGTTAGTGTTTCAATAGAACCTTAATGGCACTCTTTAAGTTAGTGATCTTGTTTGGTTAGATGCTATGCTATATGTGCCTTACAATTCATTGAAACTGTTATACGTGAAAGATAGATGGACAAATACATAGTAGTGGCAATAGAGAACATATTTCCTCAAAAACTGTCAGCTCTGTGATTTGATTTTCTTTGCCTGGCCTGTTGATGTGATCCTTTATCCTCGTATGTGTCAATGCAGTTCTATCTTTACCGAACACTGACAATTGTCGATAGAACCATTAGCCTTTCTCACTTTTATGAACAGAGTTCTTGTTTAAACCTTATTACTGAGCAATTCTGGTAGAGAGCTTATTTGTTTCCTTCTCTAACTGCATGTATCTGATTCTTCCAAGTTTTTTGGAGAAATAGATCCCATGTGACATTCCAAGATACTGTCCATACATGTATTTGAACGGAGTTTAGAGGTAACCAGTTCTTTATCTTTTTTCTTTGTATTTGTGCACTAAACTGAGATATCCTTGGCTTATACAATGAGTTTCAAGTCTTTTCCTTGTTTTTTTTTCTTCAGGTATCTTAAGTTTTTGTTTTTCTCTTATTTGGGCGATGCTTGATTCGTACTTATTATGAACTCGATGCGGTTGGCTCAAGTTATCAATCCAAAACTTGCTTATCCCATCCTGTTCTCGCCTGGTGAGCATTCTTTAAGCTTTATCTTGAAGTTCACTTGGTATCAATATTTGATAAGATTCAATGCCTTCGCTACAACTCGATGTCCATTGTTATATGGAAGTGAAACTATGAAAGTAAAAATTATTTCAAATTAAGAAGTTGTGGTCTATCTAACCCTTTTCAGTCCTTGAATGGCTTTCAGTAAACAGCCTGAGACCTAAGCAAGTTGAAACGAAGAGTGGGACTGTGAAATGGAGGAATCATTTTGAAAGCTCGATCGTTTTCATGTGAGGGGAATCGACATATTTCAAGTGTCAAGAAAGCCAAATACCTGGCGTTTCCCGTCACCGTCTTGAATTGAAGTAGCTTCGGATTCTTCTGGTCAGTATTATGAGTTACCCTTTCCTAGATTTATTGACAAGAGTTGAGAAATTCTTTCCATACCACAACTTGAGATGAGAGTCAGGGAGGCAGTGGGGGTGTAGTTTAGAGAGTAGGAGCCATAGTTCCAGTAGAATAGGAATTAGAACCATGTAGGCTGAGGGACAATTGTGGGTTGCTGCATTTTGAGCTGAGGGACTTGACTGGTGTGACACTGTGAGTCTACTTCGAGCCCGAACCTTATGTTGAATGTTTGACAGACTCCTTCTCTATAATGCACAGGCACCTCTGTAGGTAAGCGAGTCGATTCTTGTAATGGTGGCGAGGCACGAGCAAGCTGCTACTCGGGGAATTACCAGGCAAATCTTCAAACACATGTTAAGGAAACATGTAAATAAAAGTACCAAACTCTCTACCCATGTATGCTTTTCACCTTGCGAAACACATTCTTAGTTATAGCGTTCAGATTTAGCTGATAATGAATGAACGAAACTGTTGTTCTTAACTTTTGCCATCTGTTAGAATTCTCCTGTTAAGTCCTCACAATATCCCAACTTTTGTTTAAAAAAAAAGAGATCGAGCAGAGATGTCCATTTTTATTTGCGGAGACTTGCTCGGAATGGAGAAGAAATTCTTAGTTTAGACGGGAAATGGGAGGGGAAGAGTGAGAGCATTTTTTCCGGTTAGTTCGGAGACAGGATTATATTCTC

mRNA sequence

TCTATTGGCTTTTCTTTACCGTTCTTACTCTGGCGCTGGTTTTCCGACGCCCCATCTGTTTCTTCTCAGATCCCGAGCCCTGTTCGTCGTCTATTTTTTGTTCTCTCACTTAGGGTTTTGTCGTTTTGTCGCTCTTATCGAGTTCACCTTGGAGGGATGTCGATTTTACCGAAAGGCGATTCCATTCAAATCCGTGAGGTTTGGAACGATAATTTGGAGGAGGAGTTTGCGCTAATCCGTGAGATTGTTGATAAATTTAACTACATAGCCATGGATACTGAGTTTCCTGGAGTGGTGCTTCGCCCGTTGGGTGCCTTCAAGAATATCAATGATTACAACTACCAGACTCTTAAGGATAATGTTGACATGTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGACGAGAATGGAAATCTCCCGACTTGTGGAACCGATAGCTTTTGTATTTGGCAGTTCAATTTCCGCGAGTTCAATATTGTTAGTGATATTTTTGCTAGTGATTCAATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGCAGATGTGAACTGGGTTACCTTCCACAGTGGGTATGATTTCGAGTTAAACTGTTCTTTATATGGTACTGTCTTAGCACACGATATAGCATTGGTTACATTATCTTTTCTGATTTTAATCATGCACGAAACTCAGACGTATCTCTGGCTTGGAAATTCAGAATCGAACGAACGAGCCATGGAGATAGATCGATTCCTCTGCACATCAGACATGGCCTGGAGCCTAAGCAAGTTGGAAACCAAGGAAACTGAACCAACCTCGGAGAATCAAGGTATGTCGACGTTTCCGAAAGCTGAGTCGATTTATATCCGTGAGGTGTGGAACCATAATTTGGAGGAAGAGTTCGCTTTAATACGCGAAGTCGTCGACCAATTCAACTACATAGCGATGGATACCGAATTCCCCGGCGTGGTTCTGCGCCCTGTGGGTACTTTTAAGAATATCAACGAGTTTAACTACCGAACCCTCAAAGACAATGTCGACATTTTGAATTTGATTCAGTTGGGTCTTACCTTTTCCGAAGAGAATGGGAATCTTCCAACATGTGGTACCGATAAGTATTGCATTTGGCAATTCAATTTCCGCGAGTTCAACATTACTGAAGATATTTATGCAACTGATTCGATTCAGCTTTTGCGCGACTCTGGTATTGATTTCAAGAAGAACAAAGAAGAAGGTATTGATGTCAGACGCTTCAGTGAGCTTCTCATGTCATCCGGGATTGTCTTAAACGATAGTGTTTACTGGGTGACGTTCCACAGCGGGTATGATTTTGGGTACTTGCTGAAATTGTTGACTTGCCAAATCTTACCAGACACCCAGGAGGACAAGGTTGCAGAAACATTAGAAATTGAGAGGGTTGGAGTTTGCCATCAAGCAGGATCAGATAGCCTCCTTACTGCCTGTACTTTCAGGAAGTTAAGGGATACATTTTTCAGTGGATCTACACAGAAATATGCCGGCACCTCTGTAGGTAAGCGAGTCGATTCTTGTAATGGTGGCGAGGCACGAGCAAGCTGCTACTCGGGGAATTACCAGGCAAATCTTCAAACACATGTTAAGGAAACATGTAAATAAAAGTACCAAACTCTCTACCCATGTATGCTTTTCACCTTGCGAAACACATTCTTAGTTATAGCGTTCAGATTTAGCTGATAATGAATGAACGAAACTGTTGTTCTTAACTTTTGCCATCTGTTAGAATTCTCCTGTTAAGTCCTCACAATATCCCAACTTTTGTTTAAAAAAAAAGAGATCGAGCAGAGATGTCCATTTTTATTTGCGGAGACTTGCTCGGAATGGAGAAGAAATTCTTAGTTTAGACGGGAAATGGGAGGGGAAGAGTGAGAGCATTTTTTCCGGTTAGTTCGGAGACAGGATTATATTCTC

Coding sequence (CDS)

TCTATTGGCTTTTCTTTACCGTTCTTACTCTGGCGCTGGTTTTCCGACGCCCCATCTGTTTCTTCTCAGATCCCGAGCCCTGTTCGTCGTCTATTTTTTGTTCTCTCACTTAGGGTTTTGTCGTTTTGTCGCTCTTATCGAGTTCACCTTGGAGGGATGTCGATTTTACCGAAAGGCGATTCCATTCAAATCCGTGAGGTTTGGAACGATAATTTGGAGGAGGAGTTTGCGCTAATCCGTGAGATTGTTGATAAATTTAACTACATAGCCATGGATACTGAGTTTCCTGGAGTGGTGCTTCGCCCGTTGGGTGCCTTCAAGAATATCAATGATTACAACTACCAGACTCTTAAGGATAATGTTGACATGTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGACGAGAATGGAAATCTCCCGACTTGTGGAACCGATAGCTTTTGTATTTGGCAGTTCAATTTCCGCGAGTTCAATATTGTTAGTGATATTTTTGCTAGTGATTCAATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGCAGATGTGAACTGGGTTACCTTCCACAGTGGGTATGATTTCGAGTTAAACTGTTCTTTATATGGTACTGTCTTAGCACACGATATAGCATTGGTTACATTATCTTTTCTGATTTTAATCATGCACGAAACTCAGACGTATCTCTGGCTTGGAAATTCAGAATCGAACGAACGAGCCATGGAGATAGATCGATTCCTCTGCACATCAGACATGGCCTGGAGCCTAAGCAAGTTGGAAACCAAGGAAACTGAACCAACCTCGGAGAATCAAGGTATGTCGACGTTTCCGAAAGCTGAGTCGATTTATATCCGTGAGGTGTGGAACCATAATTTGGAGGAAGAGTTCGCTTTAATACGCGAAGTCGTCGACCAATTCAACTACATAGCGATGGATACCGAATTCCCCGGCGTGGTTCTGCGCCCTGTGGGTACTTTTAAGAATATCAACGAGTTTAACTACCGAACCCTCAAAGACAATGTCGACATTTTGAATTTGATTCAGTTGGGTCTTACCTTTTCCGAAGAGAATGGGAATCTTCCAACATGTGGTACCGATAAGTATTGCATTTGGCAATTCAATTTCCGCGAGTTCAACATTACTGAAGATATTTATGCAACTGATTCGATTCAGCTTTTGCGCGACTCTGGTATTGATTTCAAGAAGAACAAAGAAGAAGGTATTGATGTCAGACGCTTCAGTGAGCTTCTCATGTCATCCGGGATTGTCTTAAACGATAGTGTTTACTGGGTGACGTTCCACAGCGGGTATGATTTTGGGTACTTGCTGAAATTGTTGACTTGCCAAATCTTACCAGACACCCAGGAGGACAAGGTTGCAGAAACATTAGAAATTGAGAGGGTTGGAGTTTGCCATCAAGCAGGATCAGATAGCCTCCTTACTGCCTGTACTTTCAGGAAGTTAAGGGATACATTTTTCAGTGGATCTACACAGAAATATGCCGGCACCTCTGTAGGTAAGCGAGTCGATTCTTGTAATGGTGGCGAGGCACGAGCAAGCTGCTACTCGGGGAATTACCAGGCAAATCTTCAAACACATGTTAAGGAAACATGTAAATAA

Protein sequence

SIGFSLPFLLWRWFSDAPSVSSQIPSPVRRLFFVLSLRVLSFCRSYRVHLGGMSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFELNCSLYGTVLAHDIALVTLSFLILIMHETQTYLWLGNSESNERAMEIDRFLCTSDMAWSLSKLETKETEPTSENQGMSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEFNYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQLLRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILPDTQEDKVAETLEIERVGVCHQAGSDSLLTACTFRKLRDTFFSGSTQKYAGTSVGKRVDSCNGGEARASCYSGNYQANLQTHVKETCK

Homology

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BLAST of Carg09359-RA vs. NCBI nr
Match: PPD90595.1 (hypothetical protein GOBAR_DD12480 [Gossypium barbadense])

HSP 1 Score: 543.1 bits (1398), Expect = 1.1e-150
Identity = 280/513 (54.58%), Postives = 330/513 (64.33%), Query Frame = 0


Query: 53  MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 112
           MS+LPK DSI IREVW+DN+EEEFALIREIVD + Y+AMDTEFPG+VLRP+G FK+  DY
Sbjct: 1   MSLLPKSDSIHIREVWDDNVEEEFALIREIVDDYPYVAMDTEFPGIVLRPVGYFKSSYDY 60

Query: 113 NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 172
           +YQTLKDNVDMLKL+QLGLTFSDE GNLPTCGTD +CIWQFNFREFN+  D+FA+DSIEL
Sbjct: 61  HYQTLKDNVDMLKLVQLGLTFSDEKGNLPTCGTDKYCIWQFNFREFNVNKDVFANDSIEL 120

Query: 173 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFELNCSLYGTVLAH 232
           LRQ GIDF+KNNE+GID  RF                                       
Sbjct: 121 LRQSGIDFKKNNEKGIDAMRF--------------------------------------- 180

Query: 233 DIALVTLSFLILIMHETQTYLWLGNSESNERAMEIDRFLCTSDMAWSLSKLETKETEPTS 292
              +VT+                                                     
Sbjct: 181 ---VVTI----------------------------------------------------- 240

Query: 293 ENQGMSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKN 352
                              W+ N+EEEFALIRE+VD + Y+AMDTEFPG+VLRPVG FK+
Sbjct: 241 ------------------XWDDNVEEEFALIREIVDDYPYVAMDTEFPGIVLRPVGYFKS 300

Query: 353 INEFNYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATD 412
             +++Y+TLKDNVD+L L+QLGLTFS+E GNLPTCGTDKYCIWQFNFREFN+ +D++A D
Sbjct: 301 SYDYHYQTLKDNVDMLKLVQLGLTFSDEKGNLPTCGTDKYCIWQFNFREFNVNKDVFAND 360

Query: 413 SIQLLRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTC 472
           SI+LLR SGIDFKKN E+GID  RF ELLMSSGIVLND+V+WVTFHSGYDFGYLLKLLTC
Sbjct: 361 SIELLRQSGIDFKKNNEKGIDAMRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTC 400

Query: 473 QILPDTQE------------------------------DKVAETLEIERVGVCHQAGSDS 532
           Q LPDTQ                               +K+AE LE+ERVG+CHQAGSDS
Sbjct: 421 QNLPDTQVGFFSLINIYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDS 400

Query: 533 LLTACTFRKLRDTFFSGSTQKYAGTSVGKRVDS 536
           LLTACTFRKL++ FFSGS +KY+G   G  V++
Sbjct: 481 LLTACTFRKLKENFFSGSLEKYSGVLYGLGVEN 400

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BLAST of Carg09359-RA vs. NCBI nr
Match: XP_022962455.1 (probable CCR4-associated factor 1 homolog 7 [Cucurbita moschata] >XP_022962456.1 probable CCR4-associated factor 1 homolog 7 [Cucurbita moschata])

HSP 1 Score: 456.8 bits (1174), Expect = 1.0e-124
Identity = 230/269 (85.50%), Postives = 233/269 (86.62%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MSTFPKAESIYIREVWNHNLE EFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF
Sbjct: 1   MSTFPKAESIYIREVWNHNLEAEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 416
           NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL
Sbjct: 61  NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 120

Query: 417 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 476
           LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP
Sbjct: 121 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 180

Query: 477 DTQED------------------------------KVAETLEIERVGVCHQAGSDSLLTA 536
           DTQE+                              KVAETLEIERVGVCHQAGSDSLLTA
Sbjct: 181 DTQEEFFYLIRTYFPMVYDVKHLLKFCNSIYGGLSKVAETLEIERVGVCHQAGSDSLLTA 240

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BLAST of Carg09359-RA vs. NCBI nr
Match: XP_022996959.1 (probable CCR4-associated factor 1 homolog 7 [Cucurbita maxima] >XP_022996960.1 probable CCR4-associated factor 1 homolog 7 [Cucurbita maxima])

HSP 1 Score: 451.8 bits (1161), Expect = 3.3e-123
Identity = 227/269 (84.39%), Postives = 231/269 (85.87%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MS FPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVG FKNINE+
Sbjct: 1   MSMFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGNFKNINEY 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 416
           NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL
Sbjct: 61  NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 120

Query: 417 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 476
           LRDSGIDFKKNKEEGIDV RFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP
Sbjct: 121 LRDSGIDFKKNKEEGIDVNRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 180

Query: 477 DTQED------------------------------KVAETLEIERVGVCHQAGSDSLLTA 536
           DTQE+                              KVAETLEIERVGVCHQAGSDSLLTA
Sbjct: 181 DTQEEFFDLIHTYFPMVYDVKHLLKFCNSVYGGLSKVAETLEIERVGVCHQAGSDSLLTA 240

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BLAST of Carg09359-RA vs. NCBI nr
Match: XP_023545659.1 (probable CCR4-associated factor 1 homolog 7 [Cucurbita pepo subsp. pepo] >XP_023545660.1 probable CCR4-associated factor 1 homolog 7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-122
Identity = 226/269 (84.01%), Postives = 231/269 (85.87%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVG+FKNINEF
Sbjct: 1   MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGSFKNINEF 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 416
           NYRTLKDNVDILNLIQLGLTFSEENGNLP CGTDKYCIWQFNFREFNI EDIYATDSIQL
Sbjct: 61  NYRTLKDNVDILNLIQLGLTFSEENGNLPKCGTDKYCIWQFNFREFNIAEDIYATDSIQL 120

Query: 417 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 476
           LRDSGIDFKKNKEEGIDV RFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP
Sbjct: 121 LRDSGIDFKKNKEEGIDVNRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 180

Query: 477 DTQED------------------------------KVAETLEIERVGVCHQAGSDSLLTA 536
           +TQE+                              KVAETLEIERVGVCHQAGSDSLLTA
Sbjct: 181 ETQEEFFDLIHTYFPMVYDVKHLLKFCNSIYGGLSKVAETLEIERVGVCHQAGSDSLLTA 240

[Close]

BLAST of Carg09359-RA vs. NCBI nr
Match: XP_022132176.1 (probable CCR4-associated factor 1 homolog 7 [Momordica charantia])

HSP 1 Score: 405.6 bits (1041), Expect = 2.8e-109
Identity = 198/269 (73.61%), Postives = 221/269 (82.16%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MS  PK ESI+IREVW+HNLEEEFAL+RE+VDQFNYIAMDTEFPGVVLRPVG FKNINE+
Sbjct: 1   MSILPKGESIHIREVWDHNLEEEFALLREIVDQFNYIAMDTEFPGVVLRPVGAFKNINEY 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 416
           NY+TLKDNVD+L LIQLGLTFS+ENGNLPTCGTDK+CIWQFNFREFNI+EDI+A+DSI+L
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIEL 120

Query: 417 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 476
           LR  GIDFKKN EEGIDV RF+ELLMSSGIVLND+V WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LRQCGIDFKKNNEEGIDVNRFAELLMSSGIVLNDTVNWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 477 DTQE------------------------------DKVAETLEIERVGVCHQAGSDSLLTA 536
           DTQ                               +K+AE LE+ER+GVCHQAGSDSLLTA
Sbjct: 181 DTQAGFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

[Close]

BLAST of Carg09359-RA vs. TAIR10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 348.6 bits (893), Expect = 7.2e-96
Identity = 174/270 (64.44%), Postives = 204/270 (75.56%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MS F K +SI IREVWN NLE E ALIREVVD F ++AMDTEFPG+V RPVGTFK   E+
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTD-KYCIWQFNFREFNITEDIYATDSIQ 416
           +Y TLK NV+IL +IQLGLTFS+E GNLPTCGTD KYCIWQFNFREF++  DIYATDSI+
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 417 LLRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQIL 476
           LLR SGIDF KN E GID +RF+ELLMSSGIVLN++V+WVTFHSGYDFGYLLKLLTCQ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 477 PDTQE------------------------------DKVAETLEIERVGVCHQAGSDSLLT 536
           P+TQ                               +K+AE L++ERVG+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

[Close]

BLAST of Carg09359-RA vs. TAIR10
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 342.4 bits (877), Expect = 5.2e-94
Identity = 168/263 (63.88%), Postives = 201/263 (76.43%), Query Frame = 0


Query: 302 KAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEFNYRTL 361
           K +SI IREVW++NL EEFALIRE+VD+F+YIAMDTEFPGVVL+PV TFK  N+ NYRTL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 362 KDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQLLRDSG 421
           K+NVD+L LIQ+GLTFS+ENGNLPTCGTDK+CIWQFNFREFNI EDIYA++SI+LLR  G
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 422 IDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILPDTQED 481
           IDFKKN E+GIDV RF EL+MSSGIVLND++ WVTFH GYDFGYL+KLLTC+ LP  Q D
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 482 ------------------------------KVAETLEIERVGVCHQAGSDSLLTACTFRK 535
                                         ++AE + +ERVG+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

[Close]

BLAST of Carg09359-RA vs. TAIR10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 342.0 bits (876), Expect = 6.8e-94
Identity = 169/274 (61.68%), Postives = 203/274 (74.09%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MS F K +SI IREVWN NL+EE  LIR+VVD F Y+AMDTEFPG+V+RPVGTFK+  ++
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 416
           +Y TLK NV+IL +IQLGLTFS E GNLPTCGTDKYCIWQFNFREF++  DI+A DSI+L
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 417 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 476
           L+ SGID  KN  +GID +RF+ELLMSSGIVLN++V+WVTFHSGYDFGYLLKLLTCQ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 477 DTQED------------------------------KVAETLEIERVGVCHQAGSDSLLTA 536
           D+Q D                              K+AE LE+ERVG+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 537 CTFRKLRDTFFSGSTQKYAGTSVGKRVDSCNGGE 541
           CTFRKL++ FF G   KY+G   G  V++   G+
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENEANGK 274

[Close]

BLAST of Carg09359-RA vs. TAIR10
Match: AT1G15920.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 258.8 bits (660), Expect = 7.5e-69
Identity = 133/263 (50.57%), Postives = 167/263 (63.50%), Query Frame = 0


Query: 304 ESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPV------GTFKNINEFN 363
           ++I IREVWNHNLE+E ALI + +D F Y+AMDTEFPG+V + V                
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVXXXXXXXXXXXXXXXX 71

Query: 364 YRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQLL 423
                    +L LIQLGLT S+E GNLPTCGT+K CIWQFNFREFN+  D++A DSI+LL
Sbjct: 72  XXXXXXXXXMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 424 RDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILPD 483
           R S ID +KN E G+D +RF+ELLM SG+VLND ++WVTFH GYDFGYLLKLL+ + LP+
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 484 TQED------------------------------KVAETLEIERVGVCHQAGSDSLLTAC 531
              D                              K+AE L ++RVG+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

[Close]

BLAST of Carg09359-RA vs. TAIR10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 229.9 bits (585), Expect = 3.8e-60
Identity = 125/269 (46.47%), Postives = 167/269 (62.08%), Query Frame = 0


Query: 301 PKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEFNYRT 360
           P   ++  REVW  NLE EF LI E++D + +I+MDTEFPGV+ +    F N ++  Y  
Sbjct: 12  PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTL 71

Query: 361 LKDNVDILNLIQLGLTFSEENGNLPTCGTDKY--CIWQFNFREFNITEDIYATDSIQLLR 420
           LK NVD L+LIQ+GLT S+ NGNLP  G D +   IW+FNFR+F++  D +A DSI+LLR
Sbjct: 72  LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 131

Query: 421 DSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP-- 480
             GIDF++N  +G++  RF+EL+MSSG+V N+ V WVTFHS YDFGYL+K+LT + LP  
Sbjct: 132 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 191

Query: 481 -----------------DTQE-------------DKVAETLEIER-VGVCHQAGSDSLLT 534
                            D +              D+VA TLE+ R VG CHQAGSDSLLT
Sbjct: 192 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 251

[Close]

BLAST of Carg09359-RA vs. Swiss-Prot
Match: sp|Q9SKZ2|CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 348.6 bits (893), Expect = 1.3e-94
Identity = 174/270 (64.44%), Postives = 204/270 (75.56%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MS F K +SI IREVWN NLE E ALIREVVD F ++AMDTEFPG+V RPVGTFK   E+
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTD-KYCIWQFNFREFNITEDIYATDSIQ 416
           +Y TLK NV+IL +IQLGLTFS+E GNLPTCGTD KYCIWQFNFREF++  DIYATDSI+
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 417 LLRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQIL 476
           LLR SGIDF KN E GID +RF+ELLMSSGIVLN++V+WVTFHSGYDFGYLLKLLTCQ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 477 PDTQE------------------------------DKVAETLEIERVGVCHQAGSDSLLT 536
           P+TQ                               +K+AE L++ERVG+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

[Close]

BLAST of Carg09359-RA vs. Swiss-Prot
Match: sp|Q9SAI2|CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 7.2e-93
Identity = 168/269 (62.45%), Postives = 201/269 (74.72%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MS F K +SI IREVWN NL+EE  LIR+VVD F Y+AMDTEFPG+V+RPVGTFK+  ++
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 416
           +Y TLK NV+IL +IQLGLTFS E GNLPTCGTDKYCIWQFNFREF++  DI+A DSI+L
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 417 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 476
           L+ SGID  KN  +GID +RF+ELLMSSGIVLN++V+WVTFHSGYDFGYLLKLLTCQ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 477 DTQED------------------------------KVAETLEIERVGVCHQAGSDSLLTA 536
           D+Q D                              K+AE LE+ERVG+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

[Close]

BLAST of Carg09359-RA vs. Swiss-Prot
Match: sp|Q9LEU4|CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 9.4e-93
Identity = 168/263 (63.88%), Postives = 201/263 (76.43%), Query Frame = 0


Query: 302 KAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEFNYRTL 361
           K +SI IREVW++NL EEFALIRE+VD+F+YIAMDTEFPGVVL+PV TFK  N+ NYRTL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 362 KDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQLLRDSG 421
           K+NVD+L LIQ+GLTFS+ENGNLPTCGTDK+CIWQFNFREFNI EDIYA++SI+LLR  G
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 422 IDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILPDTQED 481
           IDFKKN E+GIDV RF EL+MSSGIVLND++ WVTFH GYDFGYL+KLLTC+ LP  Q D
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 482 ------------------------------KVAETLEIERVGVCHQAGSDSLLTACTFRK 535
                                         ++AE + +ERVG+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

[Close]

BLAST of Carg09359-RA vs. Swiss-Prot
Match: sp|Q9S9P2|CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-67
Identity = 133/263 (50.57%), Postives = 167/263 (63.50%), Query Frame = 0


Query: 304 ESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPV------GTFKNINEFN 363
           ++I IREVWNHNLE+E ALI + +D F Y+AMDTEFPG+V + V                
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVXXXXXXXXXXXXXXXX 71

Query: 364 YRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQLL 423
                    +L LIQLGLT S+E GNLPTCGT+K CIWQFNFREFN+  D++A DSI+LL
Sbjct: 72  XXXXXXXXXMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 424 RDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILPD 483
           R S ID +KN E G+D +RF+ELLM SG+VLND ++WVTFH GYDFGYLLKLL+ + LP+
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 484 TQED------------------------------KVAETLEIERVGVCHQAGSDSLLTAC 531
              D                              K+AE L ++RVG+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

[Close]

BLAST of Carg09359-RA vs. Swiss-Prot
Match: sp|Q08BM8|CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio OX=7955 GN=cnot7 PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.6e-60
Identity = 129/255 (50.59%), Postives = 162/255 (63.53%), Query Frame = 0


Query: 308 IREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEFNYRTLKDNVDI 367
           I EVW  NLEEE   IR+V  +FNYIAMDTEFPGVV RP+G F++  ++ Y+ L+ NVD+
Sbjct: 12  ICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71

Query: 368 LNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQLLRDSGIDFKKN 427
           L +IQLGLTF  E G  P  GT     WQFNF+ FN+TED+YA DSI+LL  SGI FKK+
Sbjct: 72  LKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKH 131

Query: 428 KEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILPDTQED------ 487
           +EEGI+   F+ELLM+SG+VL + V W++FHSGYDFGYL+K+L+   LPD + D      
Sbjct: 132 EEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILR 191

Query: 488 ------------------------KVAETLEIERVGVCHQAGSDSLLTACTFRKLRDTFF 531
                                   +VAE LE+ER+G  HQAGSDSLLT   F K+R+ FF
Sbjct: 192 LFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 251

[Close]

BLAST of Carg09359-RA vs. TrEMBL
Match: tr|A0A2P5RUW6|A0A2P5RUW6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD12480 PE=4 SV=1)

HSP 1 Score: 543.1 bits (1398), Expect = 7.3e-151
Identity = 280/513 (54.58%), Postives = 330/513 (64.33%), Query Frame = 0


Query: 53  MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 112
           MS+LPK DSI IREVW+DN+EEEFALIREIVD + Y+AMDTEFPG+VLRP+G FK+  DY
Sbjct: 1   MSLLPKSDSIHIREVWDDNVEEEFALIREIVDDYPYVAMDTEFPGIVLRPVGYFKSSYDY 60

Query: 113 NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 172
           +YQTLKDNVDMLKL+QLGLTFSDE GNLPTCGTD +CIWQFNFREFN+  D+FA+DSIEL
Sbjct: 61  HYQTLKDNVDMLKLVQLGLTFSDEKGNLPTCGTDKYCIWQFNFREFNVNKDVFANDSIEL 120

Query: 173 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFELNCSLYGTVLAH 232
           LRQ GIDF+KNNE+GID  RF                                       
Sbjct: 121 LRQSGIDFKKNNEKGIDAMRF--------------------------------------- 180

Query: 233 DIALVTLSFLILIMHETQTYLWLGNSESNERAMEIDRFLCTSDMAWSLSKLETKETEPTS 292
              +VT+                                                     
Sbjct: 181 ---VVTI----------------------------------------------------- 240

Query: 293 ENQGMSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKN 352
                              W+ N+EEEFALIRE+VD + Y+AMDTEFPG+VLRPVG FK+
Sbjct: 241 ------------------XWDDNVEEEFALIREIVDDYPYVAMDTEFPGIVLRPVGYFKS 300

Query: 353 INEFNYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATD 412
             +++Y+TLKDNVD+L L+QLGLTFS+E GNLPTCGTDKYCIWQFNFREFN+ +D++A D
Sbjct: 301 SYDYHYQTLKDNVDMLKLVQLGLTFSDEKGNLPTCGTDKYCIWQFNFREFNVNKDVFAND 360

Query: 413 SIQLLRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTC 472
           SI+LLR SGIDFKKN E+GID  RF ELLMSSGIVLND+V+WVTFHSGYDFGYLLKLLTC
Sbjct: 361 SIELLRQSGIDFKKNNEKGIDAMRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTC 400

Query: 473 QILPDTQE------------------------------DKVAETLEIERVGVCHQAGSDS 532
           Q LPDTQ                               +K+AE LE+ERVG+CHQAGSDS
Sbjct: 421 QNLPDTQVGFFSLINIYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDS 400

Query: 533 LLTACTFRKLRDTFFSGSTQKYAGTSVGKRVDS 536
           LLTACTFRKL++ FFSGS +KY+G   G  V++
Sbjct: 481 LLTACTFRKLKENFFSGSLEKYSGVLYGLGVEN 400

[Close]

BLAST of Carg09359-RA vs. TrEMBL
Match: tr|A0A0A0LSM4|A0A0A0LSM4_CUCSA (Ccr4-associated factor OS=Cucumis sativus OX=3659 GN=Csa_2G382590 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.5e-106
Identity = 192/269 (71.38%), Postives = 218/269 (81.04%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MS  PK ESI IREVWN NLEEEFALIR++VDQFNYIAMDTEFPGVV+RPVG+FKNINE+
Sbjct: 1   MSILPKGESINIREVWNDNLEEEFALIRDIVDQFNYIAMDTEFPGVVVRPVGSFKNINEY 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 416
           NYRTL++NVD L LIQLGLTFS+ENGNLPTCGTDK+CIWQFNFREFNI +DIYA+DSI+L
Sbjct: 61  NYRTLRENVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNICDDIYASDSIEL 120

Query: 417 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 476
           LR+ GIDF+K  EEGIDV RF ELLMSSGIVLND+++WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LRECGIDFQKTHEEGIDVNRFGELLMSSGIVLNDNIFWVTFHSGYDFGYLLKLLTCRNLP 180

Query: 477 DTQED------------------------------KVAETLEIERVGVCHQAGSDSLLTA 536
           +TQ +                              K+AE LE+ER+GVCHQAGSDSLLTA
Sbjct: 181 ETQAEFFDLIHMYFPMVYDIKHLMRFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

[Close]

BLAST of Carg09359-RA vs. TrEMBL
Match: tr|B9RNX3|B9RNX3_RICCO (Ccr4-associated factor, putative OS=Ricinus communis OX=3988 GN=RCOM_0921770 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 3.2e-106
Identity = 190/269 (70.63%), Postives = 217/269 (80.67%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MS  PK +SI+IREVWN NLEEEF LIRE+VDQFNY+AMDTEFPGVVLRPVG FKNIN++
Sbjct: 1   MSIIPKGDSIHIREVWNDNLEEEFTLIREIVDQFNYVAMDTEFPGVVLRPVGNFKNINDY 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 416
           NY+TLKDNVD+L LIQLGLTFS+ENGNLPTCGTDK+CIWQFNFREFNI+EDI+A+DSI+L
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIEL 120

Query: 417 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 476
           LR  GIDFKKN E+GIDV RF EL+MSSGIVLND V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LRQCGIDFKKNNEKGIDVNRFGELMMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 477 DTQE------------------------------DKVAETLEIERVGVCHQAGSDSLLTA 536
           DTQ                               +K+AE LE+ERVG+CHQAGSDSLLT+
Sbjct: 181 DTQAGFFDLINTYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

[Close]

BLAST of Carg09359-RA vs. TrEMBL
Match: tr|A0A2I4ES95|A0A2I4ES95_9ROSI (probable CCR4-associated factor 1 homolog 7 OS=Juglans regia OX=51240 GN=LOC108992231 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.6e-105
Identity = 192/269 (71.38%), Postives = 217/269 (80.67%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MS  PK +SI IR+VWN NLEEEFALIREVVD +NYIAMDTEFPGVVLRPVGTFKNIN++
Sbjct: 1   MSILPKGDSIQIRDVWNDNLEEEFALIREVVDNYNYIAMDTEFPGVVLRPVGTFKNINDY 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 416
           NY+TLKDNVD+L LIQLGLTFS+E+GNLPTCGTD +CIWQFNFREFNI+EDI+A+DSI+L
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDEHGNLPTCGTDMFCIWQFNFREFNISEDIFASDSIEL 120

Query: 417 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 476
           L  SGIDFKKN E+GIDV RF ELLMSSGIVLND V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LHQSGIDFKKNNEKGIDVNRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 477 DTQE------------------------------DKVAETLEIERVGVCHQAGSDSLLTA 536
           DTQ                               +K+AE L++ERVGVCHQAGSDSLLTA
Sbjct: 181 DTQAGFFDLINMYFPIVYDIKHLMKFCNSLHGGLNKLAELLDVERVGVCHQAGSDSLLTA 240

[Close]

BLAST of Carg09359-RA vs. TrEMBL
Match: tr|A0A1S3TXE2|A0A1S3TXE2_VIGRR (probable CCR4-associated factor 1 homolog 7 OS=Vigna radiata var. radiata OX=3916 GN=LOC106759661 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.6e-105
Identity = 191/269 (71.00%), Postives = 217/269 (80.67%), Query Frame = 0


Query: 297 MSTFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGTFKNINEF 356
           MS  PK +S+ IREVWN NLEEEFALIRE+VD++NY+AMDTEFPGVVLRPVG FKNIN++
Sbjct: 1   MSIIPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDY 60

Query: 357 NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL 416
           NY+TLKDNVD+L LIQLGLTFS+ENGNLPTCGT+  CIWQFNFREFNI+EDI+A+DSI+L
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTESPCIWQFNFREFNISEDIFASDSIEL 120

Query: 417 LRDSGIDFKKNKEEGIDVRRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP 476
           LR  GIDFKKN E+GIDV RF ELLMSSGIVLND+V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 477 DTQE------------------------------DKVAETLEIERVGVCHQAGSDSLLTA 536
           DTQ                               +K+AE LE+ERVGVCHQAGSDSLLT+
Sbjct: 181 DTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTS 240

The following BLAST results are available for this feature:

BLAST of Carg09359-RA vs. NCBI nr


Match Name	E-value	Identity	Description
PPD90595.1	1.1e-150	54.58	hypothetical protein GOBAR_DD12480 [Gossypium barbadense]	[more]
XP_022962455.1	1.0e-124	85.50	probable CCR4-associated factor 1 homolog 7 [Cucurbita moschata] >XP_022962456.1...	[more]
XP_022996959.1	3.3e-123	84.39	probable CCR4-associated factor 1 homolog 7 [Cucurbita maxima] >XP_022996960.1 p...	[more]
XP_023545659.1	1.3e-122	84.01	probable CCR4-associated factor 1 homolog 7 [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_022132176.1	2.8e-109	73.61	probable CCR4-associated factor 1 homolog 7 [Momordica charantia]	[more]

BLAST of Carg09359-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32070.1	7.2e-96	64.44	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G10960.1	5.2e-94	63.88	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	6.8e-94	61.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G15920.2	7.5e-69	50.57	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	3.8e-60	46.47	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Carg09359-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SKZ2\|CAF1G_ARATH	1.3e-94	64.44	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|Q9SAI2\|CAF1F_ARATH	7.2e-93	62.45	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|Q9LEU4\|CAF1J_ARATH	9.4e-93	63.88	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q9S9P2\|CAF1B_ARATH	1.4e-67	50.57	Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|Q08BM8\|CNOT7_DANRE	3.6e-60	50.59	CCR4-NOT transcription complex subunit 7 OS=Danio rerio OX=7955 GN=cnot7 PE=2 SV...	[more]

BLAST of Carg09359-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5RUW6\|A0A2P5RUW6_GOSBA	7.3e-151	54.58	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD12480 PE=4 SV...	[more]
tr\|A0A0A0LSM4\|A0A0A0LSM4_CUCSA	2.5e-106	71.38	Ccr4-associated factor OS=Cucumis sativus OX=3659 GN=Csa_2G382590 PE=4 SV=1	[more]
tr\|B9RNX3\|B9RNX3_RICCO	3.2e-106	70.63	Ccr4-associated factor, putative OS=Ricinus communis OX=3988 GN=RCOM_0921770 PE=...	[more]
tr\|A0A2I4ES95\|A0A2I4ES95_9ROSI	1.6e-105	71.38	probable CCR4-associated factor 1 homolog 7 OS=Juglans regia OX=51240 GN=LOC1089...	[more]
tr\|A0A1S3TXE2\|A0A1S3TXE2_VIGRR	1.6e-105	71.00	probable CCR4-associated factor 1 homolog 7 OS=Vigna radiata var. radiata OX=391...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR036397	RNaseH_sf
IPR006941	RNase_CAF1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09359	Carg09359	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09359-RA	Carg09359-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09359-RA.three_prime_UTR.1	Carg09359-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09359-RA.CDS.6	Carg09359-RA.CDS.6	CDS
Carg09359-RA.CDS.5	Carg09359-RA.CDS.5	CDS
Carg09359-RA.CDS.4	Carg09359-RA.CDS.4	CDS
Carg09359-RA.CDS.3	Carg09359-RA.CDS.3	CDS
Carg09359-RA.CDS.2	Carg09359-RA.CDS.2	CDS
Carg09359-RA.CDS.1	Carg09359-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09359-RA.exon.6	Carg09359-RA.exon.6	exon
Carg09359-RA.exon.5	Carg09359-RA.exon.5	exon
Carg09359-RA.exon.4	Carg09359-RA.exon.4	exon
Carg09359-RA.exon.3	Carg09359-RA.exon.3	exon
Carg09359-RA.exon.2	Carg09359-RA.exon.2	exon
Carg09359-RA.exon.1	Carg09359-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 311..432 e-value: 1.9E-11 score: 43.6 coord: 67..188 e-value: 1.4E-10 score: 40.8
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 294..532 e-value: 1.5E-90 score: 305.2 coord: 52..226 e-value: 1.3E-75 score: 256.1
None	No IPR available	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 53..223 coord: 297..481 coord: 481..536
None	No IPR available	PANTHER	PTHR10797:SF31	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED	coord: 53..223 coord: 297..481 coord: 481..536
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 307..522
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 58..220