Carg12940-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAATACGCATTTCGTAATATATATATATATATTTGTCGCATTATCGGAGCAATATCTAGAAGGGTCTAATTTCTCCGATAAAACCCATTTCCACTGCTGCAGCTGCTTTCCAGTTTCTAGGGTTTATCTTCATCGTTCTTCTATAATCTTCTATCCAATTGGAGCCGCTTCTCCATCTTTATCTTCAGGTACTCATCTCTTTCTTCTTTTCTCTCTCGATTCTTCCGGGAAATTTCATTTCTGTGTCCTTGCAATGTGTTTGGCGGACAAATTTTAGCGTTTTGGAGCTTGAATTGAAATTGACTTAAACTCGTTTGAAATTGTTCATTTTCTAATCTTTTTCATATTTGGTTTCTGGATTTTGGGTGTTTTTTGAGGTTAGAACGTGAAATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCGAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCTTGTGAGAGTCGGGGGTCGGTCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGGTTCCACACTATCCATTCTGCTAGTGCCTGTCATTTTTGGCTTTAGTTTGGGGTTTCAGACGAGGATTTGCGAAATGTAGTTGTGATTTTGCTTTTCATTAACCAATTTTAAGTTCTTTGTTCTGAGTTTTATGTCTGTGAAATATGCCTCATCTTCAGGTCTATAATTTGGTTTCTTTAATCTCTGGTCGTCATTTTCCTTCCAATTTTCTTCCTGTTTCCATTTTGCAACTTGTTGTCTATTTAGTTGCCAAGTTTCTCGTTTGTTGATATTACGTTTTTGACTGTCCTGTATGGTTACGTAATTACAATCATAGCTGCAATCTGCGTGCATCTGTTGTGACGGATAAGTTTTCCTCCAATTACTCTGTGCAGCTGCAACTACGAAAACTGTAATTTTTGTGTGTCGAGATTCGTGAAACAATTTGAGTTGATATAAGTAAACTGCTACAAGTTTCTGGCAGGGTGCATTTTATGTTGGAGGGTGATCTTTGAATGCATGTATATAGCAATTTACTTACGTGCGTGAATTGCAATGTTTCAGTACACTTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAACCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGGTATGCATTTAATCTGTTTACGCTCTTAATTCATTCAATGTGTTTTGTTATGTTCTATAACCTTGTGTTTTTTGATTCAATAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCTTGAAGGAAGACGATATAGTCGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTCTGTCTTCATTTTACTTAGTACTTCAATGTTCCTTTTTGGCGTAACCCATAAGACCAAATTGTCCGAATCTTCCGATATGCTTGCCCGATATCTTTGGGGGTGGCGTGTGTTGAAAATCTTTCTGATTTACATTTTGAGTCACTGACATATGGTTTTTACTCCTTGCAATTGTCTTCCATCCTTTCCCTTAAAAGTAGGAAAGAGTTCTATATGGTCTAGTCTTCCATTATTTGGTTCAAATGACAGAAATGTAATACTTGTTCTAAAATACTGGATCACAGGTGGCCGAGGCCGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGCAAAGAGAAACCATCCATCGGAACGGTCAGTATAAGCATACAAAAGCGCACCCTCCTAGTTTAATTATAGATACCAATGCCTGTATGATTGACATAAAACATTTGGTTCACACAGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATTGCCGTGGGAGATAACGCGATGTACTCTAAGTACGCCGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCATTGAGGGCTTCGGAC ATGGGAAATACGCATTTCGTAATATATATATATATATTTGTCGCATTATCGGAGCAATATCTAGAAGGGTCTAATTTCTCCGATAAAACCCATTTCCACTGCTGCAGCTGCTTTCCAGTTTCTAGGGTTTATCTTCATCGTTCTTCTATAATCTTCTATCCAATTGGAGCCGCTTCTCCATCTTTATCTTCAGAACGTGAAATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCGAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCTTGTGAGAGTCGGGGGTCGGTCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAACCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCTTGAAGGAAGACGATATAGTCGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTGGCCGAGGCCGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGCAAAGAGAAACCATCCATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATTGCCGTGGGAGATAACGCGATGTACTCTAAGTACGCCGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCATTGAGGGCTTCGGAC ATGGGAAATACGCATTTCGTAATATATATATATATATTTGTCGCATTATCGGAGCAATATCTAGAAGGGTCTAATTTCTCCGATAAAACCCATTTCCACTGCTGCAGCTGCTTTCCAGTTTCTAGGGTTTATCTTCATCGTTCTTCTATAATCTTCTATCCAATTGGAGCCGCTTCTCCATCTTTATCTTCAGAACGTGAAATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCGAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCTTGTGAGAGTCGGGGGTCGGTCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAACCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCTTGAAGGAAGACGATATAGTCGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTGGCCGAGGCCGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGCAAAGAGAAACCATCCATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATTGCCGTGGGAGATAACGCGATGTACTCTAAGTACGCCGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCATTGAGGGCTTCGGAC MGNTHFVIYIYIFVALSEQYLEGSNFSDKTHFHCCSCFPVSRVYLHRSSIIFYPIGAASPSLSSEREMATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGSDYIALRASD
BLAST of Carg12940-RA vs. NCBI nr
Match: XP_022961221.1 (20 kDa chaperonin, chloroplastic-like [Cucurbita moschata] >XP_022961222.1 20 kDa chaperonin, chloroplastic-like [Cucurbita moschata] >XP_022961223.1 20 kDa chaperonin, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 467.2 bits (1201), Expect = 4.3e-128 Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0
BLAST of Carg12940-RA vs. NCBI nr
Match: XP_023516844.1 (20 kDa chaperonin, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023516845.1 20 kDa chaperonin, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023516846.1 20 kDa chaperonin, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 467.2 bits (1201), Expect = 4.3e-128 Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0
BLAST of Carg12940-RA vs. NCBI nr
Match: XP_022988297.1 (20 kDa chaperonin, chloroplastic-like [Cucurbita maxima] >XP_022988298.1 20 kDa chaperonin, chloroplastic-like [Cucurbita maxima] >XP_022988299.1 20 kDa chaperonin, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 464.5 bits (1194), Expect = 2.8e-127 Identity = 246/249 (98.80%), Postives = 247/249 (99.20%), Query Frame = 0
BLAST of Carg12940-RA vs. NCBI nr
Match: XP_023518874.1 (20 kDa chaperonin, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 439.1 bits (1128), Expect = 1.3e-119 Identity = 229/249 (91.97%), Postives = 240/249 (96.39%), Query Frame = 0
BLAST of Carg12940-RA vs. NCBI nr
Match: XP_022966439.1 (20 kDa chaperonin, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 438.7 bits (1127), Expect = 1.6e-119 Identity = 228/249 (91.57%), Postives = 240/249 (96.39%), Query Frame = 0
BLAST of Carg12940-RA vs. TAIR10
Match: AT5G20720.1 (chaperonin 20) HSP 1 Score: 339.7 bits (870), Expect = 1.9e-93 Identity = 182/251 (72.51%), Postives = 209/251 (83.27%), Query Frame = 0
BLAST of Carg12940-RA vs. TAIR10
Match: AT1G14980.1 (chaperonin 10) HSP 1 Score: 54.3 bits (129), Expect = 1.6e-07 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 0
BLAST of Carg12940-RA vs. TAIR10
Match: AT3G60210.1 (GroES-like family protein) HSP 1 Score: 48.5 bits (114), Expect = 8.7e-06 Identity = 33/96 (34.38%), Postives = 55/96 (57.29%), Query Frame = 0
BLAST of Carg12940-RA vs. TAIR10
Match: AT2G44650.1 (chloroplast chaperonin 10) HSP 1 Score: 46.2 bits (108), Expect = 4.3e-05 Identity = 29/97 (29.90%), Postives = 54/97 (55.67%), Query Frame = 0
BLAST of Carg12940-RA vs. Swiss-Prot
Match: sp|O65282|CH20_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 SV=2) HSP 1 Score: 339.7 bits (870), Expect = 3.4e-92 Identity = 182/251 (72.51%), Postives = 209/251 (83.27%), Query Frame = 0
BLAST of Carg12940-RA vs. Swiss-Prot
Match: sp|Q02073|CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea OX=3562 GN=CPN21 PE=2 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 3.3e-79 Identity = 155/248 (62.50%), Postives = 186/248 (75.00%), Query Frame = 0
BLAST of Carg12940-RA vs. Swiss-Prot
Match: sp|B2A5V2|CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) OX=457570 GN=groS PE=3 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.5e-23 Identity = 54/94 (57.45%), Postives = 77/94 (81.91%), Query Frame = 0
BLAST of Carg12940-RA vs. Swiss-Prot
Match: sp|Q60023|CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii OX=29323 GN=groS PE=1 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 5.7e-23 Identity = 53/92 (57.61%), Postives = 73/92 (79.35%), Query Frame = 0
BLAST of Carg12940-RA vs. Swiss-Prot
Match: sp|B0KBR4|CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=groS PE=3 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 5.7e-23 Identity = 53/92 (57.61%), Postives = 73/92 (79.35%), Query Frame = 0
BLAST of Carg12940-RA vs. TrEMBL
Match: tr|A0A1S3BPU5|A0A1S3BPU5_CUCME (20 kDa chaperonin, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492392 PE=3 SV=1) HSP 1 Score: 432.2 bits (1110), Expect = 1.0e-117 Identity = 227/250 (90.80%), Postives = 239/250 (95.60%), Query Frame = 0
BLAST of Carg12940-RA vs. TrEMBL
Match: tr|A0A0A0LZM6|A0A0A0LZM6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G597740 PE=3 SV=1) HSP 1 Score: 429.5 bits (1103), Expect = 6.6e-117 Identity = 225/250 (90.00%), Postives = 238/250 (95.20%), Query Frame = 0
BLAST of Carg12940-RA vs. TrEMBL
Match: tr|A0A2N9EFX6|A0A2N9EFX6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1462 PE=3 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 4.4e-105 Identity = 203/250 (81.20%), Postives = 223/250 (89.20%), Query Frame = 0
BLAST of Carg12940-RA vs. TrEMBL
Match: tr|A0A2P4IMG7|A0A2P4IMG7_QUESU (20 kDa chaperonin, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_58478 PE=3 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 9.9e-105 Identity = 204/251 (81.27%), Postives = 223/251 (88.84%), Query Frame = 0
BLAST of Carg12940-RA vs. TrEMBL
Match: tr|A0A2N9I5C9|A0A2N9I5C9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47490 PE=3 SV=1) HSP 1 Score: 385.2 bits (988), Expect = 1.4e-103 Identity = 204/250 (81.60%), Postives = 221/250 (88.40%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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