Carg12940 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12940
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	10 kDa chaperonin
Location	Cucurbita_argyrosperma_scaffold_052 : 217008 .. 219150 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATACGCATTTCGTAATATATATATATATATTTGTCGCATTATCGGAGCAATATCTAGAAGGGTCTAATTTCTCCGATAAAACCCATTTCCACTGCTGCAGCTGCTTTCCAGTTTCTAGGGTTTATCTTCATCGTTCTTCTATAATCTTCTATCCAATTGGAGCCGCTTCTCCATCTTTATCTTCAGGTACTCATCTCTTTCTTCTTTTCTCTCTCGATTCTTCCGGGAAATTTCATTTCTGTGTCCTTGCAATGTGTTTGGCGGACAAATTTTAGCGTTTTGGAGCTTGAATTGAAATTGACTTAAACTCGTTTGAAATTGTTCATTTTCTAATCTTTTTCATATTTGGTTTCTGGATTTTGGGTGTTTTTTGAGGTTAGAACGTGAAATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCGAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCTTGTGAGAGTCGGGGGTCGGTCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGGTTCCACACTATCCATTCTGCTAGTGCCTGTCATTTTTGGCTTTAGTTTGGGGTTTCAGACGAGGATTTGCGAAATGTAGTTGTGATTTTGCTTTTCATTAACCAATTTTAAGTTCTTTGTTCTGAGTTTTATGTCTGTGAAATATGCCTCATCTTCAGGTCTATAATTTGGTTTCTTTAATCTCTGGTCGTCATTTTCCTTCCAATTTTCTTCCTGTTTCCATTTTGCAACTTGTTGTCTATTTAGTTGCCAAGTTTCTCGTTTGTTGATATTACGTTTTTGACTGTCCTGTATGGTTACGTAATTACAATCATAGCTGCAATCTGCGTGCATCTGTTGTGACGGATAAGTTTTCCTCCAATTACTCTGTGCAGCTGCAACTACGAAAACTGTAATTTTTGTGTGTCGAGATTCGTGAAACAATTTGAGTTGATATAAGTAAACTGCTACAAGTTTCTGGCAGGGTGCATTTTATGTTGGAGGGTGATCTTTGAATGCATGTATATAGCAATTTACTTACGTGCGTGAATTGCAATGTTTCAGTACACTTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAACCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGGTATGCATTTAATCTGTTTACGCTCTTAATTCATTCAATGTGTTTTGTTATGTTCTATAACCTTGTGTTTTTTGATTCAATAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCTTGAAGGAAGACGATATAGTCGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTCTGTCTTCATTTTACTTAGTACTTCAATGTTCCTTTTTGGCGTAACCCATAAGACCAAATTGTCCGAATCTTCCGATATGCTTGCCCGATATCTTTGGGGGTGGCGTGTGTTGAAAATCTTTCTGATTTACATTTTGAGTCACTGACATATGGTTTTTACTCCTTGCAATTGTCTTCCATCCTTTCCCTTAAAAGTAGGAAAGAGTTCTATATGGTCTAGTCTTCCATTATTTGGTTCAAATGACAGAAATGTAATACTTGTTCTAAAATACTGGATCACAGGTGGCCGAGGCCGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGCAAAGAGAAACCATCCATCGGAACGGTCAGTATAAGCATACAAAAGCGCACCCTCCTAGTTTAATTATAGATACCAATGCCTGTATGATTGACATAAAACATTTGGTTCACACAGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATTGCCGTGGGAGATAACGCGATGTACTCTAAGTACGCCGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCATTGAGGGCTTCGGAC

mRNA sequence

ATGGGAAATACGCATTTCGTAATATATATATATATATTTGTCGCATTATCGGAGCAATATCTAGAAGGGTCTAATTTCTCCGATAAAACCCATTTCCACTGCTGCAGCTGCTTTCCAGTTTCTAGGGTTTATCTTCATCGTTCTTCTATAATCTTCTATCCAATTGGAGCCGCTTCTCCATCTTTATCTTCAGAACGTGAAATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCGAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCTTGTGAGAGTCGGGGGTCGGTCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAACCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCTTGAAGGAAGACGATATAGTCGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTGGCCGAGGCCGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGCAAAGAGAAACCATCCATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATTGCCGTGGGAGATAACGCGATGTACTCTAAGTACGCCGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCATTGAGGGCTTCGGAC

Coding sequence (CDS)

ATGGGAAATACGCATTTCGTAATATATATATATATATTTGTCGCATTATCGGAGCAATATCTAGAAGGGTCTAATTTCTCCGATAAAACCCATTTCCACTGCTGCAGCTGCTTTCCAGTTTCTAGGGTTTATCTTCATCGTTCTTCTATAATCTTCTATCCAATTGGAGCCGCTTCTCCATCTTTATCTTCAGAACGTGAAATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCGAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCTTGTGAGAGTCGGGGGTCGGTCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAACCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCTTGAAGGAAGACGATATAGTCGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTGGCCGAGGCCGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGCAAAGAGAAACCATCCATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATTGCCGTGGGAGATAACGCGATGTACTCTAAGTACGCCGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCATTGAGGGCTTCGGAC

Protein sequence

MGNTHFVIYIYIFVALSEQYLEGSNFSDKTHFHCCSCFPVSRVYLHRSSIIFYPIGAASPSLSSEREMATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGSDYIALRASD

Homology

[Close]

BLAST of Carg12940 vs. NCBI nr
Match: XP_022961221.1 (20 kDa chaperonin, chloroplastic-like [Cucurbita moschata] >XP_022961222.1 20 kDa chaperonin, chloroplastic-like [Cucurbita moschata] >XP_022961223.1 20 kDa chaperonin, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 467.2 bits (1201), Expect = 4.3e-128
Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 68  MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAPK 127
           MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVA VRVGGRSKRSYTGLVVRAATVVAPK
Sbjct: 1   MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVAHVRVGGRSKRSYTGLVVRAATVVAPK 60

Query: 128 YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK 187
           YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK
Sbjct: 61  YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK 120

Query: 188 TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT 247
           TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT
Sbjct: 121 TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT 180

Query: 248 AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS 307
           AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS
Sbjct: 181 AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS 240

Query: 308 DYIALRASD 317
           DYIALRA+D
Sbjct: 241 DYIALRATD 249

[Close]

BLAST of Carg12940 vs. NCBI nr
Match: XP_023516844.1 (20 kDa chaperonin, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023516845.1 20 kDa chaperonin, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023516846.1 20 kDa chaperonin, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 467.2 bits (1201), Expect = 4.3e-128
Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 68  MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAPK 127
           MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVA VRVGGR+KRSYTGLVVRAATVVAPK
Sbjct: 1   MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVAHVRVGGRAKRSYTGLVVRAATVVAPK 60

Query: 128 YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK 187
           YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK
Sbjct: 61  YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK 120

Query: 188 TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT 247
           TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT
Sbjct: 121 TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT 180

Query: 248 AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS 307
           AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS
Sbjct: 181 AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS 240

Query: 308 DYIALRASD 317
           DYIALRASD
Sbjct: 241 DYIALRASD 249

[Close]

BLAST of Carg12940 vs. NCBI nr
Match: XP_022988297.1 (20 kDa chaperonin, chloroplastic-like [Cucurbita maxima] >XP_022988298.1 20 kDa chaperonin, chloroplastic-like [Cucurbita maxima] >XP_022988299.1 20 kDa chaperonin, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 464.5 bits (1194), Expect = 2.8e-127
Identity = 246/249 (98.80%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 68  MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAPK 127
           MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVA VRVGG +KRSYTGLVVRAATVVAPK
Sbjct: 1   MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVAHVRVGGLAKRSYTGLVVRAATVVAPK 60

Query: 128 YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK 187
           YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK
Sbjct: 61  YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK 120

Query: 188 TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT 247
           TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT
Sbjct: 121 TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT 180

Query: 248 AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS 307
           AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS
Sbjct: 181 AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS 240

Query: 308 DYIALRASD 317
           DYIALRASD
Sbjct: 241 DYIALRASD 249

[Close]

BLAST of Carg12940 vs. NCBI nr
Match: XP_023518874.1 (20 kDa chaperonin, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.1 bits (1128), Expect = 1.3e-119
Identity = 229/249 (91.97%), Postives = 240/249 (96.39%), Query Frame = 0


Query: 68  MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAPK 127
           MA AQL GSLISA+NLPSF+GLRPSAVKFSPS+A + VGGR+ RSYTGLVVRAATVVAPK
Sbjct: 1   MAAAQLTGSLISAKNLPSFNGLRPSAVKFSPSIAHMIVGGRANRSYTGLVVRAATVVAPK 60

Query: 128 YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK 187
           YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGK+IGNTKVE+SVK
Sbjct: 61  YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKSIGNTKVESSVK 120

Query: 188 TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT 247
           TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVA AEEKT
Sbjct: 121 TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAAAEEKT 180

Query: 248 AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS 307
           AGGLLLTEASKEKPSIGTVIAVGPGHL+E+G +KPLSIA G+N MYSKYAGNEFKGKDGS
Sbjct: 181 AGGLLLTEASKEKPSIGTVIAVGPGHLDEEGNKKPLSIAAGNNVMYSKYAGNEFKGKDGS 240

Query: 308 DYIALRASD 317
           DYIALRASD
Sbjct: 241 DYIALRASD 249

[Close]

BLAST of Carg12940 vs. NCBI nr
Match: XP_022966439.1 (20 kDa chaperonin, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 438.7 bits (1127), Expect = 1.6e-119
Identity = 228/249 (91.57%), Postives = 240/249 (96.39%), Query Frame = 0


Query: 68  MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAPK 127
           MA AQL GSLISA+NLPSF+GLRPSAVKFSPS+A + VGGR+ RSYTGLVVRAATVVAPK
Sbjct: 1   MAAAQLTGSLISAKNLPSFNGLRPSAVKFSPSIAHMIVGGRANRSYTGLVVRAATVVAPK 60

Query: 128 YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVK 187
           YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVA+GEGK+IGNTKVE+SVK
Sbjct: 61  YTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAIGEGKSIGNTKVESSVK 120

Query: 188 TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKT 247
           TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVA AEEKT
Sbjct: 121 TGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAAAEEKT 180

Query: 248 AGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGS 307
           AGGLLLTEASKEKPSIGTVIAVGPGHL+E+G +KPLSIA G+N MYSKYAGNEFKGKDGS
Sbjct: 181 AGGLLLTEASKEKPSIGTVIAVGPGHLDEEGNKKPLSIAAGNNVMYSKYAGNEFKGKDGS 240

Query: 308 DYIALRASD 317
           DYIALRASD
Sbjct: 241 DYIALRASD 249

[Close]

BLAST of Carg12940 vs. TAIR10
Match: AT5G20720.1 (chaperonin 20)

HSP 1 Score: 339.7 bits (870), Expect = 1.9e-93
Identity = 182/251 (72.51%), Postives = 209/251 (83.27%), Query Frame = 0


Query: 68  MATAQLAGS--LISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVA 127
           MA  QL  S   +SAR+L S  GLR S+VKFS     ++ G   +  +  LVV+AA+VVA
Sbjct: 1   MAATQLTASPVTMSARSLASLDGLRASSVKFSS----LKPGTLRQSQFRRLVVKAASVVA 60

Query: 128 PKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEAS 187
           PKYTSIKPLGDRVLVKIKEAEEKT GGILLP+TAQSKPQGGEVVAVGEG+TIG  K++ +
Sbjct: 61  PKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDIT 120

Query: 188 VKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEE 247
           V TGAQ++YSKYAGTE+EFN  KHLILKEDDIVGILET+D KDL+PLNDRV IKVAEAEE
Sbjct: 121 VPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEE 180

Query: 248 KTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKD 307
           KTAGGLLLTE +KEKPSIGTVIAVGPG L+E+GK  PL ++ G   +YSKYAGN+FKGKD
Sbjct: 181 KTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKD 240

Query: 308 GSDYIALRASD 317
           GS+YIALRASD
Sbjct: 241 GSNYIALRASD 247

[Close]

BLAST of Carg12940 vs. TAIR10
Match: AT1G14980.1 (chaperonin 10)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-07
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 227 KDLQPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIA 286
           K L P  +R+L++      KT  G+LL E S  K + G VIAVGPG  ++DGK  P+S+ 
Sbjct: 3   KRLIPTFNRILVQRVIQPAKTESGILLPEKS-SKLNSGKVIAVGPGSRDKDGKLIPVSVK 62

Query: 287 VGDNAMYSKYAGNEFK 303
            GD  +  +Y G + K
Sbjct: 63  EGDTVLLPEYGGTQVK 77

[Close]

BLAST of Carg12940 vs. TAIR10
Match: AT3G60210.1 (GroES-like family protein)

HSP 1 Score: 48.5 bits (114), Expect = 8.7e-06
Identity = 33/96 (34.38%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 131 IKPLGDRVLVKIKEAEEKTDGGILLPTTAQ--SKPQGGEVVAVGEGKTIGNTKVEASVKT 190
           + P  DRVLV+++   EK+ GG+LLP +A    +   GEVV+V  G  +G       V+ 
Sbjct: 51  VVPQADRVLVRLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSV--GSEVG------EVEP 110

Query: 191 GAQVVYSKYAGTELEF--NGSKHLILKEDDIVGILE 223
           G +V++S  +  E++F    +KH   KE D++ I++
Sbjct: 111 GKKVLFSDMSAYEVDFGTEDAKHCFCKESDLLAIVQ 138

[Close]

BLAST of Carg12940 vs. TAIR10
Match: AT2G44650.1 (chloroplast chaperonin 10)

HSP 1 Score: 46.2 bits (108), Expect = 4.3e-05
Identity = 29/97 (29.90%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 129 TSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQ--SKPQGGEVVAVGEGKTIGNTKVEASV 188
           T + P  DRVLV++++   K+ GG+LLP  A    +   GE+++VG       ++V   V
Sbjct: 50  TKVVPQADRVLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVG-------SEVGQQV 109

Query: 189 KTGAQVVYSKYAGTELEF-NGSKHLILKEDDIVGILE 223
             G +V++S  +  E++    ++H   KE D++ ++E
Sbjct: 110 GPGKRVLFSDVSAYEVDLGTDARHCFCKESDLLALVE 139

[Close]

BLAST of Carg12940 vs. Swiss-Prot
Match: sp|O65282|CH20_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 SV=2)

HSP 1 Score: 339.7 bits (870), Expect = 3.4e-92
Identity = 182/251 (72.51%), Postives = 209/251 (83.27%), Query Frame = 0


Query: 68  MATAQLAGS--LISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVA 127
           MA  QL  S   +SAR+L S  GLR S+VKFS     ++ G   +  +  LVV+AA+VVA
Sbjct: 1   MAATQLTASPVTMSARSLASLDGLRASSVKFSS----LKPGTLRQSQFRRLVVKAASVVA 60

Query: 128 PKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEAS 187
           PKYTSIKPLGDRVLVKIKEAEEKT GGILLP+TAQSKPQGGEVVAVGEG+TIG  K++ +
Sbjct: 61  PKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDIT 120

Query: 188 VKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEE 247
           V TGAQ++YSKYAGTE+EFN  KHLILKEDDIVGILET+D KDL+PLNDRV IKVAEAEE
Sbjct: 121 VPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEE 180

Query: 248 KTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKD 307
           KTAGGLLLTE +KEKPSIGTVIAVGPG L+E+GK  PL ++ G   +YSKYAGN+FKGKD
Sbjct: 181 KTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKD 240

Query: 308 GSDYIALRASD 317
           GS+YIALRASD
Sbjct: 241 GSNYIALRASD 247

[Close]

BLAST of Carg12940 vs. Swiss-Prot
Match: sp|Q02073|CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea OX=3562 GN=CPN21 PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.3e-79
Identity = 155/248 (62.50%), Postives = 186/248 (75.00%), Query Frame = 0


Query: 69  ATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAPKY 128
           AT   + S ++   LPSF GLR SA   S     V     + RS+ GLVVRAA++   KY
Sbjct: 3   ATHLTSTSSLTINTLPSFEGLR-SASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKY 62

Query: 129 TSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKT 188
           TS+KPLGDRVL+K K  EEKT  GI LPT AQ KPQ GEVVA+G GK +G+ K+  +VKT
Sbjct: 63  TSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKT 122

Query: 189 GAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTA 248
           GA+VVYSKY GTE+E +GS HLI+KEDDI+GILETDD KDL+PLNDR+LIKVAE E KT+
Sbjct: 123 GAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTS 182

Query: 249 GGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGSD 308
           GGLLL E+SKEKPS GTV+A GPG L+E+G R PL +  G+  +YSKYAGN+FKG DGSD
Sbjct: 183 GGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSD 242

Query: 309 YIALRASD 317
           Y+ LR SD
Sbjct: 243 YMVLRVSD 249

[Close]

BLAST of Carg12940 vs. Swiss-Prot
Match: sp|B2A5V2|CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) OX=457570 GN=groS PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-23
Identity = 54/94 (57.45%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 130 SIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGN-TKVEASVKT 189
           ++KPLGDR+++KI EAEEKT+ GI+LP  A+ KPQ GEVVAVG GKT+ + +KVE  VK 
Sbjct: 2   NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKA 61

Query: 190 GAQVVYSKYAGTELEFNGSKHLILKEDDIVGILE 223
           G +VVYSK+AG E+E +G ++LI+++DDI+ ++E
Sbjct: 62  GDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95

[Close]

BLAST of Carg12940 vs. Swiss-Prot
Match: sp|Q60023|CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii OX=29323 GN=groS PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.7e-23
Identity = 53/92 (57.61%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 131 IKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGA 190
           +KPLGDRV+VK+ +AEE T GG++LP TA+ KPQ GEVVAVG G+ I   KVE  VK G 
Sbjct: 3   LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGD 62

Query: 191 QVVYSKYAGTELEFNGSKHLILKEDDIVGILE 223
           +V++SKYAGTE++ +G ++L+L+E DI+ I+E
Sbjct: 63  RVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

[Close]

BLAST of Carg12940 vs. Swiss-Prot
Match: sp|B0KBR4|CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=groS PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.7e-23
Identity = 53/92 (57.61%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 131 IKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGA 190
           +KPLGDRV+VK+ +AEE T GG++LP TA+ KPQ GEVVAVG G+ I   KVE  VK G 
Sbjct: 3   LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGD 62

Query: 191 QVVYSKYAGTELEFNGSKHLILKEDDIVGILE 223
           +V++SKYAGTE++ +G ++L+L+E DI+ I+E
Sbjct: 63  RVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

[Close]

BLAST of Carg12940 vs. TrEMBL
Match: tr|A0A1S3BPU5|A0A1S3BPU5_CUCME (20 kDa chaperonin, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492392 PE=3 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.0e-117
Identity = 227/250 (90.80%), Postives = 239/250 (95.60%), Query Frame = 0


Query: 68  MATAQLAGSLISARN-LPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAP 127
           MA AQ  GSLIS+RN LPSF+GLRPS+VKFSPS   VRVGG + RS+TGLVVRAATVVAP
Sbjct: 1   MAAAQFTGSLISSRNLLPSFNGLRPSSVKFSPSANHVRVGGLANRSFTGLVVRAATVVAP 60

Query: 128 KYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASV 187
           KYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQ+KPQGGEVVAVGEGKTIGNTKVEASV
Sbjct: 61  KYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQTKPQGGEVVAVGEGKTIGNTKVEASV 120

Query: 188 KTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEK 247
           KTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEK
Sbjct: 121 KTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEK 180

Query: 248 TAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDG 307
           TAGGLLLTEA+KEKPSIGTVIAVGPGHL+E+G RKPL++AVG+N MYSKYAGNEFKGKDG
Sbjct: 181 TAGGLLLTEATKEKPSIGTVIAVGPGHLDEEGNRKPLTVAVGNNVMYSKYAGNEFKGKDG 240

Query: 308 SDYIALRASD 317
           SDYIALRASD
Sbjct: 241 SDYIALRASD 250

[Close]

BLAST of Carg12940 vs. TrEMBL
Match: tr|A0A0A0LZM6|A0A0A0LZM6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G597740 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 6.6e-117
Identity = 225/250 (90.00%), Postives = 238/250 (95.20%), Query Frame = 0


Query: 68  MATAQLAGSLISARN-LPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAP 127
           MA A   GSLIS+RN LPSF+GLRPS+VKFSPSVA  RVGG + RS+TGLVVRAATVVAP
Sbjct: 1   MAAAHFTGSLISSRNLLPSFNGLRPSSVKFSPSVAHARVGGLANRSFTGLVVRAATVVAP 60

Query: 128 KYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASV 187
           KYTSIKPLGDRVLVKIKEAEEKTDGGILLP+TAQ++PQGGEVVAVGEGKTIGNTKVEASV
Sbjct: 61  KYTSIKPLGDRVLVKIKEAEEKTDGGILLPSTAQTRPQGGEVVAVGEGKTIGNTKVEASV 120

Query: 188 KTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEK 247
           KTGAQVVYSKYAGTELEFNGS HLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEK
Sbjct: 121 KTGAQVVYSKYAGTELEFNGSNHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEK 180

Query: 248 TAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDG 307
           TAGGLLLTE SKEKPSIGTVIAVGPGHL+E+GKRKPL++AVG+N MYSKYAGNEFKGKDG
Sbjct: 181 TAGGLLLTEGSKEKPSIGTVIAVGPGHLDEEGKRKPLTVAVGNNVMYSKYAGNEFKGKDG 240

Query: 308 SDYIALRASD 317
           SDYIALRASD
Sbjct: 241 SDYIALRASD 250

[Close]

BLAST of Carg12940 vs. TrEMBL
Match: tr|A0A2N9EFX6|A0A2N9EFX6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1462 PE=3 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 4.4e-105
Identity = 203/250 (81.20%), Postives = 223/250 (89.20%), Query Frame = 0


Query: 68  MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVG-GRSKRSYTGLVVRAATVVAP 127
           MATAQL  S IS RNLPSF GLRPSA+K  PSV   RVG G S+RS+ G+VV+AATVV P
Sbjct: 1   MATAQLTASSISTRNLPSFQGLRPSALKVGPSVGYCRVGNGLSQRSFQGMVVKAATVVTP 60

Query: 128 KYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASV 187
           KYTSIKPLGDRVLVKIK AEEKTDGGILLPTTAQSKPQGGEVVA+GEGKT+G +KV+ SV
Sbjct: 61  KYTSIKPLGDRVLVKIKTAEEKTDGGILLPTTAQSKPQGGEVVAIGEGKTVGKSKVDISV 120

Query: 188 KTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEK 247
           K G QVVYSKYAGTELEFNGSKHLILK+DDIVGILETDD KDL+PLNDRVLI+VAEAE+K
Sbjct: 121 KNGTQVVYSKYAGTELEFNGSKHLILKDDDIVGILETDDVKDLKPLNDRVLIQVAEAEQK 180

Query: 248 TAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDG 307
           TAGGLLLTEA+KEKPSIGTVIAVGPG ++E+G RKPLS+  G+  MYSKYAGN+FKGKDG
Sbjct: 181 TAGGLLLTEAAKEKPSIGTVIAVGPGPVDEEGNRKPLSVTPGNTVMYSKYAGNDFKGKDG 240

Query: 308 SDYIALRASD 317
            DYIALRASD
Sbjct: 241 YDYIALRASD 250

[Close]

BLAST of Carg12940 vs. TrEMBL
Match: tr|A0A2P4IMG7|A0A2P4IMG7_QUESU (20 kDa chaperonin, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_58478 PE=3 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 9.9e-105
Identity = 204/251 (81.27%), Postives = 223/251 (88.84%), Query Frame = 0


Query: 67  EMATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVGG-RSKRSYTGLVVRAATVVA 126
           EMATAQL  S IS RNLPSF GLRPS VK  PSV   RVG   S+R++ GLVV+AATVVA
Sbjct: 30  EMATAQLTASSISTRNLPSFPGLRPSIVKVGPSVGHCRVGSVLSQRAFRGLVVKAATVVA 89

Query: 127 PKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEAS 186
           PKYTSIKPLGDRVLVKIK AEEKTDGGILLPTTAQ+KPQGGEVVA+GEGKT+G +KV+ S
Sbjct: 90  PKYTSIKPLGDRVLVKIKTAEEKTDGGILLPTTAQTKPQGGEVVAIGEGKTVGKSKVDIS 149

Query: 187 VKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEE 246
           VKTG QVVYSKYAGTEL+FNGSKHLILK+DDIVGILETDD KDL+PLNDRVLIKVAEAE+
Sbjct: 150 VKTGTQVVYSKYAGTELDFNGSKHLILKDDDIVGILETDDVKDLKPLNDRVLIKVAEAEQ 209

Query: 247 KTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKD 306
           KTAGGLLLTEA+KEKPSIGTVIAVGPG L+E+G RKPLS+  G   M+SKYAGN+FKGKD
Sbjct: 210 KTAGGLLLTEAAKEKPSIGTVIAVGPGPLDEEGNRKPLSLTQGSTVMFSKYAGNDFKGKD 269

Query: 307 GSDYIALRASD 317
           G DYIALRASD
Sbjct: 270 GFDYIALRASD 280

[Close]

BLAST of Carg12940 vs. TrEMBL
Match: tr|A0A2N9I5C9|A0A2N9I5C9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47490 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.4e-103
Identity = 204/250 (81.60%), Postives = 221/250 (88.40%), Query Frame = 0


Query: 68  MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVG-GRSKRSYTGLVVRAATVVAP 127
           MATAQL  S IS RNLPSF GLR SAVK  PSV  +RVG G S+R+  GLVV+AATVV P
Sbjct: 1   MATAQLTASSISTRNLPSFQGLRSSAVKVGPSVGHLRVGSGLSQRAVRGLVVKAATVVTP 60

Query: 128 KYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASV 187
           KYTSIKPLGDRVLVKIK AEEKT GGILLPTTAQ+KPQGGEVVA+GEGKT+G +KV+ SV
Sbjct: 61  KYTSIKPLGDRVLVKIKTAEEKTGGGILLPTTAQTKPQGGEVVAIGEGKTVGKSKVDISV 120

Query: 188 KTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEK 247
           +TG QVVYSKYAGTELEFNGSKHLILK+DDIVGILETDD +DL+PLNDRVLIKVAEAEEK
Sbjct: 121 QTGTQVVYSKYAGTELEFNGSKHLILKDDDIVGILETDDVQDLKPLNDRVLIKVAEAEEK 180

Query: 248 TAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDG 307
           TAGGLLLTEA+KEKPSIGTVIAVGPG L+E+G RKPLSIA G   MYSKYAGN+FKGKDG
Sbjct: 181 TAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGSTVMYSKYAGNDFKGKDG 240

Query: 308 SDYIALRASD 317
            DYIALR SD
Sbjct: 241 FDYIALRVSD 250

The following BLAST results are available for this feature:

BLAST of Carg12940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961221.1	4.3e-128	99.20	20 kDa chaperonin, chloroplastic-like [Cucurbita moschata] >XP_022961222.1 20 kD...	[more]
XP_023516844.1	4.3e-128	99.20	20 kDa chaperonin, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023516845...	[more]
XP_022988297.1	2.8e-127	98.80	20 kDa chaperonin, chloroplastic-like [Cucurbita maxima] >XP_022988298.1 20 kDa ...	[more]
XP_023518874.1	1.3e-119	91.97	20 kDa chaperonin, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022966439.1	1.6e-119	91.57	20 kDa chaperonin, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Carg12940 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20720.1	1.9e-93	72.51	chaperonin 20	[more]
AT1G14980.1	1.6e-07	40.79	chaperonin 10	[more]
AT3G60210.1	8.7e-06	34.38	GroES-like family protein	[more]
AT2G44650.1	4.3e-05	29.90	chloroplast chaperonin 10	[more]

BLAST of Carg12940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65282\|CH20_ARATH	3.4e-92	72.51	20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 S...	[more]
sp\|Q02073\|CH10C_SPIOL	3.3e-79	62.50	20 kDa chaperonin, chloroplastic OS=Spinacia oleracea OX=3562 GN=CPN21 PE=2 SV=1	[more]
sp\|B2A5V2\|CH10_NATTJ	1.5e-23	57.45	10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 180...	[more]
sp\|Q60023\|CH10_THEBR	5.7e-23	57.61	10 kDa chaperonin OS=Thermoanaerobacter brockii OX=29323 GN=groS PE=1 SV=1	[more]
sp\|B0KBR4\|CH10_THEP3	5.7e-23	57.61	10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39...	[more]

BLAST of Carg12940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPU5\|A0A1S3BPU5_CUCME	1.0e-117	90.80	20 kDa chaperonin, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492392 PE=3 SV...	[more]
tr\|A0A0A0LZM6\|A0A0A0LZM6_CUCSA	6.6e-117	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G597740 PE=3 SV=1	[more]
tr\|A0A2N9EFX6\|A0A2N9EFX6_FAGSY	4.4e-105	81.20	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1462 PE=3 SV=1	[more]
tr\|A0A2P4IMG7\|A0A2P4IMG7_QUESU	9.9e-105	81.27	20 kDa chaperonin, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_58478 PE=3 S...	[more]
tr\|A0A2N9I5C9\|A0A2N9I5C9_FAGSY	1.4e-103	81.60	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47490 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **INTERPRO**
Term	Definition
IPR011032	GroES-like_sf
IPR018369	Chaprnonin_Cpn10_CS
IPR037124	Chaperonin_GroES_sf
IPR020818	Chaperonin_GroES

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12940-RA	Carg12940-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020818	GroES chaperonin family	PRINTS	PR00297	CHAPERONIN10	coord: 131..146 score: 56.32 coord: 187..199 score: 44.47 coord: 208..221 score: 37.05 coord: 153..174 score: 53.6
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 130..221 e-value: 1.2E-41 score: 154.4 coord: 228..316 e-value: 1.9E-31 score: 120.5
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 229..316 e-value: 1.6E-25 score: 88.9 coord: 131..220 e-value: 2.4E-29 score: 101.1
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 68..316
IPR020818	GroES chaperonin family	HAMAP	MF_00580	CH10	coord: 130..222 score: 23.099
IPR020818	GroES chaperonin family	CDD	cd00320	cpn10	coord: 229..316 e-value: 5.17652E-31 score: 112.215
IPR020818	GroES chaperonin family	CDD	cd00320	cpn10	coord: 130..221 e-value: 9.98613E-36 score: 124.927
IPR037124	GroES chaperonin superfamily	GENE3D	G3DSA:2.30.33.40		coord: 224..316 e-value: 4.4E-32 score: 112.1 coord: 124..223 e-value: 1.8E-32 score: 113.3
None	No IPR available	PANTHER	PTHR10772:SF23	SUBFAMILY NOT NAMED	coord: 68..316
IPR018369	Chaperonin GroES, conserved site	PROSITE	PS00681	CHAPERONINS_CPN10	coord: 229..253
IPR018369	Chaperonin GroES, conserved site	PROSITE	PS00681	CHAPERONINS_CPN10	coord: 131..155
IPR011032	GroES-like superfamily	SUPERFAMILY	SSF50129	GroES-like	coord: 129..222
IPR011032	GroES-like superfamily	SUPERFAMILY	SSF50129	GroES-like	coord: 228..316

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12940	Cla011138	Watermelon (97103) v1	carwmB0090
Carg12940	MELO3C015544	Melon (DHL92) v3.5.1	carmeB0096
Carg12940	CSPI01G28940	Wild cucumber (PI 183967)	carcpiB0106
Carg12940	Cucsa.141990	Cucumber (Gy14) v1	carcgyB0112
Carg12940	CmoCh10G008130	Cucurbita moschata (Rifu)	carcmoB0128
Carg12940	Lsi06G003600	Bottle gourd (USVL1VR-Ls)	carlsiB086
Carg12940	Cp4.1LG18g02960	Cucurbita pepo (Zucchini)	carcpeB0138
Carg12940	CsGy1G028160	Cucumber (Gy14) v2	carcgybB0101
Carg12940	MELO3C015544.2	Melon (DHL92) v3.6.1	carmedB0098
Carg12940	CsaV3_1G041320	Cucumber (Chinese Long) v3	carcucB0109
Carg12940	Bhi02G001486	Wax gourd	carwgoB0110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12940	Silver-seed gourd	carcarB103
Carg12940	Silver-seed gourd	carcarB108
Carg12940	Cucurbita maxima (Rimu)	carcmaB0119
Carg12940	Cucurbita maxima (Rimu)	carcmaB0120
Carg12940	Cucurbita maxima (Rimu)	carcmaB0121
Carg12940	Cucurbita moschata (Rifu)	carcmoB0129
Carg12940	Cucurbita moschata (Rifu)	carcmoB0130
Carg12940	Cucurbita pepo (Zucchini)	carcpeB0141
Carg12940	Cucurbita pepo (Zucchini)	carcpeB0143
Carg12940	Cucumber (Chinese Long) v2	carcuB0101
Carg12940	Watermelon (Charleston Gray)	carwcgB0094
Carg12940	Watermelon (97103) v2	carwmbB0094