Carg05075-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05075-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytochrome b561 and DOMON domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_060 : 1216324 .. 1216515 (+)
Sequence length	192

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGAGCCCAGGCCCTCATCACCACCCTCTCCGTCCATACCTTCGGCATTTCCTCCTACTCTTCCGTCCGCCCCTCACCGCTCTCCTTCCCCATCTGGGACATCGCCGCTGAATTCGCTGACGAACGGCTCACAATCTTCGCTACTGTGGAAGTTCCAGCCAAGCCTAAGTCGCTGAACCAGGTCTAG

mRNA sequence

ATGTCTGGAGCCCAGGCCCTCATCACCACCCTCTCCGTCCATACCTTCGGCATTTCCTCCTACTCTTCCGTCCGCCCCTCACCGCTCTCCTTCCCCATCTGGGACATCGCCGCTGAATTCGCTGACGAACGGCTCACAATCTTCGCTACTGTGGAAGTTCCAGCCAAGCCTAAGTCGCTGAACCAGGTCTAG

Coding sequence (CDS)

ATGTCTGGAGCCCAGGCCCTCATCACCACCCTCTCCGTCCATACCTTCGGCATTTCCTCCTACTCTTCCGTCCGCCCCTCACCGCTCTCCTTCCCCATCTGGGACATCGCCGCTGAATTCGCTGACGAACGGCTCACAATCTTCGCTACTGTGGAAGTTCCAGCCAAGCCTAAGTCGCTGAACCAGGTCTAG

Protein sequence

MSGAQALITTLSVHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVPAKPKSLNQV

Homology

[Close]

BLAST of Carg05075-RA vs. NCBI nr
Match: XP_023004353.1 (auxin-induced in root cultures protein 12-like [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MSGAQALITTLS-----VHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVPA 60
           MSG+QALI TLS     V TF ++SYSSVRP+PLSFP+WDIAAEFAD+R+TIFATVEVPA
Sbjct: 87  MSGSQALIATLSADTPTVRTFDVASYSSVRPAPLSFPVWDIAAEFADKRITIFATVEVPA 146

Query: 61  KPKSLNQV 64
           K KS+N V
Sbjct: 147 KAKSVNHV 154

[Close]

BLAST of Carg05075-RA vs. NCBI nr
Match: XP_022959842.1 (auxin-induced in root cultures protein 12-like [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MSGAQALITTLS-----VHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVPA 60
           M+G+QALI TLS     V TF + SYSS+RP+PLSFP+WD+AAEFAD+R+TIFATVEVPA
Sbjct: 88  MAGSQALIATLSGDTPTVRTFDVVSYSSLRPAPLSFPVWDVAAEFADKRITIFATVEVPA 147

Query: 61  KPKSLNQV 64
           K KS+N V
Sbjct: 148 KAKSVNHV 155

[Close]

BLAST of Carg05075-RA vs. NCBI nr
Match: XP_023514479.1 (auxin-induced in root cultures protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 9.8e-16
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1   MSGAQALITTLS-----VHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVPA 60
           MSG+QALI TLS     V TF + SYSSVRP+PLSFP+W++AAEFAD+R+TIFATVEVPA
Sbjct: 88  MSGSQALIATLSGDTPTVRTFDVVSYSSVRPAPLSFPVWNVAAEFADKRITIFATVEVPA 147

Query: 61  KPKSLNQV 64
           K  S+N V
Sbjct: 148 KAMSVNHV 155

[Close]

BLAST of Carg05075-RA vs. NCBI nr
Match: XP_022991982.1 (auxin-induced in root cultures protein 12-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-12
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   MSGAQALITTLS-----VHTFGISSYSSVRPSP-LSFPIWDIAAEFADERLTIFATVEVP 60
           M+GAQAL+ ++S     V TF ISSYSSV PSP LSF +W +AAEF+D R TIFATV+VP
Sbjct: 86  MAGAQALVASVSGKSPTVRTFNISSYSSVVPSPKLSFLVWGLAAEFSDGRFTIFATVKVP 145

Query: 61  AKPKSLNQV 64
            K KSLNQV
Sbjct: 146 PKTKSLNQV 154

[Close]

BLAST of Carg05075-RA vs. NCBI nr
Match: XP_022988993.1 (auxin-induced in root cultures protein 12-like [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   MSGAQALIT-----TLSVHTFGISSYSSVRPS-PLSFPIWDIAAEFADERLTIFATVEVP 60
           M GAQALI      T SV TF ISSYS V PS  LSFP+WD+AAE +DE+ TIFATV+VP
Sbjct: 86  MIGAQALIASQSGGTPSVRTFNISSYSVVLPSHSLSFPVWDVAAECSDEQFTIFATVKVP 145

Query: 61  AKPKSLNQV 64
            K KSLNQV
Sbjct: 146 EKAKSLNQV 154

[Close]

BLAST of Carg05075-RA vs. TAIR10
Match: AT3G07390.1 (auxin-responsive family protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.0e-06
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 1   MSGAQALITTLS-------VHTFGISSYSSVRPSPLSFPIWDIAAE-FADERLTIFATVE 60
           M+G+QA +   S       V T+ ISSYSS+    L+F  W++ AE  +  R+ IF TV+
Sbjct: 112 MAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVK 171

Query: 61  VPAKPKSLNQV 64
           VPA   S+NQV
Sbjct: 172 VPAGADSVNQV 182

[Close]

BLAST of Carg05075-RA vs. TAIR10
Match: AT4G12980.1 (Auxin-responsive family protein)

HSP 1 Score: 47.4 bits (111), Expect = 3.9e-06
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 1   MSGAQALITT-------LSVHTFGISSYSSVRPSPLSFPIWDIAAEFADE---RLTIFAT 56
           M+G+QAL+ +        SV T  I SYSS+ PS LSF +WD+ AE A      L IFA 
Sbjct: 90  MAGSQALVASKDPSTGVASVTTLNIVSYSSLVPSKLSFDVWDVKAEEAANDGGALRIFAK 149

[Close]

BLAST of Carg05075-RA vs. TAIR10
Match: AT3G25290.1 (Auxin-responsive family protein)

HSP 1 Score: 42.7 bits (99), Expect = 9.5e-05
Identity = 29/65 (44.62%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 1   MSGAQALIT-------TLSVHTFGISSYSSVRPSPLSFPIWDIAAEFADE---RLTIFAT 56
           M G+Q L+           V T  ISSYSS+ PS L+F +WD+ AE A      L IFA 
Sbjct: 89  MVGSQTLVAYKDPGNGVAVVKTLNISSYSSLIPSKLAFDVWDMKAEEAARDGGSLRIFAR 148

[Close]

BLAST of Carg05075-RA vs. Swiss-Prot
Match: sp|Q94BT2|AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana OX=3702 GN=AIR12 PE=1 SV=3)

HSP 1 Score: 47.8 bits (112), Expect = 5.3e-05
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 1   MSGAQALITTLS-------VHTFGISSYSSVRPSPLSFPIWDIAAE-FADERLTIFATVE 60
           M+G+QA +   S       V T+ ISSYSS+    L+F  W++ AE  +  R+ IF TV+
Sbjct: 91  MAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVK 150

Query: 61  VPAKPKSLNQV 64
           VPA   S+NQV
Sbjct: 151 VPAGADSVNQV 161

[Close]

BLAST of Carg05075-RA vs. Swiss-Prot
Match: sp|Q9SV71|B561O_ARATH (Cytochrome b561 and DOMON domain-containing protein At4g12980 OS=Arabidopsis thaliana OX=3702 GN=At4g12980 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.0e-05
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 1   MSGAQALITT-------LSVHTFGISSYSSVRPSPLSFPIWDIAAEFADE---RLTIFAT 56
           M+G+QAL+ +        SV T  I SYSS+ PS LSF +WD+ AE A      L IFA 
Sbjct: 90  MAGSQALVASKDPSTGVASVTTLNIVSYSSLVPSKLSFDVWDVKAEEAANDGGALRIFAK 149

[Close]

BLAST of Carg05075-RA vs. TrEMBL
Match: tr|A0A1S4E1W3|A0A1S4E1W3_CUCME (auxin-induced in root cultures protein 12 OS=Cucumis melo OX=3656 GN=LOC107991583 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.1e-10
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MSGAQALIT-----TLSVHTFGISSYSSVRPSP-LSFPIWDIAAEFADERLTIFATVEVP 60
           M+G+QA +      +L+V TF I+SY+SVRPSP LSFP WD+A+E +D+   IF TV+VP
Sbjct: 86  MAGSQAFLAAFFAKSLTVRTFNITSYNSVRPSPTLSFPFWDLASESSDDLFAIFVTVKVP 145

Query: 61  AKPKSLNQV 64
            K  SLNQV
Sbjct: 146 EKASSLNQV 154

[Close]

BLAST of Carg05075-RA vs. TrEMBL
Match: tr|A0A0A0K5A4|A0A0A0K5A4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368155 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MSGAQALIT-----TLSVHTFGISSYSSVRPSP-LSFPIWDIAAEFADERLTIFATVEVP 60
           M+G+QA +      +L+V TF I+SY+SVRPSP LSFP WD+A++ +D+   IF TV+VP
Sbjct: 86  MAGSQAFLAAFFTKSLTVRTFNITSYNSVRPSPTLSFPFWDLASQSSDDLFAIFVTVKVP 145

Query: 61  AKPKSLNQV 64
            K  SLNQV
Sbjct: 146 EKSSSLNQV 154

[Close]

BLAST of Carg05075-RA vs. TrEMBL
Match: tr|A0A2P5B2Q5|A0A2P5B2Q5_9ROSA (DOMON domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_334320 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   MSGAQALIT------TLSVHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVP 60
           M G+QAL+       +++V T+ ISSY++V PS +SF +WD++A +A  ++TIFATV+VP
Sbjct: 89  MIGSQALVAVRRSNGSVTVQTYNISSYAAVVPSSISFEVWDLSATYAGGQITIFATVKVP 148

Query: 61  AKPKSLNQV 64
            K +SLNQV
Sbjct: 149 EKAESLNQV 157

[Close]

BLAST of Carg05075-RA vs. TrEMBL
Match: tr|M5VKB3|M5VKB3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G192700 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 1   MSGAQALIT------TLSVHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVP 60
           M+GAQ L+         +V+T  ISSYSS+ P  LSF +WD++AEF+++  TIFATV+VP
Sbjct: 92  MAGAQTLLAYKTENGAPAVNTLNISSYSSIVPGKLSFEVWDVSAEFSNDTFTIFATVKVP 151

Query: 61  AKPKSLNQV 64
               S+NQV
Sbjct: 152 KDAASVNQV 160

[Close]

BLAST of Carg05075-RA vs. TrEMBL
Match: tr|M5VVB4|M5VVB4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa023151mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1   MSGAQALIT------TLSVHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVP 60
           M+GAQ L+         +V TF ISSY+SV P  LSF IWDI++EF++    IFA V+VP
Sbjct: 91  MAGAQILLAYNTDGGIPTVKTFNISSYTSVVPGKLSFDIWDISSEFSNGTFKIFAAVKVP 150

Query: 61  AKPKSLNQV 64
              KS+NQV
Sbjct: 151 KNKKSVNQV 159

The following BLAST results are available for this feature:

BLAST of Carg05075-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004353.1	1.8e-17	73.53	auxin-induced in root cultures protein 12-like [Cucurbita maxima]	[more]
XP_022959842.1	2.6e-16	69.12	auxin-induced in root cultures protein 12-like [Cucurbita moschata]	[more]
XP_023514479.1	9.8e-16	69.12	auxin-induced in root cultures protein 12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991982.1	6.6e-12	65.22	auxin-induced in root cultures protein 12-like [Cucurbita maxima]	[more]
XP_022988993.1	1.1e-11	66.67	auxin-induced in root cultures protein 12-like [Cucurbita maxima]	[more]

BLAST of Carg05075-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07390.1	3.0e-06	42.25	auxin-responsive family protein	[more]
AT4G12980.1	3.9e-06	47.69	Auxin-responsive family protein	[more]
AT3G25290.1	9.5e-05	44.62	Auxin-responsive family protein	[more]

BLAST of Carg05075-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94BT2\|AIR12_ARATH	5.3e-05	42.25	Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana OX=3702 GN=AIR...	[more]
sp\|Q9SV71\|B561O_ARATH	7.0e-05	47.69	Cytochrome b561 and DOMON domain-containing protein At4g12980 OS=Arabidopsis tha...	[more]

BLAST of Carg05075-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E1W3\|A0A1S4E1W3_CUCME	9.1e-10	55.07	auxin-induced in root cultures protein 12 OS=Cucumis melo OX=3656 GN=LOC10799158...	[more]
tr\|A0A0A0K5A4\|A0A0A0K5A4_CUCSA	2.0e-09	53.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368155 PE=4 SV=1	[more]
tr\|A0A2P5B2Q5\|A0A2P5B2Q5_9ROSA	1.3e-08	49.28	DOMON domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_33432...	[more]
tr\|M5VKB3\|M5VKB3_PRUPE	5.0e-08	49.28	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G192700 PE=4 SV=1	[more]
tr\|M5VVB4\|M5VVB4_PRUPE	5.5e-07	50.72	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa023151m...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005018	DOMON_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05075	Carg05075	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05075-RA.exon.1	Carg05075-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05075-RA.CDS.1	Carg05075-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05075-RA	Carg05075-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005018	DOMON domain	PFAM	PF04526	DUF568	coord: 1..63 e-value: 1.3E-9 score: 38.5