Carg08337-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGGTAGACCTTTGGTATCAGTTCAGGGAAGCCCAGCAAAGTGGGGTTTTGGGCCCGGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACTCATGGGTCCGTTTTCCTTTGTCCCTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCAATGGGACAATAATTCAATTAGACTATGGACGTAACGAAGCAAGGTTTTACTTTTTTTCAATTTTTCATGCATTTCTTCAACTTTCGGAACTCGGCTCTAGAGCACGCTATCAATTACAGTGCCTCCGTGCTAAAAACTCGAGAAGATCTAAGATTGAACTCCACAGGTCGCCATTTAAATGCCGTGTTTCACAAGTTTCGACTACAGAAGGTTAAAAACACATTTTGATGATTCAAAATCTTTCCAAAACATGTTTTTAATCATTCAGAATCAAATATGGTAAGACATATCCGGAAGTGGTTTTGATCTAAGTCGAAAGTGGTCATAACCGTTTTCAAATGCAGTTGAAAGGGACCTTACTTCAATACTATGAGTCTATATGTATTACACATCCTTTTCAATAGTGACAGTTGGAAAGTGTGACGACTTTAACCTCCAAAAAATCAGTTCTCTCAACTTCCCCAAATGAGATAGATACCTGAATTCTAGGGGCACTTGAGACATTTCACAGCTAGCCACGCTTCGAAACCGAGACCTCGTCTTCTCAGAACGAGTGGTCACAGGGAAGGGGAGAAAAAGATAAGAGGGTAAATTAAATAATTGTGTGTGTGTGTGTGTGTTTTTGGCTTATTTTGTTACCACCACTAGATTCTGTCTGTGAAGGGCGTGGGGTTAGACATTGTTGAAGAGAGGGCAAGTGGGTAATTTAAAACAGGAAAAAACTGAGCATCCAAGTGTTTGGTTAACATCATAGGATGGACAACCAAACATCATATGATTATTAAAACACAATGTTGTCGTCTTTTATGACCACAAACTGAAGCATCAATGTCACTCAGTTGCATGAATGCCTACCTACTTATGGATTGACTTTCCTCTTTTTTTTAGCCTTTTACTTTTGCCGTGAATTCCACTTAATCATCAATACCCTCTTCAATTTTTCCTTTGTATGAATTACGAATATAGATATATACAGATGTATGGGGTCGAGTAATTTCTTAGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGGTATGCAATGAGCAGAAGTCTTGATAAAGAGCCCTGGTCTCGAAAGAGATGCAGCGTTAAGAGCTATATCGTAGAAGTGGTATACTCTTAAATTTCTATTAGTTTTTTTCGTTAAATGTTTCATCCTGATTCATATAATAAACATTTGTATGGATGTCCCATCTTCTTCTCCATCGACAATAAAGACTCGCAACAACAAGGACCATTTTCGACAACTATGAGCACCCTCAAAGTGACCCACGTACAACGTTAGGCTACGGTAACCCACGCCAAATAAACTCACAAACCAGCGTTGAATAGCGTCTGGTTCGAATAAACTCCAAGATCTTTCTCCTATCTCAACACTACAAATTCAAAAGCTCCAACAAGACCCACTAGAAAATCAAAGGGTTTGGAGACATCTAGACATTGAAAGGTCCTCCCCTCCAAGAACAATTTTCAAAAGAAACATGTTTTTACCCCATTGTTCGAAAAGACAACCAAAAAAAGAAGAACAAAAAACAAAAGACTGTTCTTTGTCTCAGTGTTTTTTTGCAATAAATTAAGTGACAGTTTATATGAACATTTATCAGAGGAGAAATAACAGTTAAGAAGGGCCAGCCATAAGTGAAATGCAGTGCAAGAAACTTGCGAAGTAAGAAGCTAAGATATCCGACATCATATAACGACAGGGAAATTACAGGACCCTTAATAAGATTACAAGCAACCATGTCCCCTCTTCCCTCTGATATTTCCACCCTCATTGCAGAGATACCCACATGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACTCATGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGAGATACCCACATGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACTCATGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGAGATACCCACATGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA MKEPTPSTVSLRLVRLPSSVEELIDSPELLKERRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPIHSWSSTGTCGFKGPRTLFAAQTATGNAIRAKAYQEIPTWKKQAQRKKKTWGGDWFGSEIEIE
BLAST of Carg08337-RA vs. NCBI nr
Match: YP_009447483.1 (ribosomal protein S11 (chloroplast) [Cucurbita maxima] >YP_009447568.1 ribosomal protein S11 (chloroplast) [Cucurbita moschata] >YP_009505113.1 ribosomal protein S11 (chloroplast) [Cucurbita pepo] >ALO21755.1 ribosomal protein S11 (plastid) [Cucurbita argyrosperma] >ALO21816.1 ribosomal protein S11 (plastid) [Cucurbita argyrosperma var. palmeri] >ALO21835.1 ribosomal protein S11 (plastid) [Cucurbita argyrosperma subsp. sororia] >ALO22045.1 ribosomal protein S11 (plastid) [Cucurbita ecuadorensis] >ALO22279.1 ribosomal protein S11 (plastid) [Cucurbita lundelliana] >ALO22303.1 ribosomal protein S11 (plastid) [Cucurbita maxima subsp. andreana] >ALO22349.1 ribosomal protein S11 (plastid) [Cucurbita moschata] >ALO22455.1 ribosomal protein S11 (plastid) [Cucurbita okeechobeensis] >ALO22482.1 ribosomal protein S11 (plastid) [Cucurbita okeechobeensis subsp. martinezii] >ALO22581.1 ribosomal protein S11 (plastid) [Cucurbita pepo subsp. fraterna] >ALO22640.1 ribosomal protein S11 (plastid) [Cucurbita pepo subsp. ovifera] >ALO22727.1 ribosomal protein S11 (plastid) [Cucurbita pepo var. ozarkana] >ALO22773.1 ribosomal protein S11 (plastid) [Cucurbita pepo subsp. pepo] >ALO22847.1 ribosomal protein S11 (plastid) [Cucurbita pepo var. texana] >ATY69875.1 ribosomal protein S11 (chloroplast) [Cucurbita maxima] >ATY69958.1 ribosomal protein S11 (chloroplast) [Cucurbita moschata] >AWX90352.1 ribosomal protein S11 (chloroplast) [Cucurbita pepo]) HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04 Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0
BLAST of Carg08337-RA vs. NCBI nr
Match: ALO21945.1 (ribosomal protein S11 (plastid) [Cucurbita cordata] >ALO21975.1 ribosomal protein S11 (plastid) [Cucurbita digitata] >ALO22089.1 ribosomal protein S11 (plastid) [Cucurbita ficifolia] >ALO22168.1 ribosomal protein S11 (plastid) [Cucurbita foetidissima] >ALO22872.1 ribosomal protein S11 (plastid) [Cucurbita pedatifolia]) HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04 Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0
BLAST of Carg08337-RA vs. TAIR10
Match: ATCG00750.1 (ribosomal protein S11) HSP 1 Score: 47.8 bits (112), Expect = 6.3e-06 Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 0
BLAST of Carg08337-RA vs. Swiss-Prot
Match: sp|A4QJE8|RR11_AETCO (30S ribosomal protein S11, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps11 PE=3 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05 Identity = 27/37 (72.97%), Postives = 27/37 (72.97%), Query Frame = 0
BLAST of Carg08337-RA vs. Swiss-Prot
Match: sp|A4QJN2|RR11_AETGR (30S ribosomal protein S11, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rps11 PE=3 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05 Identity = 27/37 (72.97%), Postives = 27/37 (72.97%), Query Frame = 0
BLAST of Carg08337-RA vs. Swiss-Prot
Match: sp|A4QKD8|RR11_BARVE (30S ribosomal protein S11, chloroplastic OS=Barbarea verna OX=50458 GN=rps11 PE=3 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05 Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0
BLAST of Carg08337-RA vs. Swiss-Prot
Match: sp|Q09ME4|RR11_CITSI (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis OX=2711 GN=rps11 PE=3 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05 Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of Carg08337-RA vs. Swiss-Prot
Match: sp|A0ZZ68|RR11_GOSBA (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05 Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0
BLAST of Carg08337-RA vs. TrEMBL
Match: tr|A0A0S2IGL1|A0A0S2IGL1_CUCMO (Ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=rps11 PE=3 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 5.5e-04 Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0
BLAST of Carg08337-RA vs. TrEMBL
Match: tr|A0A0S2IF33|A0A0S2IF33_9ROSI (Ribosomal protein S11 OS=Cucurbita foetidissima OX=184136 GN=rps11 PE=3 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 5.5e-04 Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0
BLAST of Carg08337-RA vs. TrEMBL
Match: tr|A0A0S2IE96|A0A0S2IE96_9ROSI (Ribosomal protein S11 OS=Cucurbita cordata OX=1094862 GN=rps11 PE=3 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 5.5e-04 Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0
BLAST of Carg08337-RA vs. TrEMBL
Match: tr|A0A0S2IE59|A0A0S2IE59_9ROSI (Ribosomal protein S11 OS=Cucurbita argyrosperma subsp. sororia OX=37648 GN=rps11 PE=3 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 5.5e-04 Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0
BLAST of Carg08337-RA vs. TrEMBL
Match: tr|A0A0S2IFR8|A0A0S2IFR8_9ROSI (Ribosomal protein S11 OS=Cucurbita ecuadorensis OX=184135 GN=rps11 PE=3 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 5.5e-04 Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
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