Carg08337 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08337
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	30S ribosomal protein S11, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_015 : 923373 .. 925646 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGGTAGACCTTTGGTATCAGTTCAGGGAAGCCCAGCAAAGTGGGGTTTTGGGCCCGGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACTCATGGGTCCGTTTTCCTTTGTCCCTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCAATGGGACAATAATTCAATTAGACTATGGACGTAACGAAGCAAGGTTTTACTTTTTTTCAATTTTTCATGCATTTCTTCAACTTTCGGAACTCGGCTCTAGAGCACGCTATCAATTACAGTGCCTCCGTGCTAAAAACTCGAGAAGATCTAAGATTGAACTCCACAGGTCGCCATTTAAATGCCGTGTTTCACAAGTTTCGACTACAGAAGGTTAAAAACACATTTTGATGATTCAAAATCTTTCCAAAACATGTTTTTAATCATTCAGAATCAAATATGGTAAGACATATCCGGAAGTGGTTTTGATCTAAGTCGAAAGTGGTCATAACCGTTTTCAAATGCAGTTGAAAGGGACCTTACTTCAATACTATGAGTCTATATGTATTACACATCCTTTTCAATAGTGACAGTTGGAAAGTGTGACGACTTTAACCTCCAAAAAATCAGTTCTCTCAACTTCCCCAAATGAGATAGATACCTGAATTCTAGGGGCACTTGAGACATTTCACAGCTAGCCACGCTTCGAAACCGAGACCTCGTCTTCTCAGAACGAGTGGTCACAGGGAAGGGGAGAAAAAGATAAGAGGGTAAATTAAATAATTGTGTGTGTGTGTGTGTGTTTTTGGCTTATTTTGTTACCACCACTAGATTCTGTCTGTGAAGGGCGTGGGGTTAGACATTGTTGAAGAGAGGGCAAGTGGGTAATTTAAAACAGGAAAAAACTGAGCATCCAAGTGTTTGGTTAACATCATAGGATGGACAACCAAACATCATATGATTATTAAAACACAATGTTGTCGTCTTTTATGACCACAAACTGAAGCATCAATGTCACTCAGTTGCATGAATGCCTACCTACTTATGGATTGACTTTCCTCTTTTTTTTAGCCTTTTACTTTTGCCGTGAATTCCACTTAATCATCAATACCCTCTTCAATTTTTCCTTTGTATGAATTACGAATATAGATATATACAGATGTATGGGGTCGAGTAATTTCTTAGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGGTATGCAATGAGCAGAAGTCTTGATAAAGAGCCCTGGTCTCGAAAGAGATGCAGCGTTAAGAGCTATATCGTAGAAGTGGTATACTCTTAAATTTCTATTAGTTTTTTTCGTTAAATGTTTCATCCTGATTCATATAATAAACATTTGTATGGATGTCCCATCTTCTTCTCCATCGACAATAAAGACTCGCAACAACAAGGACCATTTTCGACAACTATGAGCACCCTCAAAGTGACCCACGTACAACGTTAGGCTACGGTAACCCACGCCAAATAAACTCACAAACCAGCGTTGAATAGCGTCTGGTTCGAATAAACTCCAAGATCTTTCTCCTATCTCAACACTACAAATTCAAAAGCTCCAACAAGACCCACTAGAAAATCAAAGGGTTTGGAGACATCTAGACATTGAAAGGTCCTCCCCTCCAAGAACAATTTTCAAAAGAAACATGTTTTTACCCCATTGTTCGAAAAGACAACCAAAAAAAGAAGAACAAAAAACAAAAGACTGTTCTTTGTCTCAGTGTTTTTTTGCAATAAATTAAGTGACAGTTTATATGAACATTTATCAGAGGAGAAATAACAGTTAAGAAGGGCCAGCCATAAGTGAAATGCAGTGCAAGAAACTTGCGAAGTAAGAAGCTAAGATATCCGACATCATATAACGACAGGGAAATTACAGGACCCTTAATAAGATTACAAGCAACCATGTCCCCTCTTCCCTCTGATATTTCCACCCTCATTGCAGAGATACCCACATGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA

mRNA sequence

ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACTCATGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGAGATACCCACATGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA

Coding sequence (CDS)

ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACTCATGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGAGATACCCACATGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA

Protein sequence

MKEPTPSTVSLRLVRLPSSVEELIDSPELLKERRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPIHSWSSTGTCGFKGPRTLFAAQTATGNAIRAKAYQEIPTWKKQAQRKKKTWGGDWFGSEIEIE

Homology

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BLAST of Carg08337 vs. NCBI nr
Match: YP_009447483.1 (ribosomal protein S11 (chloroplast) [Cucurbita maxima] >YP_009447568.1 ribosomal protein S11 (chloroplast) [Cucurbita moschata] >YP_009505113.1 ribosomal protein S11 (chloroplast) [Cucurbita pepo] >ALO21755.1 ribosomal protein S11 (plastid) [Cucurbita argyrosperma] >ALO21816.1 ribosomal protein S11 (plastid) [Cucurbita argyrosperma var. palmeri] >ALO21835.1 ribosomal protein S11 (plastid) [Cucurbita argyrosperma subsp. sororia] >ALO22045.1 ribosomal protein S11 (plastid) [Cucurbita ecuadorensis] >ALO22279.1 ribosomal protein S11 (plastid) [Cucurbita lundelliana] >ALO22303.1 ribosomal protein S11 (plastid) [Cucurbita maxima subsp. andreana] >ALO22349.1 ribosomal protein S11 (plastid) [Cucurbita moschata] >ALO22455.1 ribosomal protein S11 (plastid) [Cucurbita okeechobeensis] >ALO22482.1 ribosomal protein S11 (plastid) [Cucurbita okeechobeensis subsp. martinezii] >ALO22581.1 ribosomal protein S11 (plastid) [Cucurbita pepo subsp. fraterna] >ALO22640.1 ribosomal protein S11 (plastid) [Cucurbita pepo subsp. ovifera] >ALO22727.1 ribosomal protein S11 (plastid) [Cucurbita pepo var. ozarkana] >ALO22773.1 ribosomal protein S11 (plastid) [Cucurbita pepo subsp. pepo] >ALO22847.1 ribosomal protein S11 (plastid) [Cucurbita pepo var. texana] >ATY69875.1 ribosomal protein S11 (chloroplast) [Cucurbita maxima] >ATY69958.1 ribosomal protein S11 (chloroplast) [Cucurbita moschata] >AWX90352.1 ribosomal protein S11 (chloroplast) [Cucurbita pepo])

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04
Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ 107
           SWSS GTCGFKGPR  T FAAQTA GNAIRA A Q
Sbjct: 52  SWSSAGTCGFKGPRRGTPFAAQTAAGNAIRAVADQ 86

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BLAST of Carg08337 vs. NCBI nr
Match: ALO21945.1 (ribosomal protein S11 (plastid) [Cucurbita cordata] >ALO21975.1 ribosomal protein S11 (plastid) [Cucurbita digitata] >ALO22089.1 ribosomal protein S11 (plastid) [Cucurbita ficifolia] >ALO22168.1 ribosomal protein S11 (plastid) [Cucurbita foetidissima] >ALO22872.1 ribosomal protein S11 (plastid) [Cucurbita pedatifolia])

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04
Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ 107
           SWSS GTCGFKGPR  T FAAQTA GNAIRA A Q
Sbjct: 52  SWSSAGTCGFKGPRRGTPFAAQTAAGNAIRAVADQ 86

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BLAST of Carg08337 vs. TAIR10
Match: ATCG00750.1 (ribosomal protein S11)

HSP 1 Score: 47.8 bits (112), Expect = 6.3e-06
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA 103
           SWSS GTCGF+G R  T FAAQTA GNAIRA
Sbjct: 52  SWSSAGTCGFRGTRRGTPFAAQTAAGNAIRA 82

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BLAST of Carg08337 vs. Swiss-Prot
Match: sp|A4QJE8|RR11_AETCO (30S ribosomal protein S11, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps11 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05
Identity = 27/37 (72.97%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQEI 109
           SWSS GTCGFKG R  T FAAQTA GNAIRA   Q I
Sbjct: 52  SWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGI 88

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BLAST of Carg08337 vs. Swiss-Prot
Match: sp|A4QJN2|RR11_AETGR (30S ribosomal protein S11, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rps11 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05
Identity = 27/37 (72.97%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQEI 109
           SWSS GTCGFKG R  T FAAQTA GNAIRA   Q I
Sbjct: 52  SWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGI 88

[Close]

BLAST of Carg08337 vs. Swiss-Prot
Match: sp|A4QKD8|RR11_BARVE (30S ribosomal protein S11, chloroplastic OS=Barbarea verna OX=50458 GN=rps11 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA 103
           SWSS GTCGFKG R  T FAAQTA GNAIRA
Sbjct: 52  SWSSAGTCGFKGTRRGTPFAAQTAAGNAIRA 82

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BLAST of Carg08337 vs. Swiss-Prot
Match: sp|Q09ME4|RR11_CITSI (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis OX=2711 GN=rps11 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ 107
           SWSS GTCGF+G R  T FAAQTA GNAIRA A Q
Sbjct: 52  SWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVADQ 86

[Close]

BLAST of Carg08337 vs. Swiss-Prot
Match: sp|A0ZZ68|RR11_GOSBA (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA 103
           SWSS GTCGFKG R  T FAAQTA GNAIRA
Sbjct: 52  SWSSAGTCGFKGTRRGTPFAAQTAAGNAIRA 82

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BLAST of Carg08337 vs. TrEMBL
Match: tr|A0A0S2IGL1|A0A0S2IGL1_CUCMO (Ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=rps11 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.5e-04
Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ 107
           SWSS GTCGFKGPR  T FAAQTA GNAIRA A Q
Sbjct: 52  SWSSAGTCGFKGPRRGTPFAAQTAAGNAIRAVADQ 86

[Close]

BLAST of Carg08337 vs. TrEMBL
Match: tr|A0A0S2IF33|A0A0S2IF33_9ROSI (Ribosomal protein S11 OS=Cucurbita foetidissima OX=184136 GN=rps11 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.5e-04
Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ 107
           SWSS GTCGFKGPR  T FAAQTA GNAIRA A Q
Sbjct: 52  SWSSAGTCGFKGPRRGTPFAAQTAAGNAIRAVADQ 86

[Close]

BLAST of Carg08337 vs. TrEMBL
Match: tr|A0A0S2IE96|A0A0S2IE96_9ROSI (Ribosomal protein S11 OS=Cucurbita cordata OX=1094862 GN=rps11 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.5e-04
Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ 107
           SWSS GTCGFKGPR  T FAAQTA GNAIRA A Q
Sbjct: 52  SWSSAGTCGFKGPRRGTPFAAQTAAGNAIRAVADQ 86

[Close]

BLAST of Carg08337 vs. TrEMBL
Match: tr|A0A0S2IE59|A0A0S2IE59_9ROSI (Ribosomal protein S11 OS=Cucurbita argyrosperma subsp. sororia OX=37648 GN=rps11 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.5e-04
Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ 107
           SWSS GTCGFKGPR  T FAAQTA GNAIRA A Q
Sbjct: 52  SWSSAGTCGFKGPRRGTPFAAQTAAGNAIRAVADQ 86

[Close]

BLAST of Carg08337 vs. TrEMBL
Match: tr|A0A0S2IFR8|A0A0S2IFR8_9ROSI (Ribosomal protein S11 OS=Cucurbita ecuadorensis OX=184135 GN=rps11 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.5e-04
Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ 107
           SWSS GTCGFKGPR  T FAAQTA GNAIRA A Q
Sbjct: 52  SWSSAGTCGFKGPRRGTPFAAQTAAGNAIRAVADQ 86

The following BLAST results are available for this feature:

BLAST of Carg08337 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009447483.1	8.2e-04	80.00	ribosomal protein S11 (chloroplast) [Cucurbita maxima] >YP_009447568.1 ribosomal...	[more]
ALO21945.1	8.2e-04	80.00	ribosomal protein S11 (plastid) [Cucurbita cordata] >ALO21975.1 ribosomal protei...	[more]

BLAST of Carg08337 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00750.1	6.3e-06	77.42	ribosomal protein S11	[more]

BLAST of Carg08337 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A4QJE8\|RR11_AETCO	3.0e-05	72.97	30S ribosomal protein S11, chloroplastic OS=Aethionema cordifolium OX=434059 GN=...	[more]
sp\|A4QJN2\|RR11_AETGR	3.0e-05	72.97	30S ribosomal protein S11, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=...	[more]
sp\|A4QKD8\|RR11_BARVE	5.1e-05	80.65	30S ribosomal protein S11, chloroplastic OS=Barbarea verna OX=50458 GN=rps11 PE=...	[more]
sp\|Q09ME4\|RR11_CITSI	5.1e-05	74.29	30S ribosomal protein S11, chloroplastic OS=Citrus sinensis OX=2711 GN=rps11 PE=...	[more]
sp\|A0ZZ68\|RR11_GOSBA	5.1e-05	80.65	30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]

BLAST of Carg08337 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0S2IGL1\|A0A0S2IGL1_CUCMO	5.5e-04	80.00	Ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=rps11 PE=3 SV=1	[more]
tr\|A0A0S2IF33\|A0A0S2IF33_9ROSI	5.5e-04	80.00	Ribosomal protein S11 OS=Cucurbita foetidissima OX=184136 GN=rps11 PE=3 SV=1	[more]
tr\|A0A0S2IE96\|A0A0S2IE96_9ROSI	5.5e-04	80.00	Ribosomal protein S11 OS=Cucurbita cordata OX=1094862 GN=rps11 PE=3 SV=1	[more]
tr\|A0A0S2IE59\|A0A0S2IE59_9ROSI	5.5e-04	80.00	Ribosomal protein S11 OS=Cucurbita argyrosperma subsp. sororia OX=37648 GN=rps11...	[more]
tr\|A0A0S2IFR8\|A0A0S2IFR8_9ROSI	5.5e-04	80.00	Ribosomal protein S11 OS=Cucurbita ecuadorensis OX=184135 GN=rps11 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08337-RA	Carg08337-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08337	CmoCh05G006770	Cucurbita moschata (Rifu)	carcmoB0087

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08337	Wax gourd	carwgoB0069
Carg08337	Silver-seed gourd	carcarB067
Carg08337	Silver-seed gourd	carcarB071
Carg08337	Silver-seed gourd	carcarB072
Carg08337	Cucumber (Gy14) v2	carcgybB0060
Carg08337	Cucumber (Gy14) v1	carcgyB0066
Carg08337	Cucurbita maxima (Rimu)	carcmaB0074
Carg08337	Cucurbita maxima (Rimu)	carcmaB0081
Carg08337	Cucurbita maxima (Rimu)	carcmaB0083
Carg08337	Cucurbita moschata (Rifu)	carcmoB0078
Carg08337	Cucurbita moschata (Rifu)	carcmoB0085
Carg08337	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08337	Cucurbita pepo (Zucchini)	carcpeB0082
Carg08337	Cucurbita pepo (Zucchini)	carcpeB0087
Carg08337	Wild cucumber (PI 183967)	carcpiB0063
Carg08337	Cucumber (Chinese Long) v2	carcuB0059
Carg08337	Cucumber (Chinese Long) v3	carcucB0065
Carg08337	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08337	Melon (DHL92) v3.5.1	carmeB0058
Carg08337	Melon (DHL92) v3.6.1	carmedB0059
Carg08337	Watermelon (Charleston Gray)	carwcgB0063
Carg08337	Watermelon (97103) v1	carwmB0058
Carg08337	Watermelon (97103) v2	carwmbB0061