CmoCh05G006770 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G006770
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	30S ribosomal protein S11, chloroplastic
Location	Cmo_Chr05 : 3430942 .. 3432484 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCCCACCACCAAAGTGGGATTTTGGGCCCAGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTACGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCACCCAAATCACTCATGGGTCCGTTTTCCTTTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCAATGGGACAATAATTCAATTAGACTATGGACATAACGAAGCAAGGTTTTACTTTTTTTCAAATTTTCATGCATTTCTTCGACTTTTGGAACTCGGCTCTAGAGCGCCTCCGTGCTAAAAACTCGAGAAGATCTAAGATTGAACTCCACAGGTCCCCATTTAAATGCCGTGTTTCACAAGTTTTGACTACAGAAGGTTAGAAACACATTTTGGTGATTCAAAATCTTTCCAAAACATGTTTTTAATCGTTCAGAATCAAACATGATAAGACATATCCGGAAGTGGTTTTGATCTAAGTCGAAAGTGGCCATAACCGTTTTCAAATGCAGTTGAAAGGGACCTTACTTCAATGCTATGAGTCTCTATGTATTACACATCCTTTTCAATAGTGACAGTTGGAAAGTGTGACGACTTTAACCTCCACAACTTTAACCTCCACAAAATCAGTTCTCTCAGCTTCTCCAAACGAGATAGATACCTGAATTCTAGGGGCATTTGAGACATTTCACAGCTAGCCACGCTTCGAAACCGAGACCTCGTCTTCTCGGAATGAATGAGTGGTCACAAGGAAGGGGAGAAAAAGATAAAAGAGGGTAAATTAAATAATTGTGTGTGTGTGTGTGTGTTTTTGGCTTATTTTGTTACCACCACTAGATTCTGTCTGTGAAGGGCGTGGGGTTAGACATTGTTGAAGAGAGGGCAGGAAAAAACTGAGCATCCAAGTGTTTGGTTAACATCATAGGATGGACAACCAAACATCATATGATTATTAAAACACAATGTTGTCGTCTTTTATGACCACAAACTGAAGCATCAATGTCACTCAGTTGCATGAATGCCTACCTACTTATGGATTGACTTTCCTCTTTTTTTTAGCCTTTTACTTTTGCCGTGAATTCCACTTAATCATCAATACCCCCCTTCAATTTTTCCTGTTCTCATTCTCTTCTTGAAAATTTATATTTGGAGTGGGAATTTAGTCGAAGATTTGAATTTGATTAGTTTTTTCGTTAAATGTCTCATCCTCGTTCATATAATAAACAACATTTGTATGAAATATCAAAGGGCGTTATTCATGTTAAAGCAAGTTTCAATAATACAATTGTGACTATTATAGGTGTACGGGGTCGAGTAATTTCTTGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCACAGGAAATGCTATTTGGGCAATAGCATATCAAGGTATGCAACGAGCAAAAGTCATGATAAAGAGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATCGTAGAAGTGGTATACTCTTAA

mRNA sequence

AAGCCCACCACCAAAGTGGGATTTTGGGCCCAGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTACGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCACCCAAATCACTCATGGGTCCGTTTTCCTTTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCAATGGGACAATAATTCAATTAGACTATGGACATAACGAAGCAAGGTGTACGGGGTCGAGTAATTTCTTGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCACAGGAAATGCTATTTGGGCAATAGCATATCAAGGTATGCAACGAGCAAAAGTCATGATAAAGAGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATCGTAGAAGTGGTATACTCTTAA

Coding sequence (CDS)

AAGCCCACCACCAAAGTGGGATTTTGGGCCCAGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTACGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCACCCAAATCACTCATGGGTCCGTTTTCCTTTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCAATGGGACAATAATTCAATTAGACTATGGACATAACGAAGCAAGGTGTACGGGGTCGAGTAATTTCTTGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCACAGGAAATGCTATTTGGGCAATAGCATATCAAGGTATGCAACGAGCAAAAGTCATGATAAAGAGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATCGTAGAAGTGGTATACTCTTAA

Homology

[Close]

BLAST of CmoCh05G006770 vs. Swiss-Prot
Match: RR11_CITSI (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI A+A QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIRAVADQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. Swiss-Prot
Match: RR11_NYMAL (30S ribosomal protein S11, chloroplastic OS=Nymphaea alba GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI A+  QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. Swiss-Prot
Match: RR11_LOTJA (30S ribosomal protein S11, chloroplastic OS=Lotus japonicus GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI  +A QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIRTVADQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. Swiss-Prot
Match: RR11_GOSBA (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI A+  QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. Swiss-Prot
Match: RR11_CARPA (30S ribosomal protein S11, chloroplastic OS=Carica papaya GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 1


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI A+  QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. TAIR10
Match: ATCG00750.1 (ATCG00750.1 ribosomal protein S11)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI A+  QGMQRA+V IK PGLGRDAALRAI
Sbjct: 77  GNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAI 109

The following BLAST results are available for this feature:

BLAST of CmoCh05G006770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR11_CITSI	3.7e-07	84.85	30S ribosomal protein S11, chloroplastic OS=Citrus sinensis GN=rps11 PE=3 SV=1	[more]
RR11_NYMAL	1.1e-06	81.82	30S ribosomal protein S11, chloroplastic OS=Nymphaea alba GN=rps11 PE=3 SV=1	[more]
RR11_LOTJA	1.1e-06	81.82	30S ribosomal protein S11, chloroplastic OS=Lotus japonicus GN=rps11 PE=3 SV=1	[more]
RR11_GOSBA	1.1e-06	81.82	30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense GN=rps11 PE=3 S...	[more]
RR11_CARPA	1.1e-06	81.82	30S ribosomal protein S11, chloroplastic OS=Carica papaya GN=rps11 PE=3 SV=1	[more]

BLAST of CmoCh05G006770 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh05G006770 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00750.1	3.0e-07	78.79	ATCG00750.1 ribosomal protein S11	[more]

BLAST of CmoCh05G006770 vs. NCBI nr


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001971	Ribosomal_S11

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G006770.1	CmoCh05G006770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 119..151 score: 4.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G006770	Carg08337	Silver-seed gourd	carcmoB0087

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G006770	Cucumber (Gy14) v2	cgybcmoB239
CmoCh05G006770	Melon (DHL92) v3.6.1	cmomedB816
CmoCh05G006770	Silver-seed gourd	carcmoB1318
CmoCh05G006770	Silver-seed gourd	carcmoB1320
CmoCh05G006770	Cucumber (Chinese Long) v3	cmocucB0919
CmoCh05G006770	Watermelon (97103) v2	cmowmbB800
CmoCh05G006770	Wax gourd	cmowgoB0947
CmoCh05G006770	Cucurbita moschata (Rifu)	cmocmoB151
CmoCh05G006770	Cucurbita moschata (Rifu)	cmocmoB159
CmoCh05G006770	Cucurbita moschata (Rifu)	cmocmoB373
CmoCh05G006770	Cucumber (Gy14) v1	cgycmoB0461
CmoCh05G006770	Cucurbita maxima (Rimu)	cmacmoB194
CmoCh05G006770	Cucurbita maxima (Rimu)	cmacmoB486
CmoCh05G006770	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G006770	Wild cucumber (PI 183967)	cmocpiB783
CmoCh05G006770	Cucumber (Chinese Long) v2	cmocuB778
CmoCh05G006770	Melon (DHL92) v3.5.1	cmomeB719
CmoCh05G006770	Watermelon (Charleston Gray)	cmowcgB713
CmoCh05G006770	Watermelon (97103) v1	cmowmB746
CmoCh05G006770	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G006770	Cucurbita pepo (Zucchini)	cmocpeB733
CmoCh05G006770	Cucurbita pepo (Zucchini)	cmocpeB747
CmoCh05G006770	Cucurbita pepo (Zucchini)	cmocpeB754
CmoCh05G006770	Bottle gourd (USVL1VR-Ls)	cmolsiB728