Carg27055 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27055
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein of unknown function (DUF3511)
Location	Cucurbita_argyrosperma_scaffold_205 : 216309 .. 216572 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAGCAAATCCTTCCCCAAGTACTCGTCCTCGTGCTCGGGCGAGTTCAGTTTCCAAACCCGATCCAACTCGTACAATTTCAATGGCCCGACTACAAAGGCTACTGGGTTCTCGACCTCGACTGATCCCGAGCTTCAAAGGAAGAGAAGAATTGCGTCGTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAGACTAAGTTTAGCGACATTCGCTATGGTTTGTGA

mRNA sequence

ATGGAGAAGAGCAAATCCTTCCCCAAGTACTCGTCCTCGTGCTCGGGCGAGTTCAGTTTCCAAACCCGATCCAACTCGTACAATTTCAATGGCCCGACTACAAAGGCTACTGGGTTCTCGACCTCGACTGATCCCGAGCTTCAAAGGAAGAGAAGAATTGCGTCGTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAGACTAAGTTTAGCGACATTCGCTATGGTTTGTGA

Coding sequence (CDS)

ATGGAGAAGAGCAAATCCTTCCCCAAGTACTCGTCCTCGTGCTCGGGCGAGTTCAGTTTCCAAACCCGATCCAACTCGTACAATTTCAATGGCCCGACTACAAAGGCTACTGGGTTCTCGACCTCGACTGATCCCGAGCTTCAAAGGAAGAGAAGAATTGCGTCGTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAGACTAAGTTTAGCGACATTCGCTATGGTTTGTGA

Protein sequence

MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

Homology

[Close]

BLAST of Carg27055 vs. NCBI nr
Match: XP_022930185.1 (uncharacterized protein LOC111436683 [Cucurbita moschata])

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Carg27055 vs. NCBI nr
Match: XP_023536368.1 (uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.1 bits (427), Expect = 6.7e-39
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPT KATGFSTSTDPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTGKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Carg27055 vs. NCBI nr
Match: XP_022974055.1 (uncharacterized protein LOC111472683 [Cucurbita maxima])

HSP 1 Score: 163.3 bits (412), Expect = 3.7e-37
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSCSGEF+FQTRSNSYNFNGPT  ATGFSTSTDPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRY L
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 87

[Close]

BLAST of Carg27055 vs. NCBI nr
Match: KGN45893.1 (hypothetical protein Csa_6G017090 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 6.3e-37
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Carg27055 vs. NCBI nr
Match: PON52652.1 (hypothetical protein PanWU01x14_207620 [Parasponia andersonii])

HSP 1 Score: 137.1 bits (344), Expect = 2.8e-29
Identity = 68/87 (78.16%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60
          MEKS+SFP+YSS+ SGEF F+ RSNSYNFNGP  K +GF TS+DPELQRK+RIASYNVF 
Sbjct: 1  MEKSRSFPEYSSAYSGEFGFRERSNSYNFNGPCQKGSGFVTSSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME KVKSSV+NSFKWIK+KFSDIRYG+
Sbjct: 61 MEGKVKSSVRNSFKWIKSKFSDIRYGV 87

[Close]

BLAST of Carg27055 vs. TAIR10
Match: AT4G09890.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-17
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCS-GEFSF-QTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNV 60
          M+ SKS+ +YSSS S  EF + Q RSNSYNFNGP         +TDPE++RK+R+ASYN+
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGP-------CINTDPEMKRKKRVASYNL 61

Query: 61 FNMENKVKSSVKNSFKWIKTKFS----DIRYGL 88
          F  E K+KS++KNSFKWIK KFS     IRY +
Sbjct: 62 FATEEKLKSTLKNSFKWIKNKFSGDDNSIRYNV 87

[Close]

BLAST of Carg27055 vs. TAIR10
Match: AT5G11970.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-09
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 10  YSSSCSGEF-----SFQTRSNSYNFNGPTTKATGFSTS---TDPELQRKRRIASYNVFNM 69
           Y  +  G+F     S+ TR N+  ++    K+   S S   TDPELQRK+R+ASY ++ +
Sbjct: 20  YHGNQGGDFRSYSASYGTRENNI-YDVKKEKSIARSKSWGITDPELQRKKRVASYKMYGV 79

Query: 70  ENKVKSSVKNSFKWIKTKFSDIRYG 87
           E KVK S +NSF+W+K +++ + YG
Sbjct: 80  EGKVKGSFRNSFRWLKQRYTQVVYG 103

[Close]

BLAST of Carg27055 vs. TAIR10
Match: AT1G72720.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-08
Identity = 38/100 (38.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 2   EKSKSFP----------KYSSSCSGEFSFQT----RSNSYNFNGPTTKATGFSTSTDPEL 61
           EKS+S P           YS+S    +   T     SN+ +      K  GF    + E+
Sbjct: 27  EKSESEPTNQQPPVMMRSYSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEI 86

Query: 62  QRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL 88
           QRK+R+ASYNV+ +E +VK S+K SFKW K   S+  YGL
Sbjct: 87  QRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYGL 126

[Close]

BLAST of Carg27055 vs. TAIR10
Match: AT3G05725.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 44  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL 88
           DPE++RKRR+A Y +++ E K+K +++ S+KWIK + S I +G+
Sbjct: 81  DPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHGI 124

[Close]

BLAST of Carg27055 vs. TAIR10
Match: AT2G19460.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 44  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTK 80
           DP+LQRK+R+ SY  + +E K+K S + SFKWIK K
Sbjct: 75  DPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDK 110

[Close]

BLAST of Carg27055 vs. TrEMBL
Match: tr|A0A0A0K8Y3|A0A0A0K8Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.1e-37
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Carg27055 vs. TrEMBL
Match: tr|A0A2P5BV48|A0A2P5BV48_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.9e-29
Identity = 68/87 (78.16%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60
          MEKS+SFP+YSS+ SGEF F+ RSNSYNFNGP  K +GF TS+DPELQRK+RIASYNVF 
Sbjct: 1  MEKSRSFPEYSSAYSGEFGFRERSNSYNFNGPCQKGSGFVTSSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME KVKSSV+NSFKWIK+KFSDIRYG+
Sbjct: 61 MEGKVKSSVRNSFKWIKSKFSDIRYGV 87

[Close]

BLAST of Carg27055 vs. TrEMBL
Match: tr|B9H7V5|B9H7V5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G195800v3 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-29
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F+ RSNSYNFNGP  K  GF+TS+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME K+KS+V+NSFKWIK+KFSD+RYG+
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYGM 87

[Close]

BLAST of Carg27055 vs. TrEMBL
Match: tr|A0A061FIS9|A0A061FIS9_THECC (Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao OX=3641 GN=TCM_047078 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-29
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F+ RSNSYNFNGP +K+ GF+ S DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME KVKSSV++SFKWIK+KFSD+RYG+
Sbjct: 61 MEGKVKSSVRSSFKWIKSKFSDVRYGM 87

[Close]

BLAST of Carg27055 vs. TrEMBL
Match: tr|A0A2P5FEP4|A0A2P5FEP4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_078380 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.3e-29
Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60
          MEKS+SFP+YSS+ SGEF F+ RSNSYNFNGP  K +GF+TS++PELQRK+RIASYNVF 
Sbjct: 1  MEKSRSFPEYSSAYSGEFGFRERSNSYNFNGPCQKGSGFATSSNPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          +E KVKSSV+NSFKWIK+KFSDIRYG+
Sbjct: 61 VEGKVKSSVRNSFKWIKSKFSDIRYGV 87

The following BLAST results are available for this feature:

BLAST of Carg27055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930185.1	1.0e-39	100.00	uncharacterized protein LOC111436683 [Cucurbita moschata]	[more]
XP_023536368.1	6.7e-39	98.85	uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo]	[more]
XP_022974055.1	3.7e-37	95.40	uncharacterized protein LOC111472683 [Cucurbita maxima]	[more]
KGN45893.1	6.3e-37	95.40	hypothetical protein Csa_6G017090 [Cucumis sativus]	[more]
PON52652.1	2.8e-29	78.16	hypothetical protein PanWU01x14_207620 [Parasponia andersonii]	[more]

BLAST of Carg27055 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09890.1	1.4e-17	55.91	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	3.9e-09	40.00	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	5.7e-08	38.00	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	1.1e-06	45.45	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	2.4e-06	55.56	Protein of unknown function (DUF3511)	[more]

BLAST of Carg27055 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27055 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8Y3\|A0A0A0K8Y3_CUCSA	4.1e-37	95.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1	[more]
tr\|A0A2P5BV48\|A0A2P5BV48_PARAD	1.9e-29	78.16	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE...	[more]
tr\|B9H7V5\|B9H7V5_POPTR	2.4e-29	75.86	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G195800v3 PE=...	[more]
tr\|A0A061FIS9\|A0A061FIS9_THECC	3.2e-29	75.86	Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao OX=3641...	[more]
tr\|A0A2P5FEP4\|A0A2P5FEP4_9ROSA	9.3e-29	75.86	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_078380 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27055-RA	Carg27055-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 43..86 e-value: 1.8E-24 score: 85.2
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 1..86
None	No IPR available	PANTHER	PTHR33193:SF9	SUBFAMILY NOT NAMED	coord: 1..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27055	CmaCh09G011970	Cucurbita maxima (Rimu)	carcmaB0036
Carg27055	CmoCh09G012120	Cucurbita moschata (Rifu)	carcmoB0036
Carg27055	Cp4.1LG06g09680	Cucurbita pepo (Zucchini)	carcpeB0039

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None