Carg11493-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11493-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein of unknown function, DUF538
Location	Cucurbita_argyrosperma_scaffold_083 : 231145 .. 231835 (-)
Sequence length	420

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCCTCTTCCTCCGTGCTCTTCCTCTGCTTCTCCTTCCTCTACTTCACCTCTTCAATGGCGGCTCCTTATGCTCTCAGCGACTTCACTGCTTCGAAGTCGATTTACGATGTGCTATTGGCTCATGGCCTTCCCAAGGGGCTACTTCCGAAAGGGCGTCAGGGATTACCAATTCGATCAGGACACTGGCCGCTTTCTCGTGTTTTTGGATCAGGAGTGTAATGCGATGTTCGAGAATCAACTGCATTACGAGACTAATGTTTCCGGCACTTTGAGTTATGGCCAGATCGGCGCCTTGTCTGGGATTTCCGCCAAGGATCTCTTCTTGTGGTTTCCTGTTAAGGGGATTCGCGTCGATGTTCCTAGCTCCGGTGTTATTTATTTCGACGTCGGTGTTGTTTTCAAGCAATTCTCTCAGTCTCTCTTCGAAACCCCGCCTGAATGTGTCCCTAATTCTAAGGTTTTGATCTAATTTTTTAAAAAAATTTCATACTCTATTAGTTTCATTAGTTTGTGATTCTCTGCTGCTGGAAACTCGATCAATATTGGTGAAGTTGTCTGAGTTCAATTCAGTTGGATTGGGAGAAATGTCTGATTAACATGTGACTGTTTTTTTTCCCATCTGCAGACTCAACACAGAAAGATTGGGAATGGATTTGTTCAGCCAGTTCAAGTGAAAGTGGATTGA

mRNA sequence

ATGCTTCCCTCTTCCTCCGTGCTCTTCCTCTGCTTCTCCTTCCTCTACTTCACCTCTTCAATGGCGGCTCCTTATGCTCTCAGCGACTTCACTGCTTCGAAGTCGATTTACGATGAGTGTAATGCGATGTTCGAGAATCAACTGCATTACGAGACTAATGTTTCCGGCACTTTGAGTTATGGCCAGATCGGCGCCTTGTCTGGGATTTCCGCCAAGGATCTCTTCTTGTGGTTTCCTGTTAAGGGGATTCGCGTCGATGTTCCTAGCTCCGGTGTTATTTATTTCGACGTCGGTGTTGTTTTCAAGCAATTCTCTCAGTCTCTCTTCGAAACCCCGCCTGAATGTGTCCCTAATTCTAAGACTCAACACAGAAAGATTGGGAATGGATTTGTTCAGCCAGTTCAAGTGAAAGTGGATTGA

Coding sequence (CDS)

ATGCTTCCCTCTTCCTCCGTGCTCTTCCTCTGCTTCTCCTTCCTCTACTTCACCTCTTCAATGGCGGCTCCTTATGCTCTCAGCGACTTCACTGCTTCGAAGTCGATTTACGATGAGTGTAATGCGATGTTCGAGAATCAACTGCATTACGAGACTAATGTTTCCGGCACTTTGAGTTATGGCCAGATCGGCGCCTTGTCTGGGATTTCCGCCAAGGATCTCTTCTTGTGGTTTCCTGTTAAGGGGATTCGCGTCGATGTTCCTAGCTCCGGTGTTATTTATTTCGACGTCGGTGTTGTTTTCAAGCAATTCTCTCAGTCTCTCTTCGAAACCCCGCCTGAATGTGTCCCTAATTCTAAGACTCAACACAGAAAGATTGGGAATGGATTTGTTCAGCCAGTTCAAGTGAAAGTGGATTGA

Protein sequence

MLPSSSVLFLCFSFLYFTSSMAAPYALSDFTASKSIYDECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVDVPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNGFVQPVQVKVD

Homology

[Close]

BLAST of Carg11493-RA vs. NCBI nr
Match: XP_022954139.1 (uncharacterized protein At5g01610-like [Cucurbita moschata])

HSP 1 Score: 259.6 bits (662), Expect = 6.0e-66
Identity = 138/173 (79.77%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 1   MLPSSSVLFLCFSFLYFTSSMAAPYALSDFTASKSIYD---------------------- 60
           MLPSSSVLFL FSFLYFTSSMAAPYALSDFTASKSIYD                      
Sbjct: 1   MLPSSSVLFLWFSFLYFTSSMAAPYALSDFTASKSIYDVLLAHGLPKGLLPKGVRDYQFD 60

Query: 61  ------------ECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVD 120
                       ECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVD
Sbjct: 61  QDTGRFLVFLDQECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVD 120

Query: 121 VPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNGFVQPVQVKVD 140
           VPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNGFVQPVQVKVD
Sbjct: 121 VPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNGFVQPVQVKVD 173

[Close]

BLAST of Carg11493-RA vs. NCBI nr
Match: XP_022991665.1 (uncharacterized protein At5g01610-like [Cucurbita maxima])

HSP 1 Score: 256.1 bits (653), Expect = 6.7e-65
Identity = 136/172 (79.07%), Postives = 137/172 (79.65%), Query Frame = 0


Query: 1   MLPSSSVLFLCFSFLYFTSSMAAPYALSDFTASKSIYD---------------------- 60
           MLPSSS+LFL FSFLYFTSSMAAPYALSDFTASKSIYD                      
Sbjct: 1   MLPSSSMLFLWFSFLYFTSSMAAPYALSDFTASKSIYDVLLAHGLPKGLLPKGVRDYQFD 60

Query: 61  ------------ECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVD 120
                       ECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVD
Sbjct: 61  QDTGRFLVFLDQECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVD 120

Query: 121 VPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNGFVQPVQVKV 139
           VPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNGFVQPVQVKV
Sbjct: 121 VPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNGFVQPVQVKV 172

[Close]

BLAST of Carg11493-RA vs. NCBI nr
Match: XP_023549341.1 (uncharacterized protein At5g01610-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.8 bits (595), Expect = 3.5e-58
Identity = 130/178 (73.03%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   MLPSSSVLFLCF-----SFLYFTSSMAAPYALSDFTASKSIYD----------------- 60
           MLPSSSVLFL F            SMAAPYALSDFTASKSIYD                 
Sbjct: 1   MLPSSSVLFLWFXXXXXXXXXXXXSMAAPYALSDFTASKSIYDVLLAHGLPKGLLPKGVR 60

Query: 61  -----------------ECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVK 120
                            ECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVK
Sbjct: 61  DYQFDQDTGRFLVFLDQECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVK 120

Query: 121 GIRVDVPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNGFVQPVQVKVD 140
            IRVDVPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNGFVQPVQVKVD
Sbjct: 121 EIRVDVPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNGFVQPVQVKVD 178

[Close]

BLAST of Carg11493-RA vs. NCBI nr
Match: XP_004150364.1 (PREDICTED: uncharacterized protein At5g01610-like [Cucumis sativus] >KGN44689.1 hypothetical protein Csa_7G372350 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 111/164 (67.68%), Postives = 119/164 (72.56%), Query Frame = 0


Query: 1   MLPSSSVLFLCFSFLYFTSSMAAPYAL-SDFTASKSIYD--------------------- 60
           M P  S+LFL FSFLYFTSSMA P++L S ++ S S YD                     
Sbjct: 1   MFPPFSILFLWFSFLYFTSSMADPHSLNSYYSRSNSFYDVLLSHGLPKGLLPKGITDYQI 60

Query: 61  -------------ECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRV 120
                        ECNAMFENQLHYETNVSGTLSYG+IGALSGISA+DLFLWFPVKGIRV
Sbjct: 61  DADTGRFVVFLDRECNAMFENQLHYETNVSGTLSYGKIGALSGISAQDLFLWFPVKGIRV 120

Query: 121 DVPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNG 130
           DVPSSGVIYFDVGVVFKQFSQSLFETPP CVPNSK+QHRKIGNG
Sbjct: 121 DVPSSGVIYFDVGVVFKQFSQSLFETPPVCVPNSKSQHRKIGNG 164

[Close]

BLAST of Carg11493-RA vs. NCBI nr
Match: XP_008447224.1 (PREDICTED: uncharacterized protein At5g01610-like [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 110/164 (67.07%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MLPSSSVLFLCFSFLYFTSSMAAPYALSDF-TASKSIYD--------------------- 60
           M P SS+ FL FSFLYFTSS+A P++L+ F + S SIYD                     
Sbjct: 1   MFPPSSMPFLWFSFLYFTSSLADPHSLNYFYSPSNSIYDVLLAHGLPKGLLPKGVRDYEF 60

Query: 61  -------------ECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRV 120
                        ECNAMFENQLHYETNVSGTLSYG+IGALSGISA+DLFLWFPVKGIRV
Sbjct: 61  DVDTGRFLVFLDRECNAMFENQLHYETNVSGTLSYGKIGALSGISAQDLFLWFPVKGIRV 120

Query: 121 DVPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNG 130
           DVPSSGVIYFDVGVVFKQFSQSLFETPP CVPN+K+QHRKIGNG
Sbjct: 121 DVPSSGVIYFDVGVVFKQFSQSLFETPPVCVPNTKSQHRKIGNG 164

[Close]

BLAST of Carg11493-RA vs. TAIR10
Match: AT3G07470.1 (Protein of unknown function, DUF538)

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-28
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 31  TASKSIY--DECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVDVP 90
           T   S+Y    C A +E ++HY+ N++GT+   QI  LSGISA++LFLWFPVKGIRVDVP
Sbjct: 58  TGRFSVYLNQACEAKYETEIHYDANITGTIGSAQISDLSGISAQELFLWFPVKGIRVDVP 117

Query: 91  SSGVIYFDVGVVFKQFSQSLFETPPECVP 118
           SSG+IYFDVGVV KQ+S SLFETP +CVP
Sbjct: 118 SSGLIYFDVGVVRKQYSLSLFETPRDCVP 146

[Close]

BLAST of Carg11493-RA vs. TAIR10
Match: AT3G07460.2 (Protein of unknown function, DUF538)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-25
Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 25  YALSDFTASKSIY--DECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKG 84
           + ++  T   S+Y    C A +E +LHY+  VSGT+ Y QI  LSGISA++LFLW  VKG
Sbjct: 51  FTVNGETGRFSVYLNQSCQAKYETELHYDEIVSGTIGYAQIRDLSGISAQELFLWLQVKG 110

Query: 85  IRVDVPSSGVIYFDVGVVFKQFSQSLFETPPECV 117
           IRVDVPSSG+I+FDVGV+ KQ+S SLFETP +CV
Sbjct: 111 IRVDVPSSGLIFFDVGVLRKQYSLSLFETPRDCV 144

[Close]

BLAST of Carg11493-RA vs. TAIR10
Match: AT5G16380.1 (Protein of unknown function, DUF538)

HSP 1 Score: 105.1 bits (261), Expect = 3.4e-23
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 40  CNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVDVPSSGVIYFDVGV 99
           C+A FENQ H++ N+SG LS G+IG LSG++ K+LFLWF VKGI VD  SSG+I+FDVGV
Sbjct: 69  CDAKFENQFHFDYNISGVLSDGRIGNLSGVTQKELFLWFAVKGIHVDPQSSGLIHFDVGV 128

Query: 100 VFKQFSQSLFETPPEC 116
             KQ S SLFE+P +C
Sbjct: 129 ADKQLSLSLFESPRDC 144

[Close]

BLAST of Carg11493-RA vs. TAIR10
Match: AT5G54530.1 (Protein of unknown function, DUF538)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-20
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 40  CNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVDVPSSGVIYFDVGV 99
           C A FE  +H+E  V G LSYG +  + G+S K+LFLW  VK I V+ P+SGVI FD+GV
Sbjct: 66  CYAKFETNVHFEAVVRGNLSYGSLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGV 125

Query: 100 VFKQFSQSLFETPPECVPN 119
            FKQ S SLFE PP+C P+
Sbjct: 126 AFKQLSLSLFEDPPKCKPD 144

[Close]

BLAST of Carg11493-RA vs. TAIR10
Match: AT1G61667.1 (Protein of unknown function, DUF538)

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-20
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 25  YALSDFTASKSI--YDECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKG 84
           Y+L D T    +   + C A FEN+++++  +   LSYG +  L G++ ++LFLW PVKG
Sbjct: 43  YSLDDKTGELEVQLQNPCFARFENRVYFDRVIKANLSYGGLVGLEGLTQEELFLWLPVKG 102

Query: 85  IRVDVPSSGVIYFDVGVVFKQFSQSLFETPPECVP 118
           I V+ PSSG++ FD+GV  KQ S+SLFE PP C P
Sbjct: 103 IAVNDPSSGLVLFDIGVAHKQISRSLFEDPPVCYP 137

[Close]

BLAST of Carg11493-RA vs. TrEMBL
Match: tr|A0A0A0K6Z0|A0A0A0K6Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372350 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 8.9e-50
Identity = 111/164 (67.68%), Postives = 119/164 (72.56%), Query Frame = 0


Query: 1   MLPSSSVLFLCFSFLYFTSSMAAPYAL-SDFTASKSIYD--------------------- 60
           M P  S+LFL FSFLYFTSSMA P++L S ++ S S YD                     
Sbjct: 1   MFPPFSILFLWFSFLYFTSSMADPHSLNSYYSRSNSFYDVLLSHGLPKGLLPKGITDYQI 60

Query: 61  -------------ECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRV 120
                        ECNAMFENQLHYETNVSGTLSYG+IGALSGISA+DLFLWFPVKGIRV
Sbjct: 61  DADTGRFVVFLDRECNAMFENQLHYETNVSGTLSYGKIGALSGISAQDLFLWFPVKGIRV 120

Query: 121 DVPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNG 130
           DVPSSGVIYFDVGVVFKQFSQSLFETPP CVPNSK+QHRKIGNG
Sbjct: 121 DVPSSGVIYFDVGVVFKQFSQSLFETPPVCVPNSKSQHRKIGNG 164

[Close]

BLAST of Carg11493-RA vs. TrEMBL
Match: tr|A0A1S3BGD3|A0A1S3BGD3_CUCME (uncharacterized protein At5g01610-like OS=Cucumis melo OX=3656 GN=LOC103489718 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-49
Identity = 110/164 (67.07%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MLPSSSVLFLCFSFLYFTSSMAAPYALSDF-TASKSIYD--------------------- 60
           M P SS+ FL FSFLYFTSS+A P++L+ F + S SIYD                     
Sbjct: 1   MFPPSSMPFLWFSFLYFTSSLADPHSLNYFYSPSNSIYDVLLAHGLPKGLLPKGVRDYEF 60

Query: 61  -------------ECNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRV 120
                        ECNAMFENQLHYETNVSGTLSYG+IGALSGISA+DLFLWFPVKGIRV
Sbjct: 61  DVDTGRFLVFLDRECNAMFENQLHYETNVSGTLSYGKIGALSGISAQDLFLWFPVKGIRV 120

Query: 121 DVPSSGVIYFDVGVVFKQFSQSLFETPPECVPNSKTQHRKIGNG 130
           DVPSSGVIYFDVGVVFKQFSQSLFETPP CVPN+K+QHRKIGNG
Sbjct: 121 DVPSSGVIYFDVGVVFKQFSQSLFETPPVCVPNTKSQHRKIGNG 164

[Close]

BLAST of Carg11493-RA vs. TrEMBL
Match: tr|A0A2I4HU85|A0A2I4HU85_9ROSI (uncharacterized protein LOC109021507 isoform X1 OS=Juglans regia OX=51240 GN=LOC109021507 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-33
Identity = 69/94 (73.40%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 40  CNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVDVPSSGVIYFDVGV 99
           CNA FE+QLHY+ NVSGTLSYGQIGALSGISA++LFLWFPVKGIRVD+PSSG+IYFDVGV
Sbjct: 69  CNAKFESQLHYDRNVSGTLSYGQIGALSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGV 128

Query: 100 VFKQFSQSLFETPPECVPNSKTQHRKI--GNGFV 132
           V+KQFS SLFETPP+C+      H ++  G+GF+
Sbjct: 129 VYKQFSLSLFETPPDCMAKMTVDHAQLPDGSGFI 162

[Close]

BLAST of Carg11493-RA vs. TrEMBL
Match: tr|A0A2I4HU66|A0A2I4HU66_9ROSI (uncharacterized protein LOC109021507 isoform X2 OS=Juglans regia OX=51240 GN=LOC109021507 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-33
Identity = 69/94 (73.40%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 40  CNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVDVPSSGVIYFDVGV 99
           CNA FE+QLHY+ NVSGTLSYGQIGALSGISA++LFLWFPVKGIRVD+PSSG+IYFDVGV
Sbjct: 69  CNAKFESQLHYDRNVSGTLSYGQIGALSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGV 128

Query: 100 VFKQFSQSLFETPPECVPNSKTQHRKI--GNGFV 132
           V+KQFS SLFETPP+C+      H ++  G+GF+
Sbjct: 129 VYKQFSLSLFETPPDCMAKMTVDHAQLPDGSGFI 162

[Close]

BLAST of Carg11493-RA vs. TrEMBL
Match: tr|A0A2P5CY89|A0A2P5CY89_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_269540 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-32
Identity = 67/77 (87.01%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 40  CNAMFENQLHYETNVSGTLSYGQIGALSGISAKDLFLWFPVKGIRVDVPSSGVIYFDVGV 99
           CNA FEN+LHY+ NVSGTLSYGQIGALSGISA++LFLWFPVKGIRVD+PSSG+IYFDVGV
Sbjct: 67  CNAKFENELHYDRNVSGTLSYGQIGALSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGV 126

Query: 100 VFKQFSQSLFETPPECV 117
           VFKQFS SLFETPP+CV
Sbjct: 127 VFKQFSLSLFETPPDCV 143

The following BLAST results are available for this feature:

BLAST of Carg11493-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954139.1	6.0e-66	79.77	uncharacterized protein At5g01610-like [Cucurbita moschata]	[more]
XP_022991665.1	6.7e-65	79.07	uncharacterized protein At5g01610-like [Cucurbita maxima]	[more]
XP_023549341.1	3.5e-58	73.03	uncharacterized protein At5g01610-like [Cucurbita pepo subsp. pepo]	[more]
XP_004150364.1	1.3e-49	67.68	PREDICTED: uncharacterized protein At5g01610-like [Cucumis sativus] >KGN44689.1 ...	[more]
XP_008447224.1	5.1e-49	67.07	PREDICTED: uncharacterized protein At5g01610-like [Cucumis melo]	[more]

BLAST of Carg11493-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07470.1	2.7e-28	64.04	Protein of unknown function, DUF538	[more]
AT3G07460.2	2.2e-25	58.51	Protein of unknown function, DUF538	[more]
AT5G16380.1	3.4e-23	63.16	Protein of unknown function, DUF538	[more]
AT5G54530.1	1.2e-20	55.70	Protein of unknown function, DUF538	[more]
AT1G61667.1	2.7e-20	46.32	Protein of unknown function, DUF538	[more]

BLAST of Carg11493-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11493-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6Z0\|A0A0A0K6Z0_CUCSA	8.9e-50	67.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372350 PE=4 SV=1	[more]
tr\|A0A1S3BGD3\|A0A1S3BGD3_CUCME	3.4e-49	67.07	uncharacterized protein At5g01610-like OS=Cucumis melo OX=3656 GN=LOC103489718 P...	[more]
tr\|A0A2I4HU85\|A0A2I4HU85_9ROSI	2.0e-33	73.40	uncharacterized protein LOC109021507 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4HU66\|A0A2I4HU66_9ROSI	2.0e-33	73.40	uncharacterized protein LOC109021507 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2P5CY89\|A0A2P5CY89_9ROSA	2.9e-32	87.01	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_269540 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007493	DUF538
IPR036758	At5g01610-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11493	Carg11493	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11493-RA	Carg11493-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11493-RA.CDS.3	Carg11493-RA.CDS.3	CDS
Carg11493-RA.CDS.2	Carg11493-RA.CDS.2	CDS
Carg11493-RA.CDS.1	Carg11493-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11493-RA.exon.3	Carg11493-RA.exon.3	exon
Carg11493-RA.exon.2	Carg11493-RA.exon.2	exon
Carg11493-RA.exon.1	Carg11493-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036758	At5g01610-like superfamily	GENE3D	G3DSA:2.30.240.10		coord: 22..120 e-value: 8.6E-14 score: 53.5
IPR036758	At5g01610-like superfamily	SUPERFAMILY	SSF141562	At5g01610-like	coord: 37..118
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 38..110 e-value: 3.5E-17 score: 62.8
IPR007493	Protein of unknown function DUF538	PANTHER	PTHR31676	FAMILY NOT NAMED	coord: 38..126
None	No IPR available	PANTHER	PTHR31676:SF65	SUBFAMILY NOT NAMED	coord: 38..126