Carg22670-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22670-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	prefoldin subunit 1
Location	Cucurbita_argyrosperma_scaffold_148 : 415961 .. 417949 (-)
Sequence length	372

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACGAGGCGAACAGAGCTGTGAGTATTTCTACTCTTCTCATCTTGTTTTTCCACTCGCCACTGCCATTTTCCGATGCATGAACTCTTGATTTTGTTTCTGGAATCAGACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTAATCTCCTTTCATTTTTCACATAAATCTTTTGTAATTACTGTCTAGATTGTTCTTATTCATATTCGTGTTTAATTTCTAAAGTAAACGAATGTTTCCTAGGTTAACTGATGAATCCAATCAATGTTCGTATTTCCAGTTTTGTCATTCTTCGATGTTTCGCTTTATTTGAATGGAGAGTTCTTGATTTATGAGTTCAAGCTGGTGTTCTTTCTCCTTGCTTTGCAGGTGCAAAGCCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACTTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGGTACTCGACAAATCTGTATTTTGTAACTGGAAATTTGTTCATTCTTTGCCTCAATCGTGATTGCTTATCATTGATTTCTTTCCATCATTCTTTGTGGTGCAGGGAGAGCGTGAGTTATGCTACAATTGATCGATCCAGTTGAAGTTAGATTTTCTTTTATCTCATAGTATATATATGAAATTCTCTTACTTTGTGTTGTCTCATCCTGACCAGGTTTGTTTTAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGTTCAAGGATAGTGAAGCTGCAATTGTCTCACTGCAGGTTCATATTAGTATTACTTTCATCTGTAGAGACAAGAGATCTTCCTTTGAGTTCCCAATTTTGTATGCCTATCATTCACGTTGTCTTTTCTTGAAGATTTTGTTAGAGCATTTTTCATTCACTAACTAACATTTTCTTGCCCTTCTATGTTCGATGTGTAACGACCCTAGATTTTTACTAACCTAAAGTCTCTACCGTCATTATACTATACTCTCTTATACTGAAAATAAACCTTGAAAATATTGTCGTAAAACATTGCCATGGACTTGTATGTTTGAAATCATCTTTAAAAGAACCCAAGGAAATACTAAATAAATCAAGTAAAACATTAAAAGTAAAAACACCCTATACTAACCTAAAGTCTAAGAGATGAAATACCACTATCCTATGCACGTGTCATGATCTCTACTTGCAATGTCCTCGTCAACTGCACAGGGGTACTTTGTCTTTACCTGAAATAGAAATAGCACACGGCTTGAGTATTTTAAGAAATACTCCGTAAGTGGGGGTCAGGGAATGCAAACACATACAATTCATGATTAGAGGCCTATCGTTAAAATCATCATAGGGGTCGTTACACTATGTTTTCTTGAAATTTTAATTCTTGCATTAACACAGAATCCGCACACACACAAAAGGGTATTTCTTATGAGGATCTGGGCATATCCAAACACTTCTTTGAACGAATTACGTTCAGTGAAGAGTTCGATGCCATCAATGCTACCTTCTTTCTTGCCAACTAGAACTTAGCTCAAGCATACACACAATATTCTTGGCTTTCAATTTTTTCTTGTCAATTTGAACATAGCTCAATCTGTGAAGGCATATAGATACAATATCCTCGACATCTAATTGAAAGCGAACTTGCTTTTCTGTTTTGGCATCTAATTGAAAGCGAACTAATCACGTTATTTGACTGGTAGAGGTGTCGTTACCAAGAGATTTGGAGAGTAGGCTGAACTTTTGTGATTGACACTATTTGGCAATGTTCTTATTTAATCTTTGATAATTGGCATTTGGGTATTTTTTTTTATTATGAACCCTTCATTGAAGATGGCTTTCTTGCACGTTTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGTCTGTAGCATAA

mRNA sequence

ATGGCGGACGAGGCGAACAGAGCTACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTGCAAAGCCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACTTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGTTCAAGGATAGTGAAGCTGCAATTGTCTCACTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGTCTGTAGCATAA

Coding sequence (CDS)

ATGGCGGACGAGGCGAACAGAGCTACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTGCAAAGCCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACTTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGTTCAAGGATAGTGAAGCTGCAATTGTCTCACTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGTCTGTAGCATAA

Protein sequence

MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIEPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIARQIMSMSVA

Homology

[Close]

BLAST of Carg22670-RA vs. NCBI nr
Match: XP_022937756.1 (prefoldin subunit 1-like [Cucurbita moschata])

HSP 1 Score: 216.1 bits (549), Expect = 6.8e-53
Identity = 121/129 (93.80%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNL+EL+QQDPGIA
Sbjct: 61  IGRAFVLEPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLKELVQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Carg22670-RA vs. NCBI nr
Match: XP_023536940.1 (prefoldin subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.1 bits (549), Expect = 6.8e-53
Identity = 122/129 (94.57%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLMAEQEQK KDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA
Sbjct: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Carg22670-RA vs. NCBI nr
Match: XP_022966081.1 (prefoldin subunit 1 [Cucurbita maxima])

HSP 1 Score: 213.8 bits (543), Expect = 3.4e-52
Identity = 120/129 (93.02%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLMAEQEQK KDSEAAIVSLQSSKEYLEKQKAEVENNL+ELLQQDPGIA
Sbjct: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSM+VA
Sbjct: 121 RQIMSMTVA 129

[Close]

BLAST of Carg22670-RA vs. NCBI nr
Match: XP_022929581.1 (prefoldin subunit 1-like [Cucurbita moschata])

HSP 1 Score: 202.6 bits (514), Expect = 7.7e-49
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ANRATFLEIQGRMIEITGKLKQVQ+Q+RNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSEAAI SL SSKEYLEKQ AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLEPKSVLMNEQEQKLKDSEAAIGSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMS+A
Sbjct: 121 RQIMSMSLA 129

[Close]

BLAST of Carg22670-RA vs. NCBI nr
Match: XP_023546624.1 (prefoldin subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 114/129 (88.37%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ANRATFLEIQGRMIEITGKLKQVQ+Q+RNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSEA I SL SSKEYLEKQ AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Carg22670-RA vs. TAIR10
Match: AT2G07340.1 (PREFOLDIN 1)

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-44
Identity = 95/128 (74.22%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEA RA F+EIQ  MIE+TGKLKQVQ+Q+RNKEG++KRAFLTLEEL+ L ++TN YKS
Sbjct: 1   MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPK+VL  EQEQK KDSEAA+ SLQ+SKEYLEKQ AEVENNLRELLQQ+PGIA
Sbjct: 61  IGRTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIA 120

Query: 121 RQIMSMSV 123
           +QIMSMS+
Sbjct: 121 QQIMSMSM 128

[Close]

BLAST of Carg22670-RA vs. Swiss-Prot
Match: sp|Q3SZE2|PFD1_BOVIN (Prefoldin subunit 1 OS=Bos taurus OX=9913 GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIEPKSV 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +    +
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LMAEQE------QKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
           L +++       +K K +E  I  L+  K YLE+   E E+N+RE+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEXXKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Carg22670-RA vs. Swiss-Prot
Match: sp|Q9CWM4|PFD1_MOUSE (Prefoldin subunit 1 OS=Mus musculus OX=10090 GN=Pfdn1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSI----- 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +     
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  -EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
            + K V+  +  +K K ++  I  L+  K YLE+   E E+N+RE+L
Sbjct: 70  LQSKEVIHNQLLEKQKIAKEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Carg22670-RA vs. Swiss-Prot
Match: sp|Q5RAM7|PFD1_PONAB (Prefoldin subunit 1 OS=Pongo abelii OX=9601 GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIEPKSV 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +    +
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LMAEQE------QKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
           L +++       +K K +E  I  L+  K YLE+   E E+N+RE+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEXXKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Carg22670-RA vs. Swiss-Prot
Match: sp|O60925|PFD1_HUMAN (Prefoldin subunit 1 OS=Homo sapiens OX=9606 GN=PFDN1 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 33/107 (30.84%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSI----- 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +     
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  -EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
            + K  + ++  +K K +E  I  L+    YLE+   E E+N+RE+L
Sbjct: 70  LQSKEAIHSQLLEKQKIAEEKIKELEXXXSYLERSVKEAEDNIREML 116

[Close]

BLAST of Carg22670-RA vs. Swiss-Prot
Match: sp|Q54JS0|PFD1_DICDI (Probable prefoldin subunit 1 OS=Dictyostelium discoideum OX=44689 GN=pfdn1 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 26/110 (23.64%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 6   NRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS----- 65
           ++  F E + ++  ++  L  ++ +++  E ++K+  +T+ EL+ LS +T  YK+     
Sbjct: 5   DKQAFFETREKLYTLSRSLNIIKQRIQIAENDRKKCLITINELESLSSETKTYKAVGKMF 64

Query: 66  -IEPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQ 110
            I P + L  E +Q+ +  E  +  L +  +Y++ Q  + E +L EL+++
Sbjct: 65  VISPMTSLKTELKQQVQKDEEDVKGLINQSKYIDAQITDTERSLNELVRK 114

[Close]

BLAST of Carg22670-RA vs. TrEMBL
Match: tr|A0A0A0LJF7|A0A0A0LJF7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070850 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.7e-48
Identity = 111/129 (86.05%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE NRATFLEIQGRMIEITGKLKQ+Q+Q+RNKEGEKKRAFLTLEELKQL++DTN YKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      E KSVLM EQEQKFKDSE AI SLQSSKEYLEKQ AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Carg22670-RA vs. TrEMBL
Match: tr|A0A2I4EVP4|A0A2I4EVP4_9ROSI (prefoldin subunit 1 OS=Juglans regia OX=51240 GN=LOC108993147 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.3e-46
Identity = 106/128 (82.81%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRA F+EIQGRMIEITGKLKQVQ Q+RNKEGEKKRAFLTLEEL+QLSDD N YKS
Sbjct: 1   MADEANRAAFIEIQGRMIEITGKLKQVQIQLRNKEGEKKRAFLTLEELRQLSDDANTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSE AI SLQ+SKEYLEKQ+AEVENN RELLQQDPG+A
Sbjct: 61  IGRTFFLEPKSVLMNEQEQKLKDSETAIASLQTSKEYLEKQRAEVENNFRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIMSM+V
Sbjct: 121 RQIMSMTV 128

[Close]

BLAST of Carg22670-RA vs. TrEMBL
Match: tr|A0A2G9GHY4|A0A2G9GHY4_9LAMI (Molecular chaperone Prefoldin, subunit 1 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22564 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.9e-46
Identity = 106/128 (82.81%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANR  FLEIQGRMIE TGKLKQVQ+Q+RNKEGEKKRA+LTLEELKQLSDDTN YKS
Sbjct: 1   MADEANRTAFLEIQGRMIETTGKLKQVQNQLRNKEGEKKRAYLTLEELKQLSDDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSEAA+ SLQ+SK+YLEKQ AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFILEPKSVLMEEQEQKLKDSEAAMSSLQTSKQYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIM+MSV
Sbjct: 121 RQIMAMSV 128

[Close]

BLAST of Carg22670-RA vs. TrEMBL
Match: tr|A0A2P4IPN7|A0A2P4IPN7_QUESU (Prefoldin subunit 1 OS=Quercus suber OX=58331 GN=CFP56_67478 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.6e-45
Identity = 105/128 (82.03%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRA F+EIQGRMIE TGKLKQVQ+Q+RNKEGEKKRAFLTLEEL+QLS+DTN YKS
Sbjct: 1   MADEANRAAFMEIQGRMIETTGKLKQVQNQMRNKEGEKKRAFLTLEELRQLSNDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSE AI SLQ+SKEYLE Q AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKSVLMNEQEQKLKDSETAIASLQASKEYLENQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIMSM+V
Sbjct: 121 RQIMSMTV 128

[Close]

BLAST of Carg22670-RA vs. TrEMBL
Match: tr|A0A061FRM5|A0A061FRM5_THECC (Prefoldin 1 OS=Theobroma cacao OX=3641 GN=TCM_044384 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.6e-45
Identity = 104/128 (81.25%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE N+  FLEIQGRMIE+TGKLKQVQ+Q+RNKEGEKKRA+LTLEEL+QLSDDTN YKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRNKEGEKKRAYLTLEELRQLSDDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPK VLM EQEQK KDSE+AI SLQ+SKEYLEKQ AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKPVLMNEQEQKLKDSESAIASLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

The following BLAST results are available for this feature:

BLAST of Carg22670-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937756.1	6.8e-53	93.80	prefoldin subunit 1-like [Cucurbita moschata]	[more]
XP_023536940.1	6.8e-53	94.57	prefoldin subunit 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022966081.1	3.4e-52	93.02	prefoldin subunit 1 [Cucurbita maxima]	[more]
XP_022929581.1	7.7e-49	88.37	prefoldin subunit 1-like [Cucurbita moschata]	[more]
XP_023546624.1	1.0e-48	88.37	prefoldin subunit 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg22670-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07340.1	5.3e-44	74.22	PREFOLDIN 1	[more]

BLAST of Carg22670-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3SZE2\|PFD1_BOVIN	7.2e-06	31.78	Prefoldin subunit 1 OS=Bos taurus OX=9913 GN=PFDN1 PE=2 SV=1	[more]
sp\|Q9CWM4\|PFD1_MOUSE	7.2e-06	31.78	Prefoldin subunit 1 OS=Mus musculus OX=10090 GN=Pfdn1 PE=1 SV=1	[more]
sp\|Q5RAM7\|PFD1_PONAB	7.2e-06	31.78	Prefoldin subunit 1 OS=Pongo abelii OX=9601 GN=PFDN1 PE=2 SV=1	[more]
sp\|O60925\|PFD1_HUMAN	2.7e-05	30.84	Prefoldin subunit 1 OS=Homo sapiens OX=9606 GN=PFDN1 PE=1 SV=2	[more]
sp\|Q54JS0\|PFD1_DICDI	5.2e-04	23.64	Probable prefoldin subunit 1 OS=Dictyostelium discoideum OX=44689 GN=pfdn1 PE=3 ...	[more]

BLAST of Carg22670-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJF7\|A0A0A0LJF7_CUCSA	5.7e-48	86.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070850 PE=4 SV=1	[more]
tr\|A0A2I4EVP4\|A0A2I4EVP4_9ROSI	5.3e-46	82.81	prefoldin subunit 1 OS=Juglans regia OX=51240 GN=LOC108993147 PE=4 SV=1	[more]
tr\|A0A2G9GHY4\|A0A2G9GHY4_9LAMI	6.9e-46	82.81	Molecular chaperone Prefoldin, subunit 1 OS=Handroanthus impetiginosus OX=429701...	[more]
tr\|A0A2P4IPN7\|A0A2P4IPN7_QUESU	2.6e-45	82.03	Prefoldin subunit 1 OS=Quercus suber OX=58331 GN=CFP56_67478 PE=4 SV=1	[more]
tr\|A0A061FRM5\|A0A061FRM5_THECC	2.6e-45	81.25	Prefoldin 1 OS=Theobroma cacao OX=3641 GN=TCM_044384 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016272	prefoldin complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **INTERPRO**
Term	Definition
IPR009053	Prefoldin
IPR002777	PFD_beta-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22670	Carg22670	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22670-RA	Carg22670-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22670-RA.CDS.5	Carg22670-RA.CDS.5	CDS
Carg22670-RA.CDS.4	Carg22670-RA.CDS.4	CDS
Carg22670-RA.CDS.3	Carg22670-RA.CDS.3	CDS
Carg22670-RA.CDS.2	Carg22670-RA.CDS.2	CDS
Carg22670-RA.CDS.1	Carg22670-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22670-RA.exon.5	Carg22670-RA.exon.5	exon
Carg22670-RA.exon.4	Carg22670-RA.exon.4	exon
Carg22670-RA.exon.3	Carg22670-RA.exon.3	exon
Carg22670-RA.exon.2	Carg22670-RA.exon.2	exon
Carg22670-RA.exon.1	Carg22670-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..109
None	No IPR available	COILS	Coil	Coil	coord: 31..51
None	No IPR available	PANTHER	PTHR20903	PREFOLDIN SUBUNIT 1-RELATED	coord: 1..115
None	No IPR available	SUPERFAMILY	SSF46579	Prefoldin	coord: 10..108
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 13..109 e-value: 1.1E-9 score: 38.1
IPR009053	Prefoldin	GENE3D	G3DSA:1.10.287.370		coord: 8..112 e-value: 9.6E-7 score: 30.5