Carg11673 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11673
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_035 : 720042 .. 720537 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGGATAAGGTAATTTTTGTGAACTTTTCTTAGACCTTCCCCTGTTTAGGTATTGAAATCGGAAGCTGAATCCAAATCATTCTCTCTATGAAATTCTCGTTTGCCCTAATATGTTCAATTTTGAAGATGAGCTCATAATTCAACCCCGAGTTTCGTGGTTAATCTGGATTCAGCTTCTTCTTCTTATCCTCCTCTTCGCGCTTTATTGTCTCACCATCTTCGCCATTGATTTCTCCAAAATCGATACCGTCGGCAACTCCACTGCCGCCATTGCTTCTTCTTCTTCTACTTCTAATAGTCGCTTCGTTTCTGAAATTGCTCACAACCACAAGAATGTTTCTATGCACAATATCAGGATTGATTCTGATCCATCGCGGAATGCGCAGGTATGGCGTCTCTCGGCTTCATTTTTAAACCACTTGTGTACGAATGTTTGTTTGTGTTCCTGGTTATTCTGTGAACATTGACATGTTTTACAGCAATTCTTGGCTTGA

mRNA sequence

AAGAGGATAAGGTAATTTTTGTGAACTTTTCTTAGACCTTCCCCTGTTTAGGTATTGAAATCGGAAGCTGAATCCAAATCATTCTCTCTATGAAATTCTCGTTTGCCCTAATATGTTCAATTTTGAAGATGAGCTCATAATTCAACCCCGAGTTTCGTGGTTAATCTGGATTCAGCTTCTTCTTCTTATCCTCCTCTTCGCGCTTTATTGTCTCACCATCTTCGCCATTGATTTCTCCAAAATCGATACCGTCGGCAACTCCACTGCCGCCATTGCTTCTTCTTCTTCTACTTCTAATAGTCGCTTCGTTTCTGAAATTGCTCACAACCACAAGAATGTTTCTATGCACAATATCAGGATTGATTCTGATCCATCGCGGAATGCGCAGCAATTCTTGGCTTGA

Coding sequence (CDS)

ATGTTCAATTTTGAAGATGAGCTCATAATTCAACCCCGAGTTTCGTGGTTAATCTGGATTCAGCTTCTTCTTCTTATCCTCCTCTTCGCGCTTTATTGTCTCACCATCTTCGCCATTGATTTCTCCAAAATCGATACCGTCGGCAACTCCACTGCCGCCATTGCTTCTTCTTCTTCTACTTCTAATAGTCGCTTCGTTTCTGAAATTGCTCACAACCACAAGAATGTTTCTATGCACAATATCAGGATTGATTCTGATCCATCGCGGAATGCGCAGCAATTCTTGGCTTGA

Protein sequence

MFNFEDELIIQPRVSWLIWIQLLLLILLFALYCLTIFAIDFSKIDTVGNSTAAIASSSSTSNSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQQFLA

Homology

[Close]

BLAST of Carg11673 vs. NCBI nr
Match: XP_022948006.1 (uncharacterized protein LOC111451714 isoform X2 [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MFNFEDELIIQPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVGNSTAAIASSSST 60
          MFNFEDELI+QPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVGNSTAAIASSSST
Sbjct: 1  MFNFEDELILQPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVGNSTAAIASSSST 60

Query: 61 SNSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQQFL 96
          SNSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ ++
Sbjct: 61 SNSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQGWI 95

[Close]

BLAST of Carg11673 vs. NCBI nr
Match: XP_022948005.1 (uncharacterized protein LOC111451714 isoform X1 [Cucurbita moschata])

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MFNFEDELIIQPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVGNSTAAIASSSST 60
          MFNFEDELI+QPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVGNSTAAIASSSST
Sbjct: 1  MFNFEDELILQPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVGNSTAAIASSSST 60

Query: 61 SNSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ 93
          SNSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ
Sbjct: 61 SNSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ 92

[Close]

BLAST of Carg11673 vs. NCBI nr
Match: XP_023534758.1 (uncharacterized protein LOC111796230 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 75/92 (81.52%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MFNFEDELIIQPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVGNSTAAIASSSST 60
          MFNFEDELIIQPRVSWLIWI              TIFAIDFSKI+TVGNSTAAIASSSST
Sbjct: 1  MFNFEDELIIQPRVSWLIWIQLLLLILVFAFYCLTIFAIDFSKINTVGNSTAAIASSSST 60

Query: 61 SNSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ 93
          S SRFVSEIAHNHKNVSMHNI IDSDPSRNAQ
Sbjct: 61 STSRFVSEIAHNHKNVSMHNIWIDSDPSRNAQ 92

[Close]

BLAST of Carg11673 vs. NCBI nr
Match: XP_023007255.1 (uncharacterized protein LOC111499795 isoform X1 [Cucurbita maxima])

HSP 1 Score: 119.4 bits (298), Expect = 6.7e-24
Identity = 68/93 (73.12%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MFNFEDELIIQPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVGNSTAAIAS-SSS 60
          MFNFEDELIIQPRVSWLIWI              TIFAIDFSKI+T  NSTAAI S    
Sbjct: 1  MFNFEDELIIQPRVSWLIWIQLLLLILVFALYCLTIFAIDFSKINTDSNSTAAIPSXXXX 60

Query: 61 TSNSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ 93
             SRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ
Sbjct: 61 XXXSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ 93

[Close]

BLAST of Carg11673 vs. NCBI nr
Match: XP_023007256.1 (uncharacterized protein LOC111499795 isoform X2 [Cucurbita maxima])

HSP 1 Score: 119.4 bits (298), Expect = 6.7e-24
Identity = 68/93 (73.12%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MFNFEDELIIQPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVGNSTAAIAS-SSS 60
          MFNFEDELIIQPRVSWLIWI              TIFAIDFSKI+T  NSTAAI S    
Sbjct: 1  MFNFEDELIIQPRVSWLIWIQLLLLILVFALYCLTIFAIDFSKINTDSNSTAAIPSXXXX 60

Query: 61 TSNSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ 93
             SRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ
Sbjct: 61 XXXSRFVSEIAHNHKNVSMHNIRIDSDPSRNAQ 93

[Close]

BLAST of Carg11673 vs. TrEMBL
Match: tr|A0A1S3C6P8|A0A1S3C6P8_CUCME (uncharacterized protein LOC103497467 OS=Cucumis melo OX=3656 GN=LOC103497467 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.4e-15
Identity = 68/94 (72.34%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MFNFEDELIIQPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVG-NSTAAIASSSS 60
          MFNFEDELIIQP +SWLIWI   XXXXXXXXXXXTIFAIDFSK  T   NSTAAIASSSS
Sbjct: 1  MFNFEDELIIQPGISWLIWIQLLXXXXXXXXXXXTIFAIDFSKSSTADFNSTAAIASSSS 60

Query: 61 TSNSRFVSEIAHNHKNVSMH-NIRIDSDPSRNAQ 93
          T  +RF+S  AHN KN+  + NIRI  +P RNAQ
Sbjct: 61 T--TRFLSHSAHNGKNILPNPNIRIGPNPPRNAQ 92

[Close]

BLAST of Carg11673 vs. TrEMBL
Match: tr|A0A0A0LM30|A0A0A0LM30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G296040 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.9e-13
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1  MFNFEDELIIQPRVSWLIWIXXXXXXXXXXXXXXTIFAIDFSKIDTVG-NSTAAIASSSS 60
          MFNFEDELIIQP +SWLIWI              TIFA DFSK +T   NSTAAIASSSS
Sbjct: 1  MFNFEDELIIQPGISWLIWIQLLVILLIFFLCCLTIFAFDFSKSNTTDFNSTAAIASSSS 60

Query: 61 TSNSRFVSEIAHNHKNVSMH-NIRIDSDPSRNAQ 93
             +RF+S   H+ KN+  + NIRI  +P RNAQ
Sbjct: 61 P--TRFLSHSTHSGKNILPNPNIRIGPNPPRNAQ 92

The following BLAST results are available for this feature:

BLAST of Carg11673 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948006.1	1.1e-31	95.79	uncharacterized protein LOC111451714 isoform X2 [Cucurbita moschata]	[more]
XP_022948005.1	1.5e-31	98.91	uncharacterized protein LOC111451714 isoform X1 [Cucurbita moschata]	[more]
XP_023534758.1	1.4e-29	81.52	uncharacterized protein LOC111796230 [Cucurbita pepo subsp. pepo]	[more]
XP_023007255.1	6.7e-24	73.12	uncharacterized protein LOC111499795 isoform X1 [Cucurbita maxima]	[more]
XP_023007256.1	6.7e-24	73.12	uncharacterized protein LOC111499795 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg11673 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11673 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11673 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C6P8\|A0A1S3C6P8_CUCME	6.4e-15	72.34	uncharacterized protein LOC103497467 OS=Cucumis melo OX=3656 GN=LOC103497467 PE=...	[more]
tr\|A0A0A0LM30\|A0A0A0LM30_CUCSA	7.9e-13	56.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G296040 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11673-RA	Carg11673-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35771:SF1	SUBFAMILY NOT NAMED	coord: 1..79
None	No IPR available	PANTHER	PTHR35771	FAMILY NOT NAMED	coord: 1..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11673	Cla020123	Watermelon (97103) v1	carwmB1062
Carg11673	Csa2G296040	Cucumber (Chinese Long) v2	carcuB1072
Carg11673	ClCG02G013410	Watermelon (Charleston Gray)	carwcgB1033
Carg11673	CSPI02G15030	Wild cucumber (PI 183967)	carcpiB1095
Carg11673	Cucsa.250480	Cucumber (Gy14) v1	carcgyB1174
Carg11673	CmaCh02G006050	Cucurbita maxima (Rimu)	carcmaB1466
Carg11673	CmaCh20G011180	Cucurbita maxima (Rimu)	carcmaB1462
Carg11673	CmoCh02G006090	Cucurbita moschata (Rifu)	carcmoB1422
Carg11673	CmoCh20G011500	Cucurbita moschata (Rifu)	carcmoB1417
Carg11673	Lsi10G006530	Bottle gourd (USVL1VR-Ls)	carlsiB967
Carg11673	Cp4.1LG05g10710	Cucurbita pepo (Zucchini)	carcpeB1476
Carg11673	Cp4.1LG16g00280	Cucurbita pepo (Zucchini)	carcpeB1474
Carg11673	CsGy2G015030	Cucumber (Gy14) v2	carcgybB1040
Carg11673	CsaV3_2G017570	Cucumber (Chinese Long) v3	carcucB1104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11673	Cucumber (Gy14) v2	carcgybB1038
Carg11673	Cucumber (Gy14) v1	carcgyB1175
Carg11673	Cucurbita maxima (Rimu)	carcmaB1467
Carg11673	Cucurbita moschata (Rifu)	carcmoB1424
Carg11673	Cucurbita pepo (Zucchini)	carcpeB1470
Carg11673	Cucurbita pepo (Zucchini)	carcpeB1471
Carg11673	Cucurbita pepo (Zucchini)	carcpeB1472
Carg11673	Wild cucumber (PI 183967)	carcpiB1092
Carg11673	Cucumber (Chinese Long) v2	carcuB1069
Carg11673	Cucumber (Chinese Long) v3	carcucB1102
Carg11673	Bottle gourd (USVL1VR-Ls)	carlsiB962
Carg11673	Melon (DHL92) v3.5.1	carmeB1023
Carg11673	Melon (DHL92) v3.5.1	carmeB1026
Carg11673	Melon (DHL92) v3.6.1	carmedB1037
Carg11673	Melon (DHL92) v3.6.1	carmedB1039
Carg11673	Watermelon (97103) v1	carwmB1056
Carg11673	Wax gourd	carwgoB1247