Carg23597-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCCAGATTCTGTCTCATTCCTTAATCCTTCCAACATTTTCCGGCGACGAAGAATCGGGTATGAGCTTTATACCATGCTAATCTGTATCACGTCGATTAACTCTTGCTGCTAAAATTTCGACGATCTTTGATCTTGGTTTCGATTTTTATTGCGCGAATTCCTTGATTTCATTTGAAAAAATGAGCTCTGCAAATATTAATCTGTGTTTAGAGGAACTGAATTGAATTTTTAAGGTGGTACTATGATTAGCTTGATCGATGTTGGCTGCATCTGTTTGCTATATCTCCAGCACCATTAGATTCAATTTCTTTACATTGCTCTTTTTTCCCTTAGAAGTGTTGAAGATTAGCAGGACTATTCGTGAAAACAAAAATTACAGAAGAAATAACAGGGAAAAAAAGAACAAAAACCTACAATGTTCAAGTTATGGTATGAAGATTGTTTGTGATTAGATTGCTTCATGATACCATATACGCAATGTGCATTTTTGGTTCTAATTTAGTAATTGTCTGCAAGACACAGACGGTATTGGCTATTGAATACTTCTCCTTCATTGTTTAGGTCTAGTTTGATAACCATTTGGTTTTTGTTTTTAGATTTCTTAGCGTTGTGTTTGTTTTCTCCCTATTTTTTGTAACAATTTTCATGGAAAGATTTGAATTCTTAGCCAAATTCCAAAAACGAAAACATTTTTTAAAACTACTGTTTTTTTTAAGCAAAATTCTATCGTTCTGTTTCAAAATTCAAACGTCGTATTTCGAAGCAGTCTCTTACTTTATAATTAGGACCCACCTCTTCTACCTTTTAAGGTTTTAGATTTTGCTTCTTCTTTTCTATATCCCCTTTGCAAGCCAATAAGGTCCCATCTTCATGTCTAAACGTATTTCGTAGGTATTTATGGTCCCAGTGTGCTGATCTCAAGTCTTCTGGAATCCATTTCAGGTCCTCCATGCCAGTGGAAGTGCATTTGTGAGACTATTAGATGTTCTGTTTTGCCAGTTTTGAAATTTGATTCACACCTGGATCTAGTACAAGTTAGATCTTTCTTGGATGGTTATGAAACCTTTGCTCTAGGTTTTCGTGCTCTTATTCTCTTGAAGTTTGATTTGCGTTCTAAATATTGAATTGCATGTCATCCTTGTGGTGTATTTCTTACAATCCACCTATAGGAATGGAAGACTAAGAATCAATAATAATCTAATTCAAACATATGGTTCTGAATTGTTCACCTGATGTTCCTCTTACTTAATATACAATAAGGAACTTTTTCATTGAAAAAACTCCTTCATTGAGAAAAATGTACACATGAGGGTAATACAAATCATAGGCTGGGGTCTAGAAGAAAGTTCTAGTTATTTTTTGATGTCTGGATGTCATCTACATGTGCATTCCCGTATGTTGATGACGGAGTTTGTTCTGGTTTATTTATTTATTATTGTCTATTAGCACCAGGATGCACATCGATCTATAATGTGTGAGATCCCACATCGGTTAGGGAGGAGAACGAAACATCCTTTATAAGGGAGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAATCTTGAGGGGAAGTCCCGAAAGGAAAAGTCTAAAGAGAATAATATATACTAGCGGTGGGCTTGGACCATTACATAATATCATGATGGATTAGGCTGATCGTATATCTTATCTTTATGAAAGATCATACTAATCCCAGAATCAAATGAAATAAGATTATTTACTTAACAATCTAGTTTAAATACGTGAGAGACACTTGACTTGAATGACTTGTCAAAATTAATGATCTACTAAAATATCTGAGAGCTTTTTGATGAGATTGGCAGTAAGTACTAATAAGGGTAAAGCTTTCCCCTTGTTGTGAACTCTTGTCTAGTAGTCGACTGAATTCATATAGCAGGCCAAAGCAATGCAACATGGGATGACACACGTTGTGCCTAATGGTACTGCAAGGCCCCAAATTACTCAAACATATGGTAGGAGGGGGGAAAAAGGGAAAGGAGGGTAATCAGACATGAGTAAGGGGGGTGTGAGCGCGTTGTTGTTGTACGGCAAGTCAGCAAGGGGAGTGTCGTTATTCTGGGATTTGAGTACATGTAAGCTCTTTTACGAGTTGTGTGGCTAAGGCTTTGAGTAGGAGATGCTCCCAGCTCTCTCGAAGTAGCTGGAGAAGTTTGTTTCCTGTTTGTGTATTTTCCTATTGTTTAGTTCCTTGTAATCATTCGTCTTCCGAGCCATTATCAATAGAACAGTGTCTCCCCCTGTTCCATCACTGGTTTCTGGTGCATTTTGTGTTACTTAGCGTTATTGCAGGTTGTTGTTAGGGAGAGATTCCTTATAGGTACATGGTAATCTGTATATTTAGGCTAAGTTTGGAAGTAATTTAATGGTTTTTTTACCAAAAAAATGCGTGTTTTTGGCGCAAATGGTTAATCCAGAAGCACTTAAAAGTGATTTTAAGAGAGTAAAACTAAATATCAAACTGATTTGTTATTGAATACTCGGTAGTAAAGTGCTTATAATTACAATACTTGACACCCAAATGGGTATCGTATGTTGTTCACAGGAAATAATAACACCTCTAAATGGAGTTAGCAGACAAGACTGTTGGATTTTTGCTATCGCTTACCAGCTTGTCCATCTTCACTTACTATACTTTCTGGGTCATTATCCTGGTAAGTTCATCTTCCATGTTCATAGATGCTCTACCAAATGATTTCATTCGATGTACTTGATCGTGTTACTGCCGGTTAAAGTATTGATATAATTAAACTTGTCTTAACTCGTCTACTTCAAGATTGATGGGTGATTTAACCTGGTACTAGAGCGTTTCGTGAACTTCTGTAATGTCATTCTTTTTATAAATTAATATTAATTTCTACTCGTTGGATCTTCAACAAATTTTCAAACGTGCGTGCGAGAAGGAGATTGTTAGAGTATTTGATATAATTAAATTTATCATAGCTCGTGAACTTAAATTGTATTTTGCTTTGTTTAATGGCAGCCGTTTGTGGATAGTGATCACTTCATCCACAGCTATTTCTTACCACAGGAATTTGCCATCCTCATACCTGTATTTGCTGGTGTGGTACTTCTGTGCTTATTAGGCATATTTGTTGGAATTGTGATGCTCAAATCCAAAAGGAAGAAGGCATGAGGACAACTCTTTGGCTGTTCGTTTTTTTTTTTGTTTTTTTTATTCTAATGGGTCGGAGATCAAACCATTGACTTTTGTATGTTTATCCACTAAATTACGTTAAAAGCTAGCTATGTAAATATAATGTGGTTTTTTTTTTTTT TTCCAGATTCTGTCTCATTCCTTAATCCTTCCAACATTTTCCGGCGACGAAGAATCGGGAAATAATAACACCTCTAAATGGAGTTAGCAGACAAGACTGTTGGATTTTTGCTATCGCTTACCAGCTTGTCCATCTTCACTTACTATACTTTCTGGGTCATTATCCTGCCGTTTGTGGATAGTGATCACTTCATCCACAGCTATTTCTTACCACAGGAATTTGCCATCCTCATACCTGTATTTGCTGGTGTGGTACTTCTGTGCTTATTAGGCATATTTGTTGGAATTGTGATGCTCAAATCCAAAAGGAAGAAGGCATGAGGACAACTCTTTGGCTGTTCGTTTTTTTTTTTGTTTTTTTTATTCTAATGGGTCGGAGATCAAACCATTGACTTTTGTATGTTTATCCACTAAATTACGTTAAAAGCTAGCTATGTAAATATAATGTGGTTTTTTTTTTTTT ATGGAGTTAGCAGACAAGACTGTTGGATTTTTGCTATCGCTTACCAGCTTGTCCATCTTCACTTACTATACTTTCTGGGTCATTATCCTGCCGTTTGTGGATAGTGATCACTTCATCCACAGCTATTTCTTACCACAGGAATTTGCCATCCTCATACCTGTATTTGCTGGTGTGGTACTTCTGTGCTTATTAGGCATATTTGTTGGAATTGTGATGCTCAAATCCAAAAGGAAGAAGGCATGA MELADKTVGFLLSLTSLSIFTYYTFWVIILPFVDSDHFIHSYFLPQEFAILIPVFAGVVLLCLLGIFVGIVMLKSKRKKA
BLAST of Carg23597-RA vs. NCBI nr
Match: XP_022923351.1 (dolichol-phosphate mannose synthase subunit 2-like [Cucurbita moschata] >XP_022923352.1 dolichol-phosphate mannose synthase subunit 2-like [Cucurbita moschata]) HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
BLAST of Carg23597-RA vs. NCBI nr
Match: XP_023552505.1 (dolichol-phosphate mannose synthase subunit 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 151.4 bits (381), Expect = 1.3e-33 Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0
BLAST of Carg23597-RA vs. NCBI nr
Match: XP_004148753.1 (PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Cucumis sativus] >KGN55729.1 hypothetical protein Csa_3G008860 [Cucumis sativus]) HSP 1 Score: 146.0 bits (367), Expect = 5.6e-32 Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 0
BLAST of Carg23597-RA vs. NCBI nr
Match: XP_023540556.1 (dolichol-phosphate mannose synthase subunit 2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 146.0 bits (367), Expect = 5.6e-32 Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 0
BLAST of Carg23597-RA vs. NCBI nr
Match: XP_008448655.2 (PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Cucumis melo]) HSP 1 Score: 145.6 bits (366), Expect = 7.3e-32 Identity = 74/80 (92.50%), Postives = 79/80 (98.75%), Query Frame = 0
BLAST of Carg23597-RA vs. TAIR10
Match: AT1G74340.1 (dolichol phosphate-mannose biosynthesis regulatory protein-related) HSP 1 Score: 125.6 bits (314), Expect = 1.4e-29 Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 0
BLAST of Carg23597-RA vs. Swiss-Prot
Match: sp|Q9CA79|DPM2_ARATH (Dolichol-phosphate mannose synthase subunit 2 OS=Arabidopsis thaliana OX=3702 GN=DPMS2 PE=1 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 2.6e-28 Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 0
BLAST of Carg23597-RA vs. Swiss-Prot
Match: sp|Q9Z1P1|DPM2_CRIGR (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cricetulus griseus OX=10029 GN=DPM2 PE=3 SV=3) HSP 1 Score: 86.7 bits (213), Expect = 1.3e-16 Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0
BLAST of Carg23597-RA vs. Swiss-Prot
Match: sp|Q9Z324|DPM2_MOUSE (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Mus musculus OX=10090 GN=Dpm2 PE=3 SV=3) HSP 1 Score: 85.9 bits (211), Expect = 2.2e-16 Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Carg23597-RA vs. Swiss-Prot
Match: sp|O94777|DPM2_HUMAN (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Homo sapiens OX=9606 GN=DPM2 PE=1 SV=3) HSP 1 Score: 84.7 bits (208), Expect = 5.0e-16 Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 0
BLAST of Carg23597-RA vs. Swiss-Prot
Match: sp|Q9Z325|DPM2_RAT (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Rattus norvegicus OX=10116 GN=Dpm2 PE=1 SV=3) HSP 1 Score: 84.7 bits (208), Expect = 5.0e-16 Identity = 44/78 (56.41%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Carg23597-RA vs. TrEMBL
Match: tr|A0A0A0L3V9|A0A0A0L3V9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008860 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 3.7e-32 Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 0
BLAST of Carg23597-RA vs. TrEMBL
Match: tr|A0A1S3BL34|A0A1S3BL34_CUCME (dolichol phosphate-mannose biosynthesis regulatory protein OS=Cucumis melo OX=3656 GN=LOC103490758 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 4.8e-32 Identity = 74/80 (92.50%), Postives = 79/80 (98.75%), Query Frame = 0
BLAST of Carg23597-RA vs. TrEMBL
Match: tr|B9MU62|B9MU62_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G138100v3 PE=4 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 6.5e-29 Identity = 67/80 (83.75%), Postives = 75/80 (93.75%), Query Frame = 0
BLAST of Carg23597-RA vs. TrEMBL
Match: tr|A0A2K2BX66|A0A2K2BX66_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_001G138100v3 PE=4 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 6.5e-29 Identity = 67/80 (83.75%), Postives = 75/80 (93.75%), Query Frame = 0
BLAST of Carg23597-RA vs. TrEMBL
Match: tr|W9RBD6|W9RBD6_9ROSA (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Morus notabilis OX=981085 GN=L484_017751 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 8.5e-29 Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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