Carg23579-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCTACGGGGTCAAATACTAAATTCTCTCATGATTTTTTTTTCTTTTTTTCCATAATACATATATTTTTTAATCCCTTAGTACTCAATTAATTGAGTTTCTACCACCTTTCAGATACATATCTTATTCTGCGTTTTTGCTGCCATTGCGCCCCCAGTTGTGTTTCATGGGCAGTCATTGACGTAAGTTTATGGCTATCATTTCATTTTAAGCTTTTAATATGCTTCAACTTCAAAATGTTCATGAAATGAGTTTTCATTCTTCTGCCAACATATCAAAGTTTCTTCTTTAAGCTTTTTTTTTTTCTTTCTTCCATTCTGCTTGCCTTGTGCTAAATACATCCTTCAAACATTTTCAGGGGCATCTTAGCAGCAATTGACGTCTTCTCTCAACATGTCTTGGTTGGGGTAAGTTTTGAATAGATAAGAATACACGACTACAAATCTCGTAAACCATCTCTTTACTTATTTATATAGAGAAATGGAGGATCTGTTCATTTTTCACCACGATAGAATGGCGAACATAAATATCATGTTTAAAAATCGAATTTAAACTATCTTACTCTGTCTTGACTCTCTGGCTAGTCATTATTTAGGCATAAGCACATGCAGTTTCACTATAGGTTTCTTGCAATAGCAATAGTGTGGGTTTGTACGTATGTTGAGATTATTGTGTATTGCTGGAACAATGGTTTTAAATGGAGAGAGAAATTGATAAATGTATTTTGAACTGCTGGTTCTTCTAGGATAGCCACAGATACAATTAGTTACTTTTCGTCAGTATTAAATGATTGAGTAACAATAGAACCATTATTTGAACGTTGAATAAAACATAAATGTAACTGAAAATCAGATTCATATTATTTGTTAGCGGTTGTGCTCTTCCAAGTTTGACTATTTTTTTTCTTTTTATCAGATATTCTACCTCATTGGATTTGCCTTTTTTTGCTTGGAATCACTTCTTAGTTTATGGGTTCTTCAGGTAAGACATTTTTGTTCGAAAATTAATCTTATAAACACGATTTTATTTTAGAATCGTAATTTATTTTTTATTTTTTCCTTCTGCATTCTTTCCTCCTCTCAATAAATAAAATGCACAGAATATATTCATTTATAAGCTTTGTATTTTTTTGGACAGAAAATCTATTTGTATTTTAGGGGAAACAAGTGATGAAGTGAGAAAGCTTAGCTTATTATTAAGCAACGGGCGATGTTGCAGCGGTGGTTTAAATCTTTTGGGAGTATGGTCCCTGTAATTTTAGGACGTTGGTAGATTTTTTTTTTTT ATGTTCTACGGGATACATATCTTATTCTGCGTTTTTGCTGCCATTGCGCCCCCAGTTGTGTTTCATGGGCAGTCATTGACGGGCATCTTAGCAGCAATTGACGTCTTCTCTCAACATGTCTTGGTTGGGATATTCTACCTCATTGGATTTGCCTTTTTTTGCTTGGAATCACTTCTTAGTTTATGGGTTCTTCAGAAAATCTATTTGTATTTTAGGGGAAACAAGTGATGAAGTGAGAAAGCTTAGCTTATTATTAAGCAACGGGCGATGTTGCAGCGGTGGTTTAAATCTTTTGGGAGTATGGTCCCTGTAATTTTAGGACGTTGGTAGATTTTTTTTTTTT ATGTTCTACGGGATACATATCTTATTCTGCGTTTTTGCTGCCATTGCGCCCCCAGTTGTGTTTCATGGGCAGTCATTGACGGGCATCTTAGCAGCAATTGACGTCTTCTCTCAACATGTCTTGGTTGGGATATTCTACCTCATTGGATTTGCCTTTTTTTGCTTGGAATCACTTCTTAGTTTATGGGTTCTTCAGAAAATCTATTTGTATTTTAGGGGAAACAAGTGA MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSLWVLQKIYLYFRGNK
BLAST of Carg23579-RA vs. NCBI nr
Match: XP_022923600.1 (secretory carrier-associated membrane protein 4-like [Cucurbita moschata]) HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of Carg23579-RA vs. NCBI nr
Match: XP_022965309.1 (secretory carrier-associated membrane protein 4-like [Cucurbita maxima]) HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of Carg23579-RA vs. NCBI nr
Match: XP_023552124.1 (secretory carrier-associated membrane protein 4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 147.9 bits (372), Expect = 1.4e-32 Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of Carg23579-RA vs. NCBI nr
Match: XP_023540505.1 (secretory carrier-associated membrane protein 4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30 Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0
BLAST of Carg23579-RA vs. NCBI nr
Match: XP_022943283.1 (secretory carrier-associated membrane protein 4-like [Cucurbita moschata]) HSP 1 Score: 139.4 bits (350), Expect = 4.9e-30 Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 0
BLAST of Carg23579-RA vs. TAIR10
Match: AT1G32050.1 (SCAMP family protein) HSP 1 Score: 114.8 bits (286), Expect = 2.3e-26 Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0
BLAST of Carg23579-RA vs. TAIR10
Match: AT1G61250.1 (secretory carrier 3) HSP 1 Score: 109.4 bits (272), Expect = 9.8e-25 Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 0
BLAST of Carg23579-RA vs. TAIR10
Match: AT2G20840.1 (Secretory carrier membrane protein (SCAMP) family protein) HSP 1 Score: 108.6 bits (270), Expect = 1.7e-24 Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg23579-RA vs. TAIR10
Match: AT1G11180.2 (Secretory carrier membrane protein (SCAMP) family protein) HSP 1 Score: 107.1 bits (266), Expect = 4.9e-24 Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0
BLAST of Carg23579-RA vs. TAIR10
Match: AT1G03550.1 (Secretory carrier membrane protein (SCAMP) family protein) HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19 Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = 0
BLAST of Carg23579-RA vs. Swiss-Prot
Match: sp|Q6Z8F5|SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP5 PE=2 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 6.5e-26 Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = 0
BLAST of Carg23579-RA vs. Swiss-Prot
Match: sp|Q0JAI9|SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP6 PE=2 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 1.9e-25 Identity = 54/73 (73.97%), Postives = 66/73 (90.41%), Query Frame = 0
BLAST of Carg23579-RA vs. Swiss-Prot
Match: sp|Q9C6X2|SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=SCAMP4 PE=1 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 4.2e-25 Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0
BLAST of Carg23579-RA vs. Swiss-Prot
Match: sp|Q9M5P2|SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana OX=3702 GN=SCAMP3 PE=1 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 1.8e-23 Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 0
BLAST of Carg23579-RA vs. Swiss-Prot
Match: sp|Q9SKT3|SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana OX=3702 GN=SCAMP1 PE=2 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 3.0e-23 Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg23579-RA vs. TrEMBL
Match: tr|A0A0A0L3U1|A0A0A0L3U1_CUCSA (Secretory carrier-associated membrane protein OS=Cucumis sativus OX=3659 GN=Csa_3G006700 PE=3 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 5.5e-30 Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0
BLAST of Carg23579-RA vs. TrEMBL
Match: tr|A0A1S3BK39|A0A1S3BK39_CUCME (Secretory carrier-associated membrane protein OS=Cucumis melo OX=3656 GN=LOC103490740 PE=3 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 9.4e-30 Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0
BLAST of Carg23579-RA vs. TrEMBL
Match: tr|A0A2R6PHR2|A0A2R6PHR2_ACTCH (Secretory carrier-associated membrane protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc28733 PE=3 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28 Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 0
BLAST of Carg23579-RA vs. TrEMBL
Match: tr|A0A2R6Q3D3|A0A2R6Q3D3_ACTCH (Secretory carrier-associated membrane protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22723 PE=3 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 6.8e-28 Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 0
BLAST of Carg23579-RA vs. TrEMBL
Match: tr|A0A1S3VRV9|A0A1S3VRV9_VIGRR (Secretory carrier-associated membrane protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106777843 PE=3 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 2.0e-27 Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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