Carg23579 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23579
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Secretory carrier-associated membrane protein
Location	Cucurbita_argyrosperma_scaffold_235 : 145048 .. 146334 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTACGGGGTCAAATACTAAATTCTCTCATGATTTTTTTTTCTTTTTTTCCATAATACATATATTTTTTAATCCCTTAGTACTCAATTAATTGAGTTTCTACCACCTTTCAGATACATATCTTATTCTGCGTTTTTGCTGCCATTGCGCCCCCAGTTGTGTTTCATGGGCAGTCATTGACGTAAGTTTATGGCTATCATTTCATTTTAAGCTTTTAATATGCTTCAACTTCAAAATGTTCATGAAATGAGTTTTCATTCTTCTGCCAACATATCAAAGTTTCTTCTTTAAGCTTTTTTTTTTTCTTTCTTCCATTCTGCTTGCCTTGTGCTAAATACATCCTTCAAACATTTTCAGGGGCATCTTAGCAGCAATTGACGTCTTCTCTCAACATGTCTTGGTTGGGGTAAGTTTTGAATAGATAAGAATACACGACTACAAATCTCGTAAACCATCTCTTTACTTATTTATATAGAGAAATGGAGGATCTGTTCATTTTTCACCACGATAGAATGGCGAACATAAATATCATGTTTAAAAATCGAATTTAAACTATCTTACTCTGTCTTGACTCTCTGGCTAGTCATTATTTAGGCATAAGCACATGCAGTTTCACTATAGGTTTCTTGCAATAGCAATAGTGTGGGTTTGTACGTATGTTGAGATTATTGTGTATTGCTGGAACAATGGTTTTAAATGGAGAGAGAAATTGATAAATGTATTTTGAACTGCTGGTTCTTCTAGGATAGCCACAGATACAATTAGTTACTTTTCGTCAGTATTAAATGATTGAGTAACAATAGAACCATTATTTGAACGTTGAATAAAACATAAATGTAACTGAAAATCAGATTCATATTATTTGTTAGCGGTTGTGCTCTTCCAAGTTTGACTATTTTTTTTCTTTTTATCAGATATTCTACCTCATTGGATTTGCCTTTTTTTGCTTGGAATCACTTCTTAGTTTATGGGTTCTTCAGGTAAGACATTTTTGTTCGAAAATTAATCTTATAAACACGATTTTATTTTAGAATCGTAATTTATTTTTTATTTTTTCCTTCTGCATTCTTTCCTCCTCTCAATAAATAAAATGCACAGAATATATTCATTTATAAGCTTTGTATTTTTTTGGACAGAAAATCTATTTGTATTTTAGGGGAAACAAGTGATGAAGTGAGAAAGCTTAGCTTATTATTAAGCAACGGGCGATGTTGCAGCGGTGGTTTAAATCTTTTGGGAGTATGGTCCCTGTAATTTTAGGACGTTGGTAGATTTTTTTTTTTT

mRNA sequence

ATGTTCTACGGGATACATATCTTATTCTGCGTTTTTGCTGCCATTGCGCCCCCAGTTGTGTTTCATGGGCAGTCATTGACGGGCATCTTAGCAGCAATTGACGTCTTCTCTCAACATGTCTTGGTTGGGATATTCTACCTCATTGGATTTGCCTTTTTTTGCTTGGAATCACTTCTTAGTTTATGGGTTCTTCAGAAAATCTATTTGTATTTTAGGGGAAACAAGTGATGAAGTGAGAAAGCTTAGCTTATTATTAAGCAACGGGCGATGTTGCAGCGGTGGTTTAAATCTTTTGGGAGTATGGTCCCTGTAATTTTAGGACGTTGGTAGATTTTTTTTTTTT

Coding sequence (CDS)

ATGTTCTACGGGATACATATCTTATTCTGCGTTTTTGCTGCCATTGCGCCCCCAGTTGTGTTTCATGGGCAGTCATTGACGGGCATCTTAGCAGCAATTGACGTCTTCTCTCAACATGTCTTGGTTGGGATATTCTACCTCATTGGATTTGCCTTTTTTTGCTTGGAATCACTTCTTAGTTTATGGGTTCTTCAGAAAATCTATTTGTATTTTAGGGGAAACAAGTGA

Protein sequence

MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSLWVLQKIYLYFRGNK

Homology

[Close]

BLAST of Carg23579 vs. NCBI nr
Match: XP_022923600.1 (secretory carrier-associated membrane protein 4-like [Cucurbita moschata])

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS
Sbjct: 195 MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 254

Query: 61  LWVLQKIYLYFRGNK 76
           LWVLQKIYLYFRGNK
Sbjct: 255 LWVLQKIYLYFRGNK 269

[Close]

BLAST of Carg23579 vs. NCBI nr
Match: XP_022965309.1 (secretory carrier-associated membrane protein 4-like [Cucurbita maxima])

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS
Sbjct: 195 MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 254

Query: 61  LWVLQKIYLYFRGNK 76
           LWVLQKIYLYFRGNK
Sbjct: 255 LWVLQKIYLYFRGNK 269

[Close]

BLAST of Carg23579 vs. NCBI nr
Match: XP_023552124.1 (secretory carrier-associated membrane protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-32
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVG+FYLIGFAFFCLESLLS
Sbjct: 195 MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGVFYLIGFAFFCLESLLS 254

Query: 61  LWVLQKIYLYFRGNK 76
           LWVLQKIYLYFRGNK
Sbjct: 255 LWVLQKIYLYFRGNK 269

[Close]

BLAST of Carg23579 vs. NCBI nr
Match: XP_023540505.1 (secretory carrier-associated membrane protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           MFY +HILFC+FAAIAPPVVFHGQSLTGILAAIDVFS+HVLVGIFYLIGF FFCLESLLS
Sbjct: 195 MFYLLHILFCIFAAIAPPVVFHGQSLTGILAAIDVFSEHVLVGIFYLIGFGFFCLESLLS 254

Query: 61  LWVLQKIYLYFRGNK 76
           LWVLQKIYLYFRGNK
Sbjct: 255 LWVLQKIYLYFRGNK 269

[Close]

BLAST of Carg23579 vs. NCBI nr
Match: XP_022943283.1 (secretory carrier-associated membrane protein 4-like [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 4.9e-30
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           MFY +HILFC+FAAIAPPVVFHGQSLTGILAAIDVFS HVLVGIFYLIGF FFCLESLLS
Sbjct: 195 MFYLLHILFCIFAAIAPPVVFHGQSLTGILAAIDVFSAHVLVGIFYLIGFGFFCLESLLS 254

Query: 61  LWVLQKIYLYFRGNK 76
           LWVLQKIYLYFRGNK
Sbjct: 255 LWVLQKIYLYFRGNK 269

[Close]

BLAST of Carg23579 vs. TAIR10
Match: AT1G32050.1 (SCAMP family protein)

HSP 1 Score: 114.8 bits (286), Expect = 2.3e-26
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 3   YGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSLW 62
           Y IHI FC+ AAIAPP+ FHG+SLTG+LAAIDV S  +L GIFY IGF  FCLESLLSLW
Sbjct: 192 YLIHIGFCIVAAIAPPIFFHGKSLTGVLAAIDVISDSLLAGIFYFIGFGLFCLESLLSLW 251

Query: 63  VLQKIYLYFRGNK 76
           VLQKIYLYFRGNK
Sbjct: 252 VLQKIYLYFRGNK 264

[Close]

BLAST of Carg23579 vs. TAIR10
Match: AT1G61250.1 (secretory carrier 3)

HSP 1 Score: 109.4 bits (272), Expect = 9.8e-25
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           +FY +HI FCVFAA+APPVVF G+SL GIL AIDV S   +VGIFY IGFAFFCLES++S
Sbjct: 197 LFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIVGIFYFIGFAFFCLESVVS 256

Query: 61  LWVLQKIYLYFRGN 75
           +WV+Q++Y+YFRG+
Sbjct: 257 IWVIQQVYMYFRGS 270

[Close]

BLAST of Carg23579 vs. TAIR10
Match: AT2G20840.1 (Secretory carrier membrane protein (SCAMP) family protein)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-24
Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 3   YGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSLW 62
           Y  HI FCVFAA+APP++F G+SLTGIL AIDV S ++LVGIFY IGF FFCLESL+S+W
Sbjct: 192 YLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFYFIGFGFFCLESLVSIW 251

Query: 63  VLQKIYLYFRGN 75
           V+Q++Y+YFRG+
Sbjct: 252 VIQQVYMYFRGS 263

[Close]

BLAST of Carg23579 vs. TAIR10
Match: AT1G11180.2 (Secretory carrier membrane protein (SCAMP) family protein)

HSP 1 Score: 107.1 bits (266), Expect = 4.9e-24
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           +FY +HILFC+FAA+APP+VF G+SL GIL AIDV S   LVGIFY IGF  FCLES++S
Sbjct: 212 LFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQALVGIFYFIGFGLFCLESVVS 271

Query: 61  LWVLQKIYLYFRGN 75
           +WV+Q++Y+YFRG+
Sbjct: 272 IWVIQQVYMYFRGS 285

[Close]

BLAST of Carg23579 vs. TAIR10
Match: AT1G03550.1 (Secretory carrier membrane protein (SCAMP) family protein)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2   FYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSL 61
           FY  HI FC FAA+APPV+F G+SLTG L AI++ + +  VGI Y IG  FFC+E+LL++
Sbjct: 192 FYVFHIAFCGFAAVAPPVIFQGKSLTGFLPAIELLTTNAAVGIMYFIGAGFFCIETLLNI 251

Query: 62  WVLQKIYLYFRGN 75
           WV+Q++Y YFRG+
Sbjct: 252 WVIQQVYAYFRGS 264

[Close]

BLAST of Carg23579 vs. Swiss-Prot
Match: sp|Q6Z8F5|SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.5e-26
Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 3   YGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSLW 62
           Y +HI FCVFAAIAPPV+F G+SLTGILAAID FS H +VGIFY +GFA FCLE+L+S+W
Sbjct: 209 YMLHIAFCVFAAIAPPVIFRGKSLTGILAAIDTFSDHAIVGIFYFVGFALFCLETLVSIW 268

Query: 63  VLQKIYLYFRGNK 76
           VLQK+Y+YFRG+K
Sbjct: 269 VLQKVYMYFRGHK 281

[Close]

BLAST of Carg23579 vs. Swiss-Prot
Match: sp|Q0JAI9|SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-25
Identity = 54/73 (73.97%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 3   YGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSLW 62
           Y IHI FC+ AAIAPP+VFHG+SLTGILAAID FS+HV++GIFY +GFA FCLE+LLS+ 
Sbjct: 201 YLIHIGFCIIAAIAPPIVFHGKSLTGILAAIDTFSEHVIIGIFYFVGFALFCLETLLSIG 260

Query: 63  VLQKIYLYFRGNK 76
           VLQ++Y+YFRGNK
Sbjct: 261 VLQRVYMYFRGNK 273

[Close]

BLAST of Carg23579 vs. Swiss-Prot
Match: sp|Q9C6X2|SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=SCAMP4 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-25
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 3   YGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSLW 62
           Y IHI FC+ AAIAPP+ FHG+SLTG+LAAIDV S  +L GIFY IGF  FCLESLLSLW
Sbjct: 192 YLIHIGFCIVAAIAPPIFFHGKSLTGVLAAIDVISDSLLAGIFYFIGFGLFCLESLLSLW 251

Query: 63  VLQKIYLYFRGNK 76
           VLQKIYLYFRGNK
Sbjct: 252 VLQKIYLYFRGNK 264

[Close]

BLAST of Carg23579 vs. Swiss-Prot
Match: sp|Q9M5P2|SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana OX=3702 GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-23
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           +FY +HI FCVFAA+APPVVF G+SL GIL AIDV S   +VGIFY IGFAFFCLES++S
Sbjct: 197 LFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIVGIFYFIGFAFFCLESVVS 256

Query: 61  LWVLQKIYLYFRGN 75
           +WV+Q++Y+YFRG+
Sbjct: 257 IWVIQQVYMYFRGS 270

[Close]

BLAST of Carg23579 vs. Swiss-Prot
Match: sp|Q9SKT3|SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana OX=3702 GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-23
Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 3   YGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSLW 62
           Y  HI FCVFAA+APP++F G+SLTGIL AIDV S ++LVGIFY IGF FFCLESL+S+W
Sbjct: 192 YLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFYFIGFGFFCLESLVSIW 251

Query: 63  VLQKIYLYFRGN 75
           V+Q++Y+YFRG+
Sbjct: 252 VIQQVYMYFRGS 263

[Close]

BLAST of Carg23579 vs. TrEMBL
Match: tr|A0A0A0L3U1|A0A0A0L3U1_CUCSA (Secretory carrier-associated membrane protein OS=Cucumis sativus OX=3659 GN=Csa_3G006700 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.5e-30
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           MFY +HI FC+FAAIAPPVVFHGQSLTGILAAIDVFS+HVLVGIFYLIGF FFCLESLLS
Sbjct: 195 MFYLLHIAFCIFAAIAPPVVFHGQSLTGILAAIDVFSEHVLVGIFYLIGFGFFCLESLLS 254

Query: 61  LWVLQKIYLYFRGNK 76
           LWVLQKIYLYFRGNK
Sbjct: 255 LWVLQKIYLYFRGNK 269

[Close]

BLAST of Carg23579 vs. TrEMBL
Match: tr|A0A1S3BK39|A0A1S3BK39_CUCME (Secretory carrier-associated membrane protein OS=Cucumis melo OX=3656 GN=LOC103490740 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 9.4e-30
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           MFY +HI FC+FAAIAPPVVFHGQSLTGILAAIDVFS HVLVGIFYLIGF FFCLESLLS
Sbjct: 195 MFYLLHIAFCIFAAIAPPVVFHGQSLTGILAAIDVFSDHVLVGIFYLIGFGFFCLESLLS 254

Query: 61  LWVLQKIYLYFRGNK 76
           LWVLQKIYLYFRGNK
Sbjct: 255 LWVLQKIYLYFRGNK 269

[Close]

BLAST of Carg23579 vs. TrEMBL
Match: tr|A0A2R6PHR2|A0A2R6PHR2_ACTCH (Secretory carrier-associated membrane protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc28733 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           MFY IHI FC+FAAIAPP++FHG+S TGILAAIDVFS HVLVGIFYLIGFA FCLESLLS
Sbjct: 194 MFYLIHIGFCIFAAIAPPIIFHGKSFTGILAAIDVFSDHVLVGIFYLIGFALFCLESLLS 253

Query: 61  LWVLQKIYLYFRGNK 76
           LWVLQKIYLYFRGNK
Sbjct: 254 LWVLQKIYLYFRGNK 268

[Close]

BLAST of Carg23579 vs. TrEMBL
Match: tr|A0A2R6Q3D3|A0A2R6Q3D3_ACTCH (Secretory carrier-associated membrane protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22723 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.8e-28
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           MFY IHI FC+FAAIAPP+VFHG+S TGILAA+DVF+ HVLVGIFYLIGFA FCLESLLS
Sbjct: 256 MFYLIHIGFCIFAAIAPPIVFHGKSFTGILAAVDVFADHVLVGIFYLIGFALFCLESLLS 315

Query: 61  LWVLQKIYLYFRGNK 76
           LWVLQKIYLYFRGNK
Sbjct: 316 LWVLQKIYLYFRGNK 330

[Close]

BLAST of Carg23579 vs. TrEMBL
Match: tr|A0A1S3VRV9|A0A1S3VRV9_VIGRR (Secretory carrier-associated membrane protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106777843 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-27
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1   MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLS 60
           MFY +HI FC+FAAIAPPVVFHG+SLTGILAAIDVFS HVLVGIFYLIGF  FCLE+LLS
Sbjct: 188 MFYLLHIAFCIFAAIAPPVVFHGKSLTGILAAIDVFSDHVLVGIFYLIGFGMFCLEALLS 247

Query: 61  LWVLQKIYLYFRGNK 76
           LWVLQKIY+YFRG+K
Sbjct: 248 LWVLQKIYMYFRGHK 262

The following BLAST results are available for this feature:

BLAST of Carg23579 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923600.1	1.1e-32	100.00	secretory carrier-associated membrane protein 4-like [Cucurbita moschata]	[more]
XP_022965309.1	1.1e-32	100.00	secretory carrier-associated membrane protein 4-like [Cucurbita maxima]	[more]
XP_023552124.1	1.4e-32	98.67	secretory carrier-associated membrane protein 4-like [Cucurbita pepo subsp. pepo...	[more]
XP_023540505.1	2.2e-30	93.33	secretory carrier-associated membrane protein 4-like [Cucurbita pepo subsp. pepo...	[more]
XP_022943283.1	4.9e-30	93.33	secretory carrier-associated membrane protein 4-like [Cucurbita moschata]	[more]

BLAST of Carg23579 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32050.1	2.3e-26	78.08	SCAMP family protein	[more]
AT1G61250.1	9.8e-25	68.92	secretory carrier 3	[more]
AT2G20840.1	1.7e-24	69.44	Secretory carrier membrane protein (SCAMP) family protein	[more]
AT1G11180.2	4.9e-24	66.22	Secretory carrier membrane protein (SCAMP) family protein	[more]
AT1G03550.1	1.2e-19	57.53	Secretory carrier membrane protein (SCAMP) family protein	[more]

BLAST of Carg23579 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6Z8F5\|SCAM5_ORYSJ	6.5e-26	73.97	Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica ...	[more]
sp\|Q0JAI9\|SCAM6_ORYSJ	1.9e-25	73.97	Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica ...	[more]
sp\|Q9C6X2\|SCAM4_ARATH	4.2e-25	78.08	Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9M5P2\|SCAM3_ARATH	1.8e-23	68.92	Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9SKT3\|SCAM1_ARATH	3.0e-23	69.44	Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg23579 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3U1\|A0A0A0L3U1_CUCSA	5.5e-30	92.00	Secretory carrier-associated membrane protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
tr\|A0A1S3BK39\|A0A1S3BK39_CUCME	9.4e-30	92.00	Secretory carrier-associated membrane protein OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A2R6PHR2\|A0A2R6PHR2_ACTCH	3.0e-28	88.00	Secretory carrier-associated membrane protein OS=Actinidia chinensis var. chinen...	[more]
tr\|A0A2R6Q3D3\|A0A2R6Q3D3_ACTCH	6.8e-28	86.67	Secretory carrier-associated membrane protein OS=Actinidia chinensis var. chinen...	[more]
tr\|A0A1S3VRV9\|A0A1S3VRV9_VIGRR	2.0e-27	85.33	Secretory carrier-associated membrane protein OS=Vigna radiata var. radiata OX=3...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport

Vocabulary: **INTERPRO**
Term	Definition
IPR007273	SCAMP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23579-RA	Carg23579-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007273	SCAMP	PFAM	PF04144	SCAMP	coord: 1..73 e-value: 1.1E-14 score: 55.0
IPR007273	SCAMP	PANTHER	PTHR10687	SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP	coord: 1..75
None	No IPR available	PANTHER	PTHR10687:SF15	SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 4	coord: 1..75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23579	Cla97C10G185810	Watermelon (97103) v2	carwmbB1107
Carg23579	Bhi07G000833	Wax gourd	carwgoB1232

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23579	Carg23415	Silver-seed gourd	carcarB651

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23579	Wax gourd	carwgoB1231
Carg23579	Silver-seed gourd	carcarB613
Carg23579	Cucumber (Gy14) v2	carcgybB1033
Carg23579	Cucumber (Gy14) v1	carcgyB1164
Carg23579	Cucurbita maxima (Rimu)	carcmaB1453
Carg23579	Cucurbita maxima (Rimu)	carcmaB1454
Carg23579	Cucurbita moschata (Rifu)	carcmoB1407
Carg23579	Cucurbita moschata (Rifu)	carcmoB1408
Carg23579	Cucurbita moschata (Rifu)	carcmoB1409
Carg23579	Cucurbita pepo (Zucchini)	carcpeB1461
Carg23579	Cucurbita pepo (Zucchini)	carcpeB1462
Carg23579	Cucurbita pepo (Zucchini)	carcpeB1463
Carg23579	Wild cucumber (PI 183967)	carcpiB1085
Carg23579	Cucumber (Chinese Long) v2	carcuB1064
Carg23579	Cucumber (Chinese Long) v3	carcucB1097
Carg23579	Bottle gourd (USVL1VR-Ls)	carlsiB957
Carg23579	Bottle gourd (USVL1VR-Ls)	carlsiB958
Carg23579	Melon (DHL92) v3.5.1	carmeB1017
Carg23579	Melon (DHL92) v3.6.1	carmedB1029
Carg23579	Watermelon (Charleston Gray)	carwcgB1021
Carg23579	Watermelon (97103) v1	carwmB1049