Carg23596-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCGACAAGCAACCGATTAAGTTAGACGACGAACAAATTGCGGAGTTGAGGGAAATCTTTCGGTCGTTCGATCGGAACAACGACGGGAGTTTGACTCAACTCGAACTCGGATCGCTTTTACGATCACTTGGTTTGAAGCCGAGTCCGGATCAGCTTGAGAATTTAATAATGAAGGCCGATACGAACAGCAATGGATTAGTGGAATTTTCAGAGTTCGTAGCTCTGGCGGAGCCGGAGCTGGTATCGGCAAAGTGCCCTTACACAGAGGAGCAATTAAAGCAGCTATTTAGGATGTTTGACAGAGATGGGAATGGGTTTATCACTGCGGCGGAGTTGGCTCACTCGATGGCCAAACTCGGCCACGCTCTCACGGCGGAGGAGCTCACCGGAATGATCAGGGAAGCCGATACCGACGGCGATGGCAGAATCAATTTTCAAGAGTTCTCTCGGGCAATTACTTCTGCTGCATTTGATAATTCCTGGGCTTGATCATTTTGCTGGTATCTCTCTCTCTCTCTCTCATTGGAAAACTTGCTGCAATTTTCTTTCAATTGAGTTCTAAGAGTTCATAAAGGATTTTGATTCACATGTTGGGTTAGTATAAGACATTGAGATTTGAATGTCTGAGCATACATTTGCTACATATGTTTACCATATACTTCTGTAATGTTAGCATAAAATTTGCATCTTAGATTATACTGATCTAGAGCTTTGAAGCCATATCTTTAGTTGTCCATTACACCTTATCAACCGTGAGTATTTGTAACGATTCAAGGCTACCGCTAGCAAATATTGTCTGCTTTGACTCGTTATGTATTGTCGTCAGCTTTACAGTTTTTAAAACGTGTCTAATAGGGAGAGATTTCCATACCTTTACAAAGAATGTTTCGTTCCCCTCTCCAACCTGTGTGAGATCTCACAATCCACCCCCTTTGGGGCCCAGAGTCGCACACTGCTCAGTGTCTGGCTCTGATATCATTTGTAACAGTTCAAGCCCACCGCTAGCGGATATTGTCCGCTTTGGCCTGTTACGTATCACCGTCAGCCTCACGATTTTTAAAACGTGTCTAATAGGTGAGGTCTCCCACACCCTTGTAAGGAATGTTTTGTCCCCCTCTCCAACCAGTGTGAGATCTCACAATCCACCCCCTTTGGGGCCTAGAGTCGCACACTGCTCAGTGTCCGGCTCTGATACCATTTGTAACAGTTCAAGCCCACCGCTAGTAGATATTGTCCGCTTTGACATGTTACGTATCACCGTCAGCTTCACGATTTTTAAAACGCGTCTAATAGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCGTTTCATTCTCCATCCGATGTGAGATCTAATACGGAGTCAGTCCCTGTTGAAACCCTTTCATATCTAGCGTGTTTGCTCAGAAGTAGTTTATTCTTTTACCACAGTGCAAGTTTCTTTTGGTCTATAAATGATTTGTTTTAGAAATTCTCGACGAGGTTTAATTGATTAATGCAGCTTGGATCATGCATTGTCAAAAATGTTAGCAGTGTTATAGAAACTAGTGGCAACAATTTGAGCATGAAAAACTAAGGTGTGTGCCTGTAAATCTTTTTGCAGTGACTGGAAACAAACAGCAAATGGGTAATATTTGGACGGCAGATGACTGTAACCAACATGACGATCTTGTCAAGAAATTGAAAATGGTTTATGGGTTAAGTTTTGAATGTTGA ATGAGCGACAAGCAACCGATTAAGTTAGACGACGAACAAATTGCGGAGTTGAGGGAAATCTTTCGGTCGTTCGATCGGAACAACGACGGGAGTTTGACTCAACTCGAACTCGGATCGCTTTTACGATCACTTGGTTTGAAGCCGAGTCCGGATCAGCTTGAGAATTTAATAATGAAGGCCGATACGAACAGCAATGGATTAGTGGAATTTTCAGAGTTCGTAGCTCTGGCGGAGCCGGAGCTGTGGCAACAATTTGAGCATGAAAAACTAAGGTGTGTGCCTGTAAATCTTTTTGCAGTGACTGGAAACAAACAGCAAATGGGTAATATTTGGACGGCAGATGACTGTAACCAACATGACGATCTTGTCAAGAAATTGAAAATGGTTTATGGGTTAAGTTTTGAATGTTGA ATGAGCGACAAGCAACCGATTAAGTTAGACGACGAACAAATTGCGGAGTTGAGGGAAATCTTTCGGTCGTTCGATCGGAACAACGACGGGAGTTTGACTCAACTCGAACTCGGATCGCTTTTACGATCACTTGGTTTGAAGCCGAGTCCGGATCAGCTTGAGAATTTAATAATGAAGGCCGATACGAACAGCAATGGATTAGTGGAATTTTCAGAGTTCGTAGCTCTGGCGGAGCCGGAGCTGTGGCAACAATTTGAGCATGAAAAACTAAGGTGTGTGCCTGTAAATCTTTTTGCAGTGACTGGAAACAAACAGCAAATGGGTAATATTTGGACGGCAGATGACTGTAACCAACATGACGATCTTGTCAAGAAATTGAAAATGGTTTATGGGTTAAGTTTTGAATGTTGA MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPELWQQFEHEKLRCVPVNLFAVTGNKQQMGNIWTADDCNQHDDLVKKLKMVYGLSFEC
BLAST of Carg23596-RA vs. NCBI nr
Match: XP_022923350.1 (probable calcium-binding protein CML18 [Cucurbita moschata] >XP_022965322.1 probable calcium-binding protein CML18 [Cucurbita maxima] >XP_022965323.1 probable calcium-binding protein CML18 [Cucurbita maxima] >XP_022965324.1 probable calcium-binding protein CML18 [Cucurbita maxima] >XP_023552506.1 probable calcium-binding protein CML18 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg23596-RA vs. NCBI nr
Match: XP_008448654.1 (PREDICTED: probable calcium-binding protein CML18 [Cucumis melo]) HSP 1 Score: 157.1 bits (396), Expect = 4.1e-35 Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg23596-RA vs. NCBI nr
Match: XP_022145375.1 (probable calcium-binding protein CML18 [Momordica charantia]) HSP 1 Score: 156.0 bits (393), Expect = 9.2e-35 Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg23596-RA vs. NCBI nr
Match: XP_022924802.1 (probable calcium-binding protein CML18 [Cucurbita moschata] >XP_023540544.1 probable calcium-binding protein CML18 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34 Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg23596-RA vs. NCBI nr
Match: XP_004148765.1 (PREDICTED: probable calcium-binding protein CML18 [Cucumis sativus] >KGN55728.1 hypothetical protein Csa_3G008850 [Cucumis sativus]) HSP 1 Score: 153.3 bits (386), Expect = 5.9e-34 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg23596-RA vs. TAIR10
Match: AT1G32250.1 (Calcium-binding EF-hand family protein) HSP 1 Score: 124.4 bits (311), Expect = 5.4e-29 Identity = 65/81 (80.25%), Postives = 68/81 (83.95%), Query Frame = 0
BLAST of Carg23596-RA vs. TAIR10
Match: AT3G03000.1 (EF hand calcium-binding protein family) HSP 1 Score: 124.4 bits (311), Expect = 5.4e-29 Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0
BLAST of Carg23596-RA vs. TAIR10
Match: AT1G18530.1 (EF hand calcium-binding protein family) HSP 1 Score: 78.2 bits (191), Expect = 4.4e-15 Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 0
BLAST of Carg23596-RA vs. TAIR10
Match: AT3G25600.1 (Calcium-binding EF-hand family protein) HSP 1 Score: 76.6 bits (187), Expect = 1.3e-14 Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 0
BLAST of Carg23596-RA vs. TAIR10
Match: AT2G41100.1 (Calcium-binding EF hand family protein) HSP 1 Score: 74.3 bits (181), Expect = 6.4e-14 Identity = 33/69 (47.83%), Postives = 52/69 (75.36%), Query Frame = 0
BLAST of Carg23596-RA vs. Swiss-Prot
Match: sp|Q9LQN4|CML17_ARATH (Probable calcium-binding protein CML17 OS=Arabidopsis thaliana OX=3702 GN=CML17 PE=2 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 9.7e-28 Identity = 65/81 (80.25%), Postives = 68/81 (83.95%), Query Frame = 0
BLAST of Carg23596-RA vs. Swiss-Prot
Match: sp|Q9M8U1|CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 9.7e-28 Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0
BLAST of Carg23596-RA vs. Swiss-Prot
Match: sp|Q9AWK2|CML11_ORYSJ (Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26 Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0
BLAST of Carg23596-RA vs. Swiss-Prot
Match: sp|Q6L5F4|CML14_ORYSJ (Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 3.2e-15 Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 0
BLAST of Carg23596-RA vs. Swiss-Prot
Match: sp|Q9FZ75|CML15_ARATH (Probable calcium-binding protein CML15 OS=Arabidopsis thaliana OX=3702 GN=CML15 PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 7.9e-14 Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 0
BLAST of Carg23596-RA vs. TrEMBL
Match: tr|A0A1S3BKU3|A0A1S3BKU3_CUCME (probable calcium-binding protein CML18 OS=Cucumis melo OX=3656 GN=LOC103490757 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 2.7e-35 Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg23596-RA vs. TrEMBL
Match: tr|A0A0A0L1S8|A0A0A0L1S8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008850 PE=4 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 3.9e-34 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg23596-RA vs. TrEMBL
Match: tr|A0A2H5PYP1|A0A2H5PYP1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_179900 PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31 Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 0
BLAST of Carg23596-RA vs. TrEMBL
Match: tr|A0A067EGL1|A0A067EGL1_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g037787mg PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31 Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 0
BLAST of Carg23596-RA vs. TrEMBL
Match: tr|M5WC89|M5WC89_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G029500 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31 Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|