Carg23596 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23596
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Calmodulin, putative
Location	Cucurbita_argyrosperma_scaffold_235 : 246168 .. 247886 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGACAAGCAACCGATTAAGTTAGACGACGAACAAATTGCGGAGTTGAGGGAAATCTTTCGGTCGTTCGATCGGAACAACGACGGGAGTTTGACTCAACTCGAACTCGGATCGCTTTTACGATCACTTGGTTTGAAGCCGAGTCCGGATCAGCTTGAGAATTTAATAATGAAGGCCGATACGAACAGCAATGGATTAGTGGAATTTTCAGAGTTCGTAGCTCTGGCGGAGCCGGAGCTGGTATCGGCAAAGTGCCCTTACACAGAGGAGCAATTAAAGCAGCTATTTAGGATGTTTGACAGAGATGGGAATGGGTTTATCACTGCGGCGGAGTTGGCTCACTCGATGGCCAAACTCGGCCACGCTCTCACGGCGGAGGAGCTCACCGGAATGATCAGGGAAGCCGATACCGACGGCGATGGCAGAATCAATTTTCAAGAGTTCTCTCGGGCAATTACTTCTGCTGCATTTGATAATTCCTGGGCTTGATCATTTTGCTGGTATCTCTCTCTCTCTCTCTCATTGGAAAACTTGCTGCAATTTTCTTTCAATTGAGTTCTAAGAGTTCATAAAGGATTTTGATTCACATGTTGGGTTAGTATAAGACATTGAGATTTGAATGTCTGAGCATACATTTGCTACATATGTTTACCATATACTTCTGTAATGTTAGCATAAAATTTGCATCTTAGATTATACTGATCTAGAGCTTTGAAGCCATATCTTTAGTTGTCCATTACACCTTATCAACCGTGAGTATTTGTAACGATTCAAGGCTACCGCTAGCAAATATTGTCTGCTTTGACTCGTTATGTATTGTCGTCAGCTTTACAGTTTTTAAAACGTGTCTAATAGGGAGAGATTTCCATACCTTTACAAAGAATGTTTCGTTCCCCTCTCCAACCTGTGTGAGATCTCACAATCCACCCCCTTTGGGGCCCAGAGTCGCACACTGCTCAGTGTCTGGCTCTGATATCATTTGTAACAGTTCAAGCCCACCGCTAGCGGATATTGTCCGCTTTGGCCTGTTACGTATCACCGTCAGCCTCACGATTTTTAAAACGTGTCTAATAGGTGAGGTCTCCCACACCCTTGTAAGGAATGTTTTGTCCCCCTCTCCAACCAGTGTGAGATCTCACAATCCACCCCCTTTGGGGCCTAGAGTCGCACACTGCTCAGTGTCCGGCTCTGATACCATTTGTAACAGTTCAAGCCCACCGCTAGTAGATATTGTCCGCTTTGACATGTTACGTATCACCGTCAGCTTCACGATTTTTAAAACGCGTCTAATAGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCGTTTCATTCTCCATCCGATGTGAGATCTAATACGGAGTCAGTCCCTGTTGAAACCCTTTCATATCTAGCGTGTTTGCTCAGAAGTAGTTTATTCTTTTACCACAGTGCAAGTTTCTTTTGGTCTATAAATGATTTGTTTTAGAAATTCTCGACGAGGTTTAATTGATTAATGCAGCTTGGATCATGCATTGTCAAAAATGTTAGCAGTGTTATAGAAACTAGTGGCAACAATTTGAGCATGAAAAACTAAGGTGTGTGCCTGTAAATCTTTTTGCAGTGACTGGAAACAAACAGCAAATGGGTAATATTTGGACGGCAGATGACTGTAACCAACATGACGATCTTGTCAAGAAATTGAAAATGGTTTATGGGTTAAGTTTTGAATGTTGA

mRNA sequence

ATGAGCGACAAGCAACCGATTAAGTTAGACGACGAACAAATTGCGGAGTTGAGGGAAATCTTTCGGTCGTTCGATCGGAACAACGACGGGAGTTTGACTCAACTCGAACTCGGATCGCTTTTACGATCACTTGGTTTGAAGCCGAGTCCGGATCAGCTTGAGAATTTAATAATGAAGGCCGATACGAACAGCAATGGATTAGTGGAATTTTCAGAGTTCGTAGCTCTGGCGGAGCCGGAGCTGTGGCAACAATTTGAGCATGAAAAACTAAGGTGTGTGCCTGTAAATCTTTTTGCAGTGACTGGAAACAAACAGCAAATGGGTAATATTTGGACGGCAGATGACTGTAACCAACATGACGATCTTGTCAAGAAATTGAAAATGGTTTATGGGTTAAGTTTTGAATGTTGA

Coding sequence (CDS)

ATGAGCGACAAGCAACCGATTAAGTTAGACGACGAACAAATTGCGGAGTTGAGGGAAATCTTTCGGTCGTTCGATCGGAACAACGACGGGAGTTTGACTCAACTCGAACTCGGATCGCTTTTACGATCACTTGGTTTGAAGCCGAGTCCGGATCAGCTTGAGAATTTAATAATGAAGGCCGATACGAACAGCAATGGATTAGTGGAATTTTCAGAGTTCGTAGCTCTGGCGGAGCCGGAGCTGTGGCAACAATTTGAGCATGAAAAACTAAGGTGTGTGCCTGTAAATCTTTTTGCAGTGACTGGAAACAAACAGCAAATGGGTAATATTTGGACGGCAGATGACTGTAACCAACATGACGATCTTGTCAAGAAATTGAAAATGGTTTATGGGTTAAGTTTTGAATGTTGA

Protein sequence

MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFSEFVALAEPELWQQFEHEKLRCVPVNLFAVTGNKQQMGNIWTADDCNQHDDLVKKLKMVYGLSFEC

Homology

[Close]

BLAST of Carg23596 vs. NCBI nr
Match: XP_022923350.1 (probable calcium-binding protein CML18 [Cucurbita moschata] >XP_022965322.1 probable calcium-binding protein CML18 [Cucurbita maxima] >XP_022965323.1 probable calcium-binding protein CML18 [Cucurbita maxima] >XP_022965324.1 probable calcium-binding protein CML18 [Cucurbita maxima] >XP_023552506.1 probable calcium-binding protein CML18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA
Sbjct: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60

Query: 61 DTNSNGLVEFSEFVALAEPEL 82
          DTNSNGLVEFSEFVALAEPEL
Sbjct: 61 DTNSNGLVEFSEFVALAEPEL 81

[Close]

BLAST of Carg23596 vs. NCBI nr
Match: XP_008448654.1 (PREDICTED: probable calcium-binding protein CML18 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 4.1e-35
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA
Sbjct: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60

Query: 61 DTNSNGLVEFSEFVALAEPEL 82
          DTNSNGLVEFSEFVAL EPEL
Sbjct: 61 DTNSNGLVEFSEFVALVEPEL 81

[Close]

BLAST of Carg23596 vs. NCBI nr
Match: XP_022145375.1 (probable calcium-binding protein CML18 [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 9.2e-35
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MSDKQPIKLDDEQ+AELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA
Sbjct: 1  MSDKQPIKLDDEQMAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60

Query: 61 DTNSNGLVEFSEFVALAEPEL 82
          DTNSNGLVEFSEFVAL EPEL
Sbjct: 61 DTNSNGLVEFSEFVALVEPEL 81

[Close]

BLAST of Carg23596 vs. NCBI nr
Match: XP_022924802.1 (probable calcium-binding protein CML18 [Cucurbita moschata] >XP_023540544.1 probable calcium-binding protein CML18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLE+LIMKA
Sbjct: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLESLIMKA 60

Query: 61 DTNSNGLVEFSEFVALAEPEL 82
          DTNSNGLVEFSEFVAL EPEL
Sbjct: 61 DTNSNGLVEFSEFVALVEPEL 81

[Close]

BLAST of Carg23596 vs. NCBI nr
Match: XP_004148765.1 (PREDICTED: probable calcium-binding protein CML18 [Cucumis sativus] >KGN55728.1 hypothetical protein Csa_3G008850 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 5.9e-34
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MS+KQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLE+LIMKA
Sbjct: 1  MSNKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLESLIMKA 60

Query: 61 DTNSNGLVEFSEFVALAEPEL 82
          DTNSNGLVEFSEFVAL EPEL
Sbjct: 61 DTNSNGLVEFSEFVALVEPEL 81

[Close]

BLAST of Carg23596 vs. TAIR10
Match: AT1G32250.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 124.4 bits (311), Expect = 5.4e-29
Identity = 65/81 (80.25%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MS K   KLD+EQI ELREIFRSFDRN DGSLTQLELGSLLR+LG+KPSPDQ E LI KA
Sbjct: 1  MSHKVSKKLDEEQINELREIFRSFDRNKDGSLTQLELGSLLRALGVKPSPDQFETLIDKA 60

Query: 61 DTNSNGLVEFSEFVALAEPEL 82
          DT SNGLVEF EFVAL  PEL
Sbjct: 61 DTKSNGLVEFPEFVALVSPEL 81

[Close]

BLAST of Carg23596 vs. TAIR10
Match: AT3G03000.1 (EF hand calcium-binding protein family)

HSP 1 Score: 124.4 bits (311), Expect = 5.4e-29
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 6  PIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSN 65
          P KL DEQ+AELREIFRSFD+N DGSLT+LELGSLLRSLGLKPS DQL+ LI KAD N+N
Sbjct: 10 PAKLGDEQLAELREIFRSFDQNKDGSLTELELGSLLRSLGLKPSQDQLDTLIQKADRNNN 69

Query: 66 GLVEFSEFVALAEPEL 82
          GLVEFSEFVAL EP+L
Sbjct: 70 GLVEFSEFVALVEPDL 85

[Close]

BLAST of Carg23596 vs. TAIR10
Match: AT1G18530.1 (EF hand calcium-binding protein family)

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 11 DEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEF 70
          ++QI +L++IF  FD + DGSLT LEL +LLRSLGLKPS DQ+  L+   D+N NG VEF
Sbjct: 2  EDQIRQLKDIFDRFDMDADGSLTILELAALLRSLGLKPSGDQIHVLLASMDSNGNGFVEF 61

Query: 71 SEFVALAEPEL 82
           E V    P+L
Sbjct: 62 DELVGTILPDL 72

[Close]

BLAST of Carg23596 vs. TAIR10
Match: AT3G25600.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-14
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 12 EQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEFS 71
          +QI +L++IF  FD + DGSLTQLEL +LLRSLG+KP  DQ+  L+ + D N NG VEF 
Sbjct: 8  DQIKQLKDIFARFDMDKDGSLTQLELAALLRSLGIKPRGDQISLLLNQIDRNGNGSVEFD 67

Query: 72 EFVALAEPEL 82
          E V    P++
Sbjct: 68 ELVVAILPDI 77

[Close]

BLAST of Carg23596 vs. TAIR10
Match: AT2G41100.1 (Calcium-binding EF hand family protein)

HSP 1 Score: 74.3 bits (181), Expect = 6.4e-14
Identity = 33/69 (47.83%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 8  KLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGL 67
          KL D+QI E RE FR FD+N DGS+T+ ELG+++RS+G KP+   L++L+ +AD + +G 
Sbjct: 4  KLTDDQITEYRESFRLFDKNGDGSITKKELGTMMRSIGEKPTKADLQDLMNEADLDGDGT 63

Query: 68 VEFSEFVAL 77
          ++F EF+ +
Sbjct: 64 IDFPEFLCV 72

[Close]

BLAST of Carg23596 vs. Swiss-Prot
Match: sp|Q9LQN4|CML17_ARATH (Probable calcium-binding protein CML17 OS=Arabidopsis thaliana OX=3702 GN=CML17 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.7e-28
Identity = 65/81 (80.25%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MS K   KLD+EQI ELREIFRSFDRN DGSLTQLELGSLLR+LG+KPSPDQ E LI KA
Sbjct: 1  MSHKVSKKLDEEQINELREIFRSFDRNKDGSLTQLELGSLLRALGVKPSPDQFETLIDKA 60

Query: 61 DTNSNGLVEFSEFVALAEPEL 82
          DT SNGLVEF EFVAL  PEL
Sbjct: 61 DTKSNGLVEFPEFVALVSPEL 81

[Close]

BLAST of Carg23596 vs. Swiss-Prot
Match: sp|Q9M8U1|CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.7e-28
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 6  PIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSN 65
          P KL DEQ+AELREIFRSFD+N DGSLT+LELGSLLRSLGLKPS DQL+ LI KAD N+N
Sbjct: 10 PAKLGDEQLAELREIFRSFDQNKDGSLTELELGSLLRSLGLKPSQDQLDTLIQKADRNNN 69

Query: 66 GLVEFSEFVALAEPEL 82
          GLVEFSEFVAL EP+L
Sbjct: 70 GLVEFSEFVALVEPDL 85

[Close]

BLAST of Carg23596 vs. Swiss-Prot
Match: sp|Q9AWK2|CML11_ORYSJ (Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 9   LDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLV 68
           L D+Q+ ELREIFRSFDRN DGSLTQLELGSLLRSLGLKPS D+L++LI +ADTNSNGL+
Sbjct: 57  LGDDQLGELREIFRSFDRNGDGSLTQLELGSLLRSLGLKPSTDELDSLIQRADTNSNGLI 116

Query: 69  EFSEFVALAEPELWQQ---FEHEKLRCVPVNLFAVTGN 104
           EFSEFVAL  PEL      +  +++R +  N+F   GN
Sbjct: 117 EFSEFVALVAPELLYDRAPYSEDQIRRL-FNIFDRDGN 153

[Close]

BLAST of Carg23596 vs. Swiss-Prot
Match: sp|Q6L5F4|CML14_ORYSJ (Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-15
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 6  PIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSN 65
          P +L   Q+ +LRE+FR FD N DGSLTQLEL +LLRSLGL+P+ D++  L+   D N N
Sbjct: 15 PQQLRGSQLKQLRELFRRFDMNGDGSLTQLELAALLRSLGLRPTGDEVHALLAGMDANGN 74

Query: 66 GLVEFSEFVALAEPELWQQ 85
          G VEF E  A   P L  Q
Sbjct: 75 GSVEFDELAAAIAPVLTTQ 93

[Close]

BLAST of Carg23596 vs. Swiss-Prot
Match: sp|Q9FZ75|CML15_ARATH (Probable calcium-binding protein CML15 OS=Arabidopsis thaliana OX=3702 GN=CML15 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.9e-14
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 11 DEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKADTNSNGLVEF 70
          ++QI +L++IF  FD + DGSLT LEL +LLRSLGLKPS DQ+  L+   D+N NG VEF
Sbjct: 2  EDQIRQLKDIFDRFDMDADGSLTILELAALLRSLGLKPSGDQIHVLLASMDSNGNGFVEF 61

Query: 71 SEFVALAEPEL 82
           E V    P+L
Sbjct: 62 DELVGTILPDL 72

[Close]

BLAST of Carg23596 vs. TrEMBL
Match: tr|A0A1S3BKU3|A0A1S3BKU3_CUCME (probable calcium-binding protein CML18 OS=Cucumis melo OX=3656 GN=LOC103490757 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.7e-35
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA
Sbjct: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60

Query: 61 DTNSNGLVEFSEFVALAEPEL 82
          DTNSNGLVEFSEFVAL EPEL
Sbjct: 61 DTNSNGLVEFSEFVALVEPEL 81

[Close]

BLAST of Carg23596 vs. TrEMBL
Match: tr|A0A0A0L1S8|A0A0A0L1S8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008850 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-34
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MS+KQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLE+LIMKA
Sbjct: 1  MSNKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLESLIMKA 60

Query: 61 DTNSNGLVEFSEFVALAEPEL 82
          DTNSNGLVEFSEFVAL EPEL
Sbjct: 61 DTNSNGLVEFSEFVALVEPEL 81

[Close]

BLAST of Carg23596 vs. TrEMBL
Match: tr|A0A2H5PYP1|A0A2H5PYP1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_179900 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MS+KQP+ LDD+QIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLE LI KA
Sbjct: 1  MSNKQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60

Query: 61 DTNSNGLVEFSEFVALAEPELWQQ---FEHEKLR 92
          DTNSNGLVEFSEFVAL  PEL      +  E+LR
Sbjct: 61 DTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLR 94

[Close]

BLAST of Carg23596 vs. TrEMBL
Match: tr|A0A067EGL1|A0A067EGL1_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g037787mg PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MS+KQP+ LDD+QIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLE LI KA
Sbjct: 1  MSNKQPMNLDDDQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLETLIQKA 60

Query: 61 DTNSNGLVEFSEFVALAEPELWQQ---FEHEKLR 92
          DTNSNGLVEFSEFVAL  PEL      +  E+LR
Sbjct: 61 DTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLR 94

[Close]

BLAST of Carg23596 vs. TrEMBL
Match: tr|M5WC89|M5WC89_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G029500 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MSDKQPIKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPSPDQLENLIMKA 60
          MS+KQP+KLDDEQIA+LREIFRSFDRNNDGSLTQLELGSLLRSLGLKP PDQL+ LI KA
Sbjct: 1  MSNKQPVKLDDEQIADLREIFRSFDRNNDGSLTQLELGSLLRSLGLKPGPDQLDTLIQKA 60

Query: 61 DTNSNGLVEFSEFVALAEPEL 82
          DTNSNGLVEFSEFVAL  PEL
Sbjct: 61 DTNSNGLVEFSEFVALVAPEL 81

The following BLAST results are available for this feature:

BLAST of Carg23596 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923350.1	1.4e-35	100.00	probable calcium-binding protein CML18 [Cucurbita moschata] >XP_022965322.1 prob...	[more]
XP_008448654.1	4.1e-35	98.77	PREDICTED: probable calcium-binding protein CML18 [Cucumis melo]	[more]
XP_022145375.1	9.2e-35	97.53	probable calcium-binding protein CML18 [Momordica charantia]	[more]
XP_022924802.1	1.6e-34	97.53	probable calcium-binding protein CML18 [Cucurbita moschata] >XP_023540544.1 prob...	[more]
XP_004148765.1	5.9e-34	96.30	PREDICTED: probable calcium-binding protein CML18 [Cucumis sativus] >KGN55728.1 ...	[more]

BLAST of Carg23596 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32250.1	5.4e-29	80.25	Calcium-binding EF-hand family protein	[more]
AT3G03000.1	5.4e-29	81.58	EF hand calcium-binding protein family	[more]
AT1G18530.1	4.4e-15	54.93	EF hand calcium-binding protein family	[more]
AT3G25600.1	1.3e-14	52.86	Calcium-binding EF-hand family protein	[more]
AT2G41100.1	6.4e-14	47.83	Calcium-binding EF hand family protein	[more]

BLAST of Carg23596 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LQN4\|CML17_ARATH	9.7e-28	80.25	Probable calcium-binding protein CML17 OS=Arabidopsis thaliana OX=3702 GN=CML17 ...	[more]
sp\|Q9M8U1\|CML18_ARATH	9.7e-28	81.58	Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 ...	[more]
sp\|Q9AWK2\|CML11_ORYSJ	1.1e-26	65.31	Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q6L5F4\|CML14_ORYSJ	3.2e-15	53.16	Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q9FZ75\|CML15_ARATH	7.9e-14	54.93	Probable calcium-binding protein CML15 OS=Arabidopsis thaliana OX=3702 GN=CML15 ...	[more]

BLAST of Carg23596 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKU3\|A0A1S3BKU3_CUCME	2.7e-35	98.77	probable calcium-binding protein CML18 OS=Cucumis melo OX=3656 GN=LOC103490757 P...	[more]
tr\|A0A0A0L1S8\|A0A0A0L1S8_CUCSA	3.9e-34	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008850 PE=4 SV=1	[more]
tr\|A0A2H5PYP1\|A0A2H5PYP1_CITUN	1.1e-31	80.85	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_179900 PE=4 SV=1	[more]
tr\|A0A067EGL1\|A0A067EGL1_CITSI	1.1e-31	80.85	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g037787mg PE=4 SV=1	[more]
tr\|M5WC89\|M5WC89_PRUPE	1.8e-31	88.89	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G029500 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23596-RA	Carg23596-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 52..80 e-value: 0.83 score: 18.4 coord: 16..44 e-value: 6.4E-5 score: 32.3
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 16..77 e-value: 1.4E-13 score: 51.0
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 12..47 score: 15.043
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 48..83 score: 10.078
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 16..76 e-value: 4.88787E-10 score: 50.6241
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 7..122 e-value: 4.1E-22 score: 80.5
None	No IPR available	PANTHER	PTHR44256	FAMILY NOT NAMED	coord: 1..86
None	No IPR available	PANTHER	PTHR44256:SF1	SUBFAMILY NOT NAMED	coord: 1..86
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 61..73
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 25..37
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 9..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23596	Cla008830	Watermelon (97103) v1	carwmB1049
Carg23596	Csa3G008850	Cucumber (Chinese Long) v2	carcuB1064
Carg23596	MELO3C013829	Melon (DHL92) v3.5.1	carmeB1017
Carg23596	ClCG10G001360	Watermelon (Charleston Gray)	carwcgB1021
Carg23596	CSPI03G01400	Wild cucumber (PI 183967)	carcpiB1085
Carg23596	Cucsa.322020	Cucumber (Gy14) v1	carcgyB1164
Carg23596	CmaCh06G006350	Cucurbita maxima (Rimu)	carcmaB1454
Carg23596	CmoCh06G006400	Cucurbita moschata (Rifu)	carcmoB1409
Carg23596	Lsi07G011730	Bottle gourd (USVL1VR-Ls)	carlsiB958
Carg23596	Cp4.1LG14g09820	Cucurbita pepo (Zucchini)	carcpeB1461
Carg23596	Cp4.1LG08g08740	Cucurbita pepo (Zucchini)	carcpeB1463
Carg23596	CsGy3G001300	Cucumber (Gy14) v2	carcgybB1033
Carg23596	MELO3C013829.2	Melon (DHL92) v3.6.1	carmedB1029
Carg23596	CsaV3_3G001430	Cucumber (Chinese Long) v3	carcucB1097
Carg23596	Bhi11G000004	Wax gourd	carwgoB1230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23596	Bottle gourd (USVL1VR-Ls)	carlsiB957
Carg23596	Watermelon (97103) v2	carwmbB1107
Carg23596	Wax gourd	carwgoB1231
Carg23596	Silver-seed gourd	carcarB613
Carg23596	Silver-seed gourd	carcarB651
Carg23596	Cucurbita maxima (Rimu)	carcmaB1453
Carg23596	Cucurbita moschata (Rifu)	carcmoB1407
Carg23596	Cucurbita moschata (Rifu)	carcmoB1408
Carg23596	Cucurbita pepo (Zucchini)	carcpeB1462